Digital Commons Network^™

Establishing A Monitoring Framework To Evaluate Impacts Of Grazing Exclusion And Inform Restoration At Santa Rita Ranch, Annie Booth, Annie Booth

Master of Science in Environmental Sciences and Management Projects

Santa Rita Ranch is a 1,750-acre cattle ranch in Templeton, California, that was privately owned and continuously grazed for the past 70 years. In 2021, The Land Conservancy of San Luis Obispo (LCSLO) acquired the property, and in the winter of 2022, they built a fence that bisects the ranch, excluding the cattle from 800 acres to preserve the riparian habitat. The LCSLO is currently defining the ecological baseline for the ranch to inform future management decisions. Given that cattle grazing has many environmental tradeoffs, they wanted to establish a long-term monitoring study to understand how relieving the pressures of …

Factors Affecting California Grassland Biodiversity: Two Case Studies, Nora Bales

Master's Theses

Biodiversity loss over the last century has been significant and is projected to increase. Biodiversity loss is accelerating due to climate change and habitat loss and degradation. Biodiversity supports key ecosystem services including pollination services, climate regulation, and water filtration. Biodiversity conservation is a top priority for land managers and researchers, however many ecological studies with practical applications lack a thorough understanding of the soil environment in their study system. We conducted two case studies integrating soil and plant data to answer management questions. The first case study investigated the relationship between a threatened plant, Hooveria purpurea var. purpurea and …

Drivers And Dynamics Of Phytoplankton Communities And Harmful Algal Blooms In Mountain Lakes, Lara Stephanie Jansen

Dissertations and Theses

Harmful cyanobacterial blooms (cyanoHABs) are a complex and widespread disturbance in freshwater water bodies, impacting water quality for wildlife and human populations. While cyanobacteria often bloom in warm lakes impacted by human development like agriculture, blooms are increasingly reported in cooler waters with limited development in the surrounding watershed. As much of cyanoHAB research has focused on lakes in highly developed watersheds, the understanding of factors leading to cyanobacteria dominance and blooms in the absence of major development remains limited. Mountain lakes can serve as ideal systems to study bloom-forming cyanobacteria in watersheds with minimal development. In addition, mountain lakes …

The Impacts Of Transfer Learning For Ungulate Recognition At Sevilleta National Wildlife Refuge, Michael Gurule

Geography ETDs

As camera traps have grown in popularity, their utilization has expanded to numerous fields, including wildlife research, conservation, and ecological studies. The information gathered using this equipment gives researchers a precise and comprehensive understanding about the activities of animals in their natural environments. For this type of data to be useful, camera trap images must be labeled so that the species in the images can be classified and counted. This has typically been done by teams of researchers and volunteers, and it can be said that the process is at best time-consuming. With recent developments in deep learning, the process …

Sulfur Cycling Connects Microbiomes And Biogeochemistry In Deep-Sea Hydrothermal Plumes, Zhichao Zhou, Patricia Q. Tran, Alyssa M. Adams, Kristopher Kieft, John A. Breier, Caroline S. Fortunato, Cody S. Sheik, Julie A. Huber, Meng Li, Gregory J. Dick, Karthik Anantharaman

School of Earth, Environmental, & Marine Sciences Faculty Publications

In globally distributed deep-sea hydrothermal vent plumes, microbiomes are shaped by the redox energy landscapes created by reduced hydrothermal vent fluids mixing with oxidized seawater. Plumes can disperse over thousands of kilometers and their characteristics are determined by geochemical sources from vents, e.g., hydrothermal inputs, nutrients, and trace metals. However, the impacts of plume biogeochemistry on the oceans are poorly constrained due to a lack of integrated understanding of microbiomes, population genetics, and geochemistry. Here, we use microbial genomes to understand links between biogeography, evolution, and metabolic connectivity, and elucidate their impacts on biogeochemical cycling in the deep sea. Using …

Impact Of Forest Management On Ozark Big-Eared Bat (Corynorhinus Townsendii Ingens) Prey And Foraging Ecology, Gemma L. Marsh

ATU Theses and Dissertations 2021 - Present

Ozark big-eared bats (Corynorhinus townsendii ingens) are an endangered species of bat found only in Oklahoma and Arkansas. I conducted a study on the impact of forest management treatments, such as prescribed fire and mechanical thinning, in White Rock Mountain Wildlife Management Area, which is home to a maternity colony of Ozark big-eared bats. My goal was to understand how prescribed fire and mechanical thinning influence Ozark big-eared bat prey and foraging, and therefore be able to provide management recommendations for the habitat of this endangered species. My results indicated that bat prey availability was influenced by forest structure, …

The Association Between Drought Exposure And Respiratory-Related Mortality In The United States From 2000 To 2018, Yeongjin Gwon, Yuanyuan Ji, Jesse E. Bell, Azar M. Abadi, Jesse D. Berman, Austin Rau, Ronald D. Leeper, Jared Rennie

Daugherty Water for Food Global Institute: Faculty Publications

Climate change has brought increasing attention to the assessment of health risks associated with climate and extreme events. Drought is a complex climate phenomenon that has been increasing in frequency and severity both locally and globally due to climate change. However, the health risks of drought are often overlooked, especially in places such as the United States, as the pathways to health impacts are complex and indirect. This study aims to conduct a comprehensive assessment of the effects of monthly drought exposure on respiratory mortality for NOAA climate regions in the United States from 2000 to 2018. A two-stage model …

Fungi In Flux | Designing Regenerative Materials And Products With Mycelium, Arvind Bhallamudi

Masters Theses

As the world grapples with the escalating crisis of climate threats and environmental degradation, this research delves into the synergistic potential of design and biology, developing safe and sustainable materials for applications in prototyping, furniture and interior design. Harnessing the power of a unique organism - fungi, the study proposes an accessible, efficient, and resilient material resource system. It utilizes local waste streams and mycelium (the vegetative part of fungi) to grow functional structures. An experimental and small-scale protocol is modeled by testing bio-fabrication and bio-printing methods. The composites' performance qualities and characteristics are evaluated through mechanical testing and a …

Beyond Covid-19: Designing Inclusive Public Health Surveillance By Including Wastewater Monitoring., Rochelle H. Holm, Na'taki Osborne Jelks, Rebecca Schneider, Ted Smith

Faculty and Staff Scholarship

Wastewater-based epidemiology is a promising and expanding public health surveillance method. The current wastewater testing trajectory to monitor primarily at community wastewater treatment plants was necessitated by immediate needs of the pandemic. Going forward, specific consideration should be given to monitoring vulnerable and underserved communities to ensure inclusion and rapid response to public health threats. This is particularly important when clinical testing data are insufficient to characterize community virus levels and spread in specific locations. Now is a timely call to action for equitably protecting health in the United States, which can be guided with intentional and inclusive wastewater monitoring.

Sustainability Analysis: Large-Scale Desalination Implications For Coastal California, Elizabeth H. Whitford

Master's Projects and Capstones

In response to prolonged drought, desalination is gaining popularity as an alternative water production method for fresh water. However, water desalting technology poses concerns; the process is energy intensive, creates brine waste, and has the potential to damage sensitive coastal ecosystems. Significant research is available on the technological, economic, and energy efficiency aspects of desalination, while only a small percentage of the current literature focuses on environmental impacts. This research analyzes the desalination literature holistically in terms of both energy consumption and environmental impacts by conducting 1) a historical and current state review of the sector, 2) a technology analysis …

Evaluating The Ability Of Constructed Intertidal Eastern Oyster (Crassostrea Virginica) Reefs To Address Shoreline Erosion In South Carolina, Peter R. Kingsley-Smith, Andrew W. Tweel, Sharleen P. Johnson, Gary W. Sundin, Michael S. Hodges, Benjamin W. Stone, Gregory D. Sorg, Denise M. Sanger

Journal of South Carolina Water Resources

The application of nature-based solutions to address shoreline erosion and the loss of salt marsh in coastal South Carolina has centered around the creation of intertidal oyster (Crassostrea virginica) reefs that act as natural breakwaters. The installation of such living shoreline materials often results in a rapid accumulation of fine sediments, followed by wild oyster recruitment to suitable materials, and then more gradually the growth of salt marshes (primarily Spartina alterniflora). Leveraging more than two decades of oyster reef restoration and living shorelines research at the South Carolina Department of Natural Resources, this study quantitatively assessed performance rates for both …

Uncover The Underground : Distribution And Population Status Of Blind Snakes And Bogadek’S Burrowing Lizards, Man Ho Chan

Lingnan Theses (MPhil & PhD)

Globally, 28% of the reptiles are fossorial. Fossorial reptiles, which perform important ecological functions, such as being ecosystem engineers, top predators and bioindicators, are indispensable members of the soil ecosystem. However, the ecology of fossorial reptiles is relatively little known because of their cryptic behavior and rarity. In Hong Kong, there are four species of fossorial reptile, three of which are rare and of potential conservation concern. Among the four fossorial reptile species that occur in Hong Kong, Indotyphlops lazelli and Dibamus bogadeki, are endemic to Hong Kong and are globally threatened species. On the other hand, the distribution …

Online Dashboards For Sars-Cov-2 Wastewater Data Need Standard Best Practices: An Environmental Health Communication Agenda., Colleen C. Naughton, Rochelle H. Holm, Nancy J. Lin, Brooklyn P. James, Ted Smith

Faculty and Staff Scholarship

The COVID-19 pandemic has highlighted the benefits of wastewater surveillance to supplement clinical data. Numerous online information dashboards have been rapidly, and typically independently, developed to communicate environmental surveillance data to public health officials and the public. In this study, we review dashboards presenting SARS-CoV-2 wastewater data and propose a path toward harmonization and improved risk communication. A list of 127 dashboards representing 27 countries was compiled. The variability was high and encompassed aspects including the graphics used for data presentation (e.g., line/bar graphs, maps, and tables), log versus linear scale, and 96 separate ways of labeling SARS-CoV-2 wastewater concentrations. …

Characterizing Spatial Variability In Soil Co2 Fluxes In The Chihuahuan Desert Using Geostatistical Techniques, Viridiana Orona

Open Access Theses & Dissertations

Spatial variability in soil CO2 efflux across landscapes is an important feature of the â??Critical Zoneâ?? within dryland ecosystems. In dryland critical zones, resources are often distributed in patches or resource islands. Although this is particularly true in natural settings, the significance of spatial variability in CO2 efflux and its patterns also extends to dryland agriculture. In both irrigated and unirrigated systems, human management practices can significantly impact both organic and inorganic carbon cycling processes, highlighting the importance of studying CO2 efflux in these systems. We examined the spatial patterns of soil CO2 efflux and quantified the magnitude and scale …

Detection Of A Diverse Endophyte Assemblage Within Fungal Communities Associated With The Arundo Leaf Miner, Lasioptera Donacis (Diptera: Cecidomyiidae), Marie-Claude Bon, John A. Goolsby, Guy Mercadier, Fatiha Guermache, Javid Kashef, Massimo Cristofaro, Ann T. Vacek, Alan Kirk

School of Earth, Environmental, & Marine Sciences Faculty Publications

The larvae of Lasioptera donacis Coutin feed on fungal communities lining galleries within the mesophyll of leaf sheaths of Arundo donax in an aggregative manner. It has been stated that L. donacis could have established a fundamental symbiotic relationship with one fungus, although the fungal composition of these communities remains unsettled. Using a culture-dependent approach and ITS sequencing, the present work characterizes and compares the fungal communities associated with L. donacis in Eurasia with the endophytes of A. donax in Texas where L. donacis is absent. The 65 cultivable isolates obtained from L. donacis fungal communities were sorted into 15 …

Predicting Groundwater Spring Locations From Topographic And Climatic Data Using Maxent Modeling, Ayten Ece Koc

USF Tampa Graduate Theses and Dissertations

The World Resources Institute reveals that 17 countries face extremely high levels of water stress. Moreover, with increasing population and industrialization, the gap between water supply and demand increases day by day around the world. Groundwater is a key freshwater source, and springs are important resources as they enable to access groundwater. Therefore, it is crucial to monitor, protect, and manage groundwater springs. The first step in spring management is to recognize and define freshwater resources and to determine the locations of groundwater springs that serve as natural discharge points. Traditionally, field studies have been employed to determine the locations …

Agroforestry For The Future: Motivations Behind Tasmanian Farmers Planting Trees, Josh Lipp

Independent Study Project (ISP) Collection

Agroforestry is the act of combining farming and tree planting, and many Tasmanian farmers are starting to plant trees on their properties for multiple reasons. Through conducting 9 interviews with farmers and researchers and visiting field sites, 3 main themes were identified to answer the question: why are Tasmanian farmers planting trees, and what are the benefits and downsides to agroforestry? Interviews help us understand farmers’ perceptions of agroforestry, and field data collection will prove the benefits of agroforestry in the future. Tasmania was chosen as the location of study as it is a state in Australia that largely focuses …

Benthic Habitat Mapping Of Mountain Top Bank Within The Northern Gulf Of Mexico Through Integrated Geophysical And Visual Data Analysis, Bethany Pertain

Master's Theses

Mesophotic coral ecosystems (MCEs) are among the seafloor ecosystems that have been poorly studied throughout the world’s oceans, but they are a vital and diverse ecosystem that should be prioritized for future mapping and ecological studies. Priority should be given to them because they possess natural, social, and economic values, and face a variety of threats, all of which, if not better understood will result in the loss of this unique ecosystem. Insights into these ecosystems, among other deep-sea environments, are lacking due to difficulty accessing them, inherent lag between data collection by an autonomous system and observation by a …

Primary Production Modeling Identifies Restoration Targets For Shifting Shallow, Eutrophic Lakes To Clear-Water Regimes, Leighton King, Janice Brahney, Scott Daly, Michael J. Paul, Kateri R. Salk, Soren Brothers

Watershed Sciences Faculty Publications

Benthic primary production (BPP) plays an important functional role in lakes, improving water quality by stabilizing clear-water regimes. Shallow, eutrophic lakes lacking BPP communities can be difficult to restore because self-stabilizing feedbacks of phytoplankton dominance can impede the establishment of BPP. BPP in lakes is light limited, and ecosystem models can provide guidance for determining the water clarity necessary to re-establish BPP dominance. We developed a multi-tiered framework for the restoration of shallow, eutrophic lakes that incorporates multiple turbidity sources, lake morphometry, and water-level fluctuations to determine water-clarity thresholds above which BPP dominance may be established. We present a case …

Cascading Effects Of Cover Crops On The Subsequent Cash Crop Defense Against The Polyphagous Herbivore Fall Armyworm (Spodoptera Frugiperda), Adegboyega Fajemisin, Alexis Racelis, Rupesh R. Kariyat

School of Earth, Environmental, & Marine Sciences Faculty Publications

Simple Summary

Although studies have started to show that the effects of cover crops can translate into the cash cropping season, there is little information on the cascading effects of cover crops on the subsequent cash crop defenses, especially against polyphagous herbivores. To bridge this information gap, we conducted a field and laboratory study to investigate the cascading effects of different cover crop species on the subsequent cash crop defense against the polyphagous herbivore fall armyworm (Spodoptera frugiperda) across three fields in the Lower Rio Grande Valley in south Texas. Our field and laboratory results revealed that cover crop treatments …

Development Of A Benchmark Eddy Flux Evapotranspiration Dataset For Evaluation Of Satellite-Driven Evapotranspiration Models Over The Conus, John M. Volk, Justin Huntington, Forrest S. Melton, Richard Allen, Martha C. Anderson, Joshua B. Fisher, Ayse Kilic, Gabriel Senay, Gregory Halverson, Kyla Knipper, Blake Minor, Christopher Pearson, Tianxin Wang, Yun Yang, Steven Evett, Andrew N. French, Richard Jasoni, William Kustas

School of Natural Resources: Faculty Publications

A large sample of ground-based evapotranspiration (ET) measurements made in the United States, primarily from eddy covariance systems, were post-processed to produce a benchmark ET dataset. The dataset was produced primarily to support the intercomparison and evaluation of the OpenET satellite-based remote sensing ET (RSET) models and could also be used to evaluate ET data from other models and approaches. OpenET is a web-based service that makes field-delineated and pixel-level ET estimates from well-established RSET models readily available to water managers, agricultural producers, and the public. The benchmark dataset is composed of flux and meteorological data from a variety of …

Role Of Social Determinants Of Health In Differential Respiratory Exposure And Health Outcomes Among Children, Jagadeesh Puvvula, Jill A. Poole, Yeongjin Gwon, Eleanor G. Rogan, Jesse E. Bell

School of Natural Resources: Faculty Publications

Background Attributes defining the Social Determinants of Health (SDoH) are associated with disproportionate exposures to environmental hazards and differential health outcomes among communities. The dynamics between SDoH, disproportionate environmental exposures, and differential health outcomes are often specific to micro-geographic areas.

Methods This study focused on children less than 20 years of age who lived in Douglas County, Nebraska, during 2016–2019. To assess the role of SDoH in differential exposures, we evaluated the association between SDoH metrics and criteria pollutant concentrations and the association between SDoH and pediatric asthma exacerbations to quantify the role of SDoH in differential pediatric asthma outcomes. …

Panarchy Theory For Convergence, Shana M. Sundstrom, David G. Angeler, Jesse Bell, Michael J. Hayes, Jennifer Hodbod, Babak Jalalzadeh‑Fard, Rezaul Mahmood, Elizabeth Vanwormer, Craig R. Allen

School of Natural Resources: Faculty Publications

Coping with surprise and uncertainty resulting from the emergence of undesired and unexpected novelty or the sudden reorganization of systems at multiple spatiotemporal scales requires both a scientific process that can incorporate diverse expertise and viewpoints, and a scientific framework that can account for the structure and dynamics of interacting social-ecological systems (SES) and the inherent uncertainty of what might emerge in the future. We argue that combining a convergence scientific process with a panarchy framework provides a pathway for improving our understanding of, and response to, emergence. Emergent phenomena are often unexpected (e.g., pandemics, regime shifts) and can be …

Role Of Social Determinants Of Health In Differential Respiratory Exposure And Health Outcomes Among Children, Jagadeesh Puvvula, Jill A. Poole, Yeongjin Gwon, Eleanor G. Rogan, Jesse E. Bell

Daugherty Water for Food Global Institute: Faculty Publications

Background Attributes defining the Social Determinants of Health (SDoH) are associated with disproportionate exposures to environmental hazards and differential health outcomes among communities. The dynamics between SDoH, disproportionate environmental exposures, and differential health outcomes are often specific to micro-geographic areas.

Methods This study focused on children less than 20 years of age who lived in Douglas County, Nebraska, during 2016–2019. To assess the role of SDoH in differential exposures, we evaluated the association between SDoH metrics and criteria pollutant concentrations and the association between SDoH and pediatric asthma exacerbations to quantify the role of SDoH in differential pediatric asthma outcomes. …

Changing Blow Fly (Diptera: Calliphoridae) Populations In Orlando, Florida, United States, Amanda Roe, Russell J. Barnes, Leon G. Higley, Neal H. Haskell

School of Natural Resources: Faculty Publications

Blow flies (Diptera: Calliphoridae) were collected from various carrion baits in Orlando, Florida over 2 periods: Jun 2009 to Sep 2009 and Apr 2010 to Oct 2010. In a previous study conducted from 2002 to 2004 the dominant blow fly in Orlando, Florida, was Lucilia coeruleiviridis Macquart (Gruner et al. 2007). This collection documents a shift to Chrysomya megacephala Fabricius, as the most dominant blow fly species found in Orlando, Florida in 2009 to 2010. These field results have potential forensic implications, particularly in the analysis of cold cases.

Changing Blowfly (Diptera: Calliphoridae) Populations In Orlando, Florida, United States, A. Roe, R. J. Barnes, Leon G. Higley, N. H. Haskell

School of Natural Resources: Faculty Publications

No abstract provided.

Understory Arthropod Diversity In A Mixed Dryland Ecosystem, Hawai‘I, Matthew J. Madeiros, William P. Haines, Clare E. Aslan, Aaron B. Shiels, Asa Aue, Christina T. Liang

United States Department of Agriculture Wildlife Services: Staff Publications

Tropical drylands are among the most threatened ecosystems worldwide, and fewer than 10% of tropical dry forests in Hawai‘i remain intact. Terrestrial arthropods comprise most of the endemic fauna on many islands, including Hawai‘i, where they provide ecosystem services such as pollination, decomposition, and a reliable prey base for predators. The objective of our study was to measure understory arthropod diversity and relative abundances in two common habitat types within dryland Hawai‘i—a non-native grassland, dominated by Cenchrus setaceus (fountain grass) with few native shrubs, and a native woodland, dominated by Metrosideros polymorpha (‘ōhi‘a). We used generalized additive models to examine …

Drought Influences Annual Survival Of Painted Turtles In Western Nebraska, Allyson N. Beard, Larkin Powell

School of Natural Resources: Faculty Publications

Aquatic habitats in the Great Plains of North America have increased risk of droughts under climate forecasts. Droughts have the potential to influence the population dynamics of pond turtles, and long-term studies are useful to assess the impact of climatic variation on turtles. We compiled twelve years of mark-recapture data for painted turtles (Chrysemys picta) captured in a pond in Keith County, Nebraska during 2005–2016 that included two periods of drought. We used a robust design analysis to investigate influences on population size, annual survival, temporary immigration, and capture probability. Estimates of the annual population size ranged from 92 (CI: …

Refining The Use Of Stable Isotope Analysis In Detecting Wildlife Laundering, Kevin Guilfoyle

Electronic Theses and Dissertations, 2020-2023

The international wildlife trade has caused significant declines in wild populations. Captive breeding can reduce the pressure on wild populations caused by overcollection, but if not properly monitored, wildlife laundering can lead to further population declines. Improving the forensic ability to detect wildlife laundering will assist in monitoring the wildlife trade and enforcing regulations, thereby aiding recovery of wild populations. Stable isotope analysis has grown in importance as a forensic tool, but improvements are needed. Here, stable isotope analysis (δ13C) on eggshells of captive bred and wild sourced island apple snails (Pomacea maculata) distinguished between the two; eggshells of captive …

Dormant Propagules In Demographic Studies: A Recurrent Bias And Potential Solutions, Federico Borghesi

Graduate Thesis and Dissertation 2023-2024

In the face of unprecedented anthropogenic change, we increasingly turn to emergent technologies and extensive data sets for solutions that complement much needed systemic changes in our societies. These technological solutions, however, must be approached with care. We must recognize and address biases in the way data has been accumulated. In demographic studies, dormant life stages, such as seed banks, and other cryptic factors have often been neglected. The potential consequences of these omissions have been extensively described in the literature. In the first chapter, I analyze patterns of seed bank omissions in demographic models, finding unjustified omissions are widespread …