Digital Commons Network^™

An Opportunistic Survey Reveals An Unexpected Coronavirus Diversity Hotspot In North America, Hon S. Ip, Kathryn M. Griffin, Jeffrey D. Messer, Megan E. Winzeler, Susan A. Shriner, Mary Lea Killian, Mia Kim Torchetti, Thomas J. Deliberto, Brian R. Amman, Caitlin M. Cossaboom, R. Reid Harvey, Natalie M. Wendling, Hannah Rettler, Dean Taylor, Jonathan S. Towner, Casey Barton Behravesh, David S. Blehert

United States Department of Agriculture Wildlife Services: Staff Publications

In summer 2020, Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) was detected on mink farms in Utah. An interagency One Health response was initiated to assess the extent of the outbreak and included sampling animals from on or near affected mink farms and testing them for SARS-CoV-2 and non-SARS coronaviruses. Among the 365 animals sampled, including domestic cats, mink, rodents, raccoons, and skunks, 261 (72%) of the animals harbored at least one coronavirus. Among the samples that could be further characterized, 127 alphacoronaviruses and 88 betacoronaviruses (including 74 detections of SARS-CoV-2 in mink) were identified. Moreover, at least 10% (n …

Variations, Validations, Degradations, And Noninvasive Determination Of Pregnancy Using Fecal Steroid Metabolites In Free-Ranging Pronghorn, Cole A. Bleke, Eric M. Gese, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Pregnancy status is a key parameter used to assess reproductive performance of a species as it represents a starting point for measuring vital rates. Vital rates allow managers to determine trends in populations such as neonate survival and recruitment; two important factors in ungulate population growth rates. Techniques to determine pregnancy have generally involved capture and restraint of the animal to obtain blood samples for determining serum hormone levels. Non-invasive pregnancy assessment, via feces, eliminates any hazards between handler and animal, as well as removes handling-induced physiological biases. Using noninvasive fecal sampling, we conducted hormone validations, investigated pregnancy rates, and …

Satellite-Detected Ammonia Changes In The United States: Natural Or Anthropogenic Impacts, Yaqian He, Rongting Xu, Stephen A. Prior, Di Yang, Anni Yang, Jian Chen

United States Department of Agriculture Wildlife Services: Staff Publications

Ammonia (NH3) is the most abundant alkaline component and can react with atmospheric acidic species to form aerosols that can lead to numerous environmental and health issues. Increasing atmospheric NH3 over agricultural regions in the US has been documented. However, spatiotemporal changes of NH3 concentrations over the entire US are still not thoroughly understood, and the factors that drive these changes remain unknown. Herein, we applied the Atmospheric Infrared Sounder (AIRS) monthly NH3 dataset to explore spatiotemporal changes in atmospheric NH3 and the empirical relationships with synthetic N fertilizer application, livestock manure production, and climate factors across the entire US …

Cytoarchitectural Characteristics Associated With Cognitive Flexibility In Raccoons, Joanna Jacob, Molly Kent, Sarah Benson-Amram, Suzana Herculano-Houzel, Mary Ann Raghanti, Emily Ploppert, Jack Drake, Bilal Hindi, Nick R. Natale, Sarah Daniels, Rachel Fanelli, Anderson Miller, Tim Landis, Amy Gilbert, Shylo Johnson, Annie Lai, Molly Hyer, Amanda Rzucidlo, Chris Anchor, Stan Gehrt, Kelly Lambert

United States Department of Agriculture Wildlife Services: Staff Publications

With rates of psychiatric illnesses such as depression continuing to rise, additional preclinical models are needed to facilitate translational neuroscience research. In the current study, the raccoon (Procyon lotor) was investigated due to its similarities with primate brains, including comparable proportional neuronal densities, cortical magnification of the forepaw area, and cortical gyrification. Specifically, we report on the cytoarchitectural characteristics of raccoons profiled as high, intermediate, or low solvers in a multiaccess problem-solving task. Isotropic fractionation indicated that high-solvers had significantly more cells in the hippocampus (HC) than the other solving groups; further, a nonsignificant trend suggested that this …

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Draft Final Rmap Aware Early Head Start Soil Remedial Action Work Plan (Rawp), Mike Mcanulty

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Butte Priority Soils Operable Unit (Bpsou) Insufficiently Reclaimed Sites - Field Sampling And Investigation Plan (Fsp) Bres No. 104 - Colorado Dump, Mike Mcanulty

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Managing The Energy Trilemma In The Philippines, Josef Teofisto T. Yap, Aaron Joseph P. Gabriola, Chrysogonus F. Herrera

Ateneo School of Government Publications

Background

The transition to an energy mix with lower carbon emissions is hampered by the existence of the so-called Energy Trilemma. The primary consequence is a trade-off between various objectives of energy policy, e.g., equity and sustainability. This conflict can lead to policy gridlock if policymakers are unable to prioritize the goals. This paper proposes a framework and methodology to manage the trilemma by applying methods related to multi-criteria decision-making in order to assign weights to the various components of the trilemma.

