Digital Commons Network^™

Landscape-Scale Epidemiological Dynamics Of Sars-Cov-2 In White-Tailed Deer, Joshua Hewitt, Grete Wilson-Henjum, Derek T. Collins, Timothy J. Linder, Julianna B. Lenoch, Jonathan D. Heale, Christopher A. Quintanal, Robert Pleszewski, Dillon S. Mcbride, Andrew S. Bowman, Jeffrey C. Chandler, Susan A. Shriner, Sarah N. Bevins, Dennis J. Kohler, Richard B. Chipman, Allen L. Gosser, David L. Bergman, Thomas J. Deliberto, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding pathogen emergence in new host species is fundamental for developing prevention and response plans for human and animal health. We leveraged a large-scale surveillance dataset coordinated by United States Department of Agriculture, Animal and Plant Health Inspection Service and State Natural Resources Agencies to quantify the outbreak dynamics of SARS-CoV-2 in North American white-tailed deer (Odocoileus virginianus; WTD) throughout its range in the United States. Local epidemics in WTD were well approximated by a single-outbreak peak followed by fade out. Outbreaks peaked early in the northeast and mid- Atlantic. Local effective reproduction ratios of SARS-CoV-2 were between …

Probabilistic Genetic Identification Of Wild Boar Hybridization To Support Control Of Invasive Wild Pigs (Sus Scrofa), Timothy J. Smyser, Peter Pfaffelhuber, Rachael M. Giglio, Matthew G. Desaix, Amy J. Davis, Courtney F. Bowden, Michael A. Tabak, Arianna Manunza, Valentin Adrian Bâlteanu, Marcel Amills, Laura Iacolina, Pamela Walker, Carl Lessard, Antoinette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

The rapid expansion of wild pigs (Sus scrofa) throughout the United States has been fueled by unlawful introductions, with invasive populations causing extensive crop losses, damaging native ecosystems, and serving as a reservoir for disease. Multiple states have passed laws prohibiting the possession or transport of wild pigs. However, genetic and phenotypic similarities between domestic pigs and invasive wild pigs—which overwhelmingly represent domestic pig and wild boar hybrids—pose a challenge for the enforcement of such regulations. We sought to exploit wild boar ancestry as a common attribute among the vast majority of invasive wild pigs as a means …

Efficacy Of X-Ray Phytosanitary Irradiation On The Infectivity And Reproduction Of Angiostrongylus Cantonensis In Experimentally Infected Rats, Susan I. Jarvi, Lisa M. Kaluna, Steven C. Hess, Lindsey Hamilton, Carmen Antaky, Robert T. Sugihara, Israel L. Leinbach, Yaeko Tagami, Argon Steel, Kathleen Howe, Steven Jacquier, Forrest Cookman, Jocelyn Diaz, John Jacob, Peter Follett

United States Department of Agriculture Wildlife Services: Staff Publications

Angiostrongylus cantonensis is a globally distributed nematode and the leading cause of eosinophilic meningitis in humans. As a global hotspot for this disease, Hawaii’s agricultural exports may be contributing to the spread of A. cantonensis. Phytosanitary irradiation doses of 150 or 400 Gy provide quarantine security against multiple insect pests. We evaluated the in vitro and in vivo effects of phytosanitary irradiation on infectious, third-stage A. cantonensis juveniles. In vitro experiments directly exposed juveniles to irradiation doses ranging from 200 to 1,000 Gy. Results showed low mortality and no dose response across all treatments 27 days post-irradiation. …

Potential Landscape Connectivity For Invasive Wild Pigs (Sus Scrofa) Across The Northern Prairies Of North America, Corey J. Kramer, Melanie R. Boudreau, Ryan Powers, Kurt C. Vercauteren, Ryan S. Miller, Ryan K. Brook

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding landscape scale connectivity is an essential component in the management of invasive species since connectivity facilitates their invasion potential. Invasive wild pigs (Sus scrofa) are among the most prolific invaders on the planet, causing billions of dollars in agricultural and environmental damage annually. Newly introduced to Canada in the 1980s, we examined wild pig invasion potential across the northern prairies from western Canada into the currently wild pig-free northern U.S. states. We used GPS collar data collected in the Canadian prairies to quantify resource selection and incorporated results into an electric circuit theory framework to evaluate potential …

Eradication Of Feral Swine From A Barrier Island In Florida, Usa: An Examination Of Effort And Multi-Method, Multi-Species Population Indexing, Richard M. Engeman, Eric A. Tillman, Betsy A. Evans, John C. Griffin, Garrison Grobaski, Bradley S. Smith, John Stark, Bryan M. Kluever

United States Department of Agriculture Wildlife Services: Staff Publications

Feral swine (Sus scrofa) were targeted for and successfully eradicated from Saint Vincent Island (SVI), a National Wildlife Refuge (NWR) along the coast of Florida’s panhandle to protect its habitats and uncharacteristically high diversity of wildlife species for barrier islands in the region, including federal and state-listed threatened and endangered species. The eradication effort was initiated in early 2015 and concluded in 2019. A total of 438 feral swine were removed from the Island, 417 by federal control experts and 21 by recreational hunters. In general, the amount of effort needed to eradicate each feral swine slowly increased …

Effects Of Ungulate‐Proof Fencing On Space Use By Wild Pigs, Kelly Koriakin, D. Buck Jolley, Benjamin Smith, Kurt C. Vercauteren, Nathan P. Snow

United States Department of Agriculture Wildlife Services: Staff Publications

Wild pigs (Sus scrofa) are a highly adaptable species that have invaded many regions and cause significant damage throughout the world. Ungulate‐proof fencing is increasingly used in conjunction with other control techniques to manage wild pig populations. However, little is known about how fencing affects wild pig space use behaviors and whether any changes may be exploited to increase efficacy of control activities. Our goal was to understand how wild pigs altered their space use behaviors in response to newly constructed fencing. Specifically, we examined for changes in space use area (home range and core area), increases in …

Relief Displacement Of Airborne Objects, Esteban Fernández-Juricic, Joe Crumpton, Morgan B. Pfeiffer, Sathishkummar Saiappan, Jared A. Elmore, Landon R. Jones, B. Santhana Krishnan, Raymond B. Iglay, Bradley F. Blackwell

United States Department of Agriculture Wildlife Services: Staff Publications

The increasing availability of unoccupied aircraft systems (UAS, also referred to as drones) has led to their use in taking vertical aerial photographs at relatively small spatial scales. These photographs can be used to measure the distances between objects appearing in the photographs. However, relief displacement can cause an object above or below ground level to appear at a point in a vertical aerial photograph that is not directly in-line with the object’s actual location, causing a measurement error. A UAS was used in this study as a photographed airborne object because its location and altitude could be controlled. We …

Efficacy Of Gonacon Fertility Control Against Prairie Dogs And Potential For Uses On Other Rodent Species, Aaron B. Shiels, Emily W. Ruell, Jason E. Bruemmer

United States Department of Agriculture Wildlife Services: Staff Publications

Use of a contraceptive (i.e., fertility control) is attractive for rodent management where lethal control is unwanted. Although population reduction is generally unachievable with small-scale, short-term contraceptive use, reduced juvenile recruitment is achievable. The injectable immunocontraceptive vaccine GonaCon (active ingredient: gonadotropin releasing hormone [GnRH]) was registered in 2022 by the United States Environmental Protection Agency (EPA) for controlling fertility of female prairie dogs (Cynomys, a type of ground squirrel) in urban/suburban settings. Here we: 1) describe past research, including a replicated field study in Colorado (GonaCon treatment vs. control sites) testing efficacy of GonaCon in prairie dogs, which …

Incorporating Equity Into Sea-Level Rise Planning: Perspectives From Practitioners Across California, Nayré Herrera

Cal Poly Humboldt theses and projects

Scholars along with national and state governments have increasingly made calls to incorporate an equity lens into climate adaptation processes and into sea-level rise planning specifically. However, the language used in these high-level policies remains vague. There remains a need to learn from practitioners on the ground about the challenges and opportunities for effectively incorporating an equity lens into sea-level rise adaptation and planning efforts. I conducted interviews with 17 individuals who are working within their agencies or organizations to advance equity across the California coast along with a review of 17 California coastal policy documents to gain insights into …

The "Upside-Down" River: Trends In Total Nitrogen, Total Phosphorus, And Microcystin Concentration In The Klamath Basin, 2010-2021, Kayla M. Fitzpatrick

Cal Poly Humboldt theses and projects

The Klamath River tends to experience impaired upstream water quality, which improves downstream. Although this consensus is accepted, an updated spatiotemporal analysis of certain water quality parameters has not been conducted since 2017. With four of the Klamath River’s dams slated for removal by the end of 2024, it is critical to have an updated assessment of current water quality conditions from which to compare conditions following dam removal. In this study, total nitrogen (TN), total phosphorus (TP), and microcystin data from 2010-2021 were analyzed to determine concentration trends from Link Dam to the Klamath River Estuary.

Concentrations of TN …

Evaluating The Trojan Y Chromosome Strategy For The Removal Of Invasive Sacramento Pikeminnow From The Eel River, Ca, Alexander W. Juan

Cal Poly Humboldt theses and projects

The recent introduction and spread of Sacramento Pikeminnow (Ptychocheilus grandis) in Northern California’s Eel River Basin represents a significant threat and impediment to the recovery of several threatened native fish species. This study was undertaken to evaluate the Trojan Y Chromosome Strategy (TYC) for the extirpation of pikeminnow from the basin. TYC is a genetic biocontrol method that relies on the production and stocking of fish with YY sex chromosomes, which may be phenotypically male (YY male) or female (YY female). These YY fish produce all-male offspring when mating with their wild conspecifics and TYC can lead to …

Targeting Ocean Conservation Outcomes Through Threat Reduction, Joseph A. Turner, Malcolm Starkey, Nicholas K. Dulvy, Frank Hawkins, Louise Mair, Adeline Serckx, Thomas Brooks, Beth Polidoro, Stuart H. M. Butchart, Kent Carpenter, Minna Epps, Rima W. Jabado, Nicholas B. W. Macfarlane, Leon Bennun

Biological Sciences Faculty Publications

Nations have committed to reductions in the global rate of species extinctions through the Sustainable Development Goals 14 and 15, for ocean and terrestrial species, respectively. Biodiversity loss is worsening despite rapid growth in the number and extent of protected areas, both at sea and on land. Resolving this requires targeting the locations and actions that will deliver positive conservation outcomes for biodiversity. The Species Threat Abatement and Restoration (STAR) metric, developed by a consortium of experts, quantifies the contributions that abating threats and restoring habitats in specific places offer towards reducing extinction risk based on the IUCN Red List …

Wild Sun Bears (Helarctos Malayanus) Exhibit Aseasonality In Parturition, Zachary A. David, Brian Crudge, Matt Hunt, Kirsty Officer, Vuthy Choun, Barbara Durrant, Megan A. Owen, Morokot Long, John P. Whiteman

Biological Sciences Faculty Publications

Seasonal reproduction can provide species with fitness advantages by allowing the birth of young to coincide with favorable environmental conditions, particularly in environments with high seasonal and intra-annual variation in these conditions. Seven of the eight species in the bear family (Ursidae) reproduce seasonally in both managed care and the wild; however, data for the eighth species, the sun bear (Helarctos malayanus), is unclear. Sun bears have been observed to reproduce throughout the year in managed care, yet currently there are no clear data of birth timing for wild sun bear cubs. Here we investigate the seasonality of …

State Of Coastal And Marine Resources: Sablayan, Occidental Mindoro, Ma Celina J. Añonuevo, Jemelyn Grace P. Baldisimo, Denmark B. Racamara, Mary Joyce P. Velos, Joseph Benedict T. Garcia, Frederico B. Sabban, Joey P. Cabasan, Rhea Mae Luciano, Darryl Anthony Valiño, Lovely Joy Heyres, Hazel O. Arceo

Biological Sciences Faculty Publications

[Introduction] Sablayan, situated on the western side of Mindoro Island facing the WPS (12.8564° N, 120.9101° E), is a first-class municipality in the province of Occidental Mindoro with a total land area of 2,188.8km² that is divided into 22 barangays, nine of which are along the coast. The coastline stretches for 115 km, with municipal waters covering approximately 750,000 km² (LGU-Sablayan 2008).

The Apo Reef Natural Park, one of its most prominent features, is located approximately 33 km off the coast (Figure 2.9-1) The Apo Reef Natural Park is a protected coral reef system under presidential proclamation 868 (1996) encompassing …

State Of Coastal And Marine Resources: Lian, Batangas, Joseph Benedict T. Garcia, Mary Joyce P. Velos, Jemelyn Grace P. Baldisimo, Joey P. Cabasan, Ma Celina J. Añonuevo, Denmark B. Recamara, Hazel O. Arceo

Biological Sciences Faculty Publications

[Introduction] Lian (13.9852° N, 120.6545° E) is a third-class municipality in the northwestern part of the province of Batangas. It is bounded on the north by the municipality of Nasugbu, on the east by the municipalities of Tuy and Balayan, on the west by the WPS, and on the south by the municipality of Catatagan (Figure 2.7-1). It has a total land area of 76.80km² that is divided into 19 barangays, six of which are coastal and two are integrated coastal barangays (LGU-Lian 2013). Its total population is 56,280 individuals in 15,991 households as of 2020 (PSA 2020).

The main …

Better Understanding The Barred Owl, Adam Lee Potts

Graduate Student Theses, Dissertations, & Professional Papers

This thesis research presents an analysis of barred owl nest site selection in an understudied region of their expanded range. The barred owl has dramatically expanded its range westwards over the last 150 years, prompting multiple conflicting reinterpretations of their species account. Hypotheses of range expansion are reviewed to provide context for this study’s research. This study gathers empirical data on nest site selection in the mixed conifer forests of Montana’s Seeley-Swan and Mission Valleys. Eight barred owl nests were located following extensive territory surveys. Field measurements of tree height and diameter using USFS Forest Inventory and Analysis (FIA) plot …

Soil Responses To Eastern Redcedar (Juniperus Virginiana L.) Afforestation And Prescribed Fire In South-Central South Dakota, Robert Schaefer

Electronic Theses and Dissertations

Research was conducted in 2019 and 2020 on rangelands located in south-central South Dakota assessing a number of physical, chemical, and biological properties of mineral ustepts and ustents soils associated with eastern redcedar (ERC) (Juniperus virginiana) afforestation and prescribed fire. ERC afforestation appeared to be associated with significantly higher field-condition soil aggregate stability, cation exchange capacity (CEC), soil pH, and fungi:bacteria (F:B) as well as significantly lower soil moisture, nitrate-N, phosphorus, bacteria biomass, and Gram-positive:Gram-negative (GP:GN) bacteria compared to native grassland conditions, while other mineral soil properties appeared relatively unaffected. Compared to soil conditions under dense, living ERC canopies, prescribed …

Increasing Retention Of Women In Hunting And Fishing, Shelby Isensee

Electronic Theses and Dissertations

Despite national declines in hunting and fishing, women are making inroads in historically male-dominated sports. To further encourage women’s participation, states established programs to recruit, retain, and reactivate [R3] hunters and anglers. Women are participating in these programs and other recreational groups to access opportunities to learn skills and grow their networks. Yet, very little is known about what programs are offered for women, what aspects of programs are most effective to support women’s retention in these activities, and what women’s hunting and fishing groups are available across the landscape. To address these questions, I collected qualitative data from participant …

Hydrologic Pathways Of A Northern Hardwood Catchment In The Great Lakes Basin Using End Member Mixing Analysis, Cory C. Burkwald

Dissertations, Master's Theses and Master's Reports

This study investigated the seasonality of hydrologic pathways, the role of wetlands in streamflow generation, and how hydrologic pathways affect the export of nutrients by streamflow in the Sturgeon River using endmember mixing analysis. The results indicated that streamflow consists of three main components: shallow subsurface water from wetland soils, shallow groundwater, and surface runoff from precipitation. Snowmelt plays a dominating role in regulating stream water chemistry (~80% volume at peak) during the snowmelt season and likely also after that. Wetland soils store snowmelt, together with rainwater though the fraction is unknown, and then gradually release through summer in the …

Photosynthesis-Related Parameters In Leucobryum Aduncum Moss Bags As Bioindicators Of Environmental Stress Caused By Road Traffic, Chaiwat Boonpeng, Pawanrat Butrid, Marisa Pischom, Sutatip Noikrad, Kansri Boonpragob

Applied Environmental Research

The physiological response in moss samples is often used as an early warning signal of environmental stress caused by air pollution. This study aimed to test the efficiency of photosynthesis-related parameters in Leucobryum aduncum moss bags as bioindicators of environmental stress related to road traffic. The moss samples were collected and prepared in a relatively unpolluted area and then transplanted at 7 sites in forested, rural, and urban areas. The moss samples were picked up after being exposed for 1 and 3 months for physiological measurements. The results showed that the average values of all physiological parameters were highest in …

Analyzing Climate Change Status Through Evaluating Trend Of Temperature And Rainfall And Predicting Future Climate Change Status At Lake Tana Basin, Tesfaye Bayu Zeleke, Tri Retnaningsih Soeprobowati, Solomon Adissu, Meseret Abatechanie

Applied Environmental Research

The trends of temperature and rainfall are critical indicators of climate change within a certain area. However, the existence of climate change is not locally understood in most parts of the world. This research aims to analyze the trend of temperature and rainfall in the Lake Tana Sub-basin as a means to understand the current and future status of climate change. The trends of temperature and rainfall were analyzed using the modified Mann-Kendall trend test, while the autoregressive integrated moving average model (ARIMA) was used to predict future temperature and rainfall. The findings reveal that monthly temperatures show a significant …

Effects Of Covid-19 Policy On Air Quality In Lagos State, Nigeria, Chika Floyd Amaechi, Alex Enuneku, Ugochinyere Stephanie Amadi, Akus Kingsley Okoduwa

Applied Environmental Research

The decrease in air quality has been a major concern in the world for decades, and it has continued to worsen with toxic gases accumulating at exponential rates. The atmosphere has been heavily polluted as a result of anthropogenic activities, and these activities were greatly reduced during the COVID-19 pandemic when a lockdown policy was imposed. The study area, Lagos, is the state in Nigeria with the highest population count, making it most susceptible to the spread of the coronavirus and, as such, having the strictest policy regulations. This study seeks to evaluate the effects of the COVID-19 lockdown policy …

Social Return On Investment (Sroi) From The Community Waste Bank Implementation Under The Learning Center Of Systematic Waste Management Innovation According To The Circular Economy Concept, Pornpod Sridan, Pichaya Surapolchai, Thidasil Plainlaor, Apinya Tanyaim, Nuchanad Hounnaklang, Onuma Zongram, Yotwadee Hawangchu

Applied Environmental Research

This article presents the results of social return on investment (SROI) evaluation in the community’s waste bank program implemented in the Moo 7 and Moo 8 Villages of Tan Diao Subdistrict, Kaeng Khoi District, Saraburi Province during 2020–2022, which is a part of the Learning Centre of Systematic Waste Management Innovation According to the Concept of Circular Economy project. This research employed participatory action research to collect data on total cost for investment and income from selling recyclable waste through in-depth interviews and focus groups with a total of 40 stakeholders including: 25 community members, 5 community leaders, 3 representatives …

Green Retail Development For Plastic Waste Prevention – Regime Trajectories And Levers For Change In Thailand’S Socio-Technical System Of Single-Use Plastics, Siri Luther, Sujitra Vassanadumrongdee

Applied Environmental Research

Thailand faces significant plastic waste management challenges. Around 2018-2019, a growing number of green retail shops started emerging in Thailand, offering products and services that eliminate or reduce the consumption of single-use plastics (SUPs). This paper intends to explore green retail as a niche in the Thai socio-technical system of SUPs. It aims to understand the socio-technical system’s current state, identify niche dynamics and momentum, illustrate key regime trajectories, and highlight policy levers. The study uses secondary data from academic articles and policy documentation, along with primary data from interviews with 20 Thai green retail founders conducted between 2020 and …

Meteorological Conditions And Pm2.5 Impact On Covid-19 Case Fatality Ratios (Cfr) In Bangkok Metropolitan Region, Viranphat Singrakphon, Chidsanuphong Chart-Asa, Pasicha Chaikaew

Applied Environmental Research

The emergence of a novel coronavirus strain triggered a global health crisis, impacting both health and economies worldwide, including Thailand since 2019. While prior research hinted at connections between environmental factors and rising COVID-19 cases, these links remained inconclusive. This study investigated indoor and outdoor (I/O) ratios and explored potential correlations between fine particulate matter (PM2.5), meteorological conditions, and the case fatality rate (CFR%) of COVID-19 in Bangkok and its metropolitan area from January to December 2021. In Spearman’s Rank correlation analysis, the results found that CFR% exhibited a positive correlation with relative humidity (RH) (r=0.187) and a negative correlation …

Multi-Class Waste Classification Using Convolutional Neural Network, Yanfahmi Rayhan, Achmad Pratama Rifai

Applied Environmental Research

This study explores a method of waste classification using deep learning, specifically employing the Convolutional Neural Network (CNN). This research involves the creation of a unique dataset, a hybrid of publicly accessible data and a newly compiled collection of images across 13 waste classes: paper, glass, wood, metal, clothes, PCB e-waste, non-PCB e-waste, PET, HDPE, LDPE, PP, PVC, and PS. The development of the CNN model was approached in two ways: transfer learning and full learning. In the transfer learning approach, two pre-trained models, MobileNetV2 and DenseNet121, were utilized. While in the full learning approach, the architecture is constructed using …

Monitoring Of Estrone From Hospital Wastewater And Its Removal By Photocatalytic Membrane Reactor, Nicha Karnjanamit, Chongdee Thammakhet-Buranachai, Panitan Jutaporn, Watsa Khongnakorn

Applied Environmental Research

Steroid hormones, classified as endocrine-disrupting compounds (EDCs), pose significant environmental and health concerns due to their persistence and potential adverse effects. This study investigates the presence of estrone (E1) in hospital wastewater and the efficiency of E1 removal through a photocatalytic membrane reactor (PMR). Wastewater samples were collected from two hospitals with different wastewater treatment processes. The concentration of E1 was analyzed using a combination of solid phase extraction (SPE) and liquid chromatography-tandem mass spectrometry (LC-MS/MS). The PMR experimental setup involved a polyvinylidene fluoride (PVDF) membrane incorporated with 1 wt% titanium dioxide (PVDF/TiO2). The PMR performance was evaluated with and …

Alstonia Scholaris Fruit Biomass, A Novel Adsorbent For The Removal Of Lead From Aqueous Solution, Aasif Abdullah Baba, Ajit Kumar Das, Abhik Gupta

Applied Environmental Research

The biosorption of lead (Pb) ions on Alstonia scholaris fruit biomass was investigated in batch and column experiments in an aqueous solution, emphasising the possible binding mechanism of Pb ions on the fruit biomass. The adsorption process was found to be dependent on parameters like adsorbent dose, initial Pb ion concentration, contact time, and pH. No impact was found on Pb adsorption during competitive adsorption. The results suggested that the fruit biomass could remove more than 97% of Pb ions from the aqueous solution. The Freundlich isotherm model best explained the obtained results. The monolayer adsorption capacity of the A. …

Theoretical Approaches To Food Waste Behaviours: An Overview, Dane Chia, Chin Choo Yap, Mohamed Kheireddine Aroua, Lai Ti Gew

Applied Environmental Research

Food waste around the world has emerged as a pressing issue that calls for attention and intervention. Analysing the food waste problem without understanding wasteful behaviour antecedents may oversimplify this multi-faceted issue, which will then compromise the development of interventions. This paper provides an overview of the theoretical approaches to food waste behaviour antecedents, followed by evidence-based interventions, using the Theory of Planned Behaviour (TPB), the Norm Activation Model (NAM), and the Social Practice Theory (SPT). These theories encompass the psychological, behavioural, societal, material, and structural factors that influence food waste practices. Our aim is to provide a holistic understanding …

Assessing The Relationship And Effect Of Air Pollution [Pm 2.5] On Child Respiratory Illness And Child Mortality In The Philippines, Roel F. Ceballos, Rachell C. Gallano, Lenard D. Visaya

Applied Environmental Research

Air pollution is the presence of harmful substances in the air, which can seriously impact human health and the environment. Among the air pollutants, fine particulate matter (PM) 2.5, being a microscopic particle, poses serious health risks since it can enter the blood circulation and go deep into the lungs. PM 2.5 has been linked to several health problems, such as early mortality, problems with children's development, and unfavorable birth outcomes. In this regard, the study aims to investigate the relationship and effect of PM 2.5 on child respi-ratory illness and child mortality in the Philippines. Data on child respiratory …