Results

Following the International Energy Agency (IEA), an expanded concept of energy security is adopted and translates to …

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

The Relative Importance Of Wind-Driven And Chimney Effect Cave Ventilation: Observations In Postojna Cave (Slovenia), Lovel Kukuljan, Franci Gabrovsek, Matthew Covington

International Journal of Speleology

Density-driven chimney effect airflow is the most common form of cave ventilation, allowing gas exchange between the outside and the karst subsurface. However, cave ventilation can also be driven by other mechanisms, such as barometric changes or pressure differences induced by the outside winds. We discuss the mechanism and dynamics of wind-driven ventilation using observations in Postojna Cave, Slovenia. We show how seasonal airflow patterns driven by the chimney effect are substantially modified by outside winds. Wind flow over irregular topography forms near-surface air pressure variations and thus pressure differences between cave entrances at different locations. These pressure differences depend …

A Systems Approach To Understanding Piping Plover Production On Off-Channel Sandpits Along The Central Platte River, Taylor Morgan Cassidy

Biology Theses, Dissertations, and Student Creative Activity

Anthropogenic changes in land use, exploitation of natural resources, climate change, and habitat loss create difficulties managing and conserving species of concern. Managers are often forced to make decisions with incomplete information and much uncertainty. Unsuccessful attempts to manage for and conserve species in the past, may have resulted from failures to recognize the complexity of systems, resulting in actions that may have had unintended consequences. Thus, applying Systems Thinking and System Dynamics is appropriate for understanding what factors influence species success and evaluating what management actions may be implemented to help achieve conservation targets while minimizing negative impacts to …

Forest Fire Effects On The Temporal Variability Of Landscape Snow Albedo Relative To Burn Severity, Max Gersh

Dissertations and Theses

Snow-water storage is decreasing, while forest fires are increasing in duration, size, frequency, and intensity, due to climate change. Most forest fires occur in the seasonal snow zone, altering snow mass and energy balance for many years following fire. Following forest fires, Surface snow albedo (SSA) decreases, as light absorbing particles (LAP), particularly black carbon (BC) produced in forest fires get deposited throughout the snowpack, altering snowpack energy balance driving earlier snowmelt in burned forests. While SSA decreases, landscape snow albedo (LSA) increases following fire, as more of the snow-covered surface becomes visible beneath the burned forest canopy, brightening the …

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Massive And Rapid Predominantly Volcanic Co2 Emission During The End-Permian Mass Extinction, Ying Cui, Mingsong Li, Elsbeth E. Van Soelen, Francien Peterse, Wolfram M. Kürschner

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

The end-Permian mass extinction event (∼252 Mya) is associated with one of the largest global carbon cycle perturbations in the Phanerozoic and is thought to be triggered by the Siberian Traps volcanism. Sizable carbon isotope excursions (CIEs) have been found at numerous sites around the world, suggesting massive quantities of ¹³C-depleted CO2 input into the ocean and atmosphere system. The exact magnitude and cause of the CIEs, the pace of CO2 emission, and the total quantity of CO2, however, remain poorly known. Here, we quantify the CO2 emission in an Earth system model based on new compound-specific carbon isotope …

A Proposed Framework For The Development And Qualitative Evaluation Of West Nile Virus Models And Their Application To Local Public Health Decision-Making, Alexander C. Keyel, Morgan E. Gorris, Ilia Rochlin, Johnny A. Uelmen, Luis F. Chaves, Gabriel L. Hamer, Imelda K. Moise, Marta Shocket, A Marm Kilpatrick, Nicholas B. Defelice, Justin K. Davis, Eliza Little, Patrick Irwin, Andrew J. Tyre, Kelly Helm Smith, Chris L. Fredregill, Oliver Elison Timm, Karen M. Holcomb, Michael C. Wimberly, Matthew J. Ward, Christopher M. Barker, Charlotte G. Rhodes, Rebecca L. Smith

School of Natural Resources: Faculty Publications

West Nile virus(WNV) is a globally distributed mosquito-borne virus of great public health concern. The number of WNV human cases and mosquito infection patterns vary in space and time. Many statistical models have been developed to understand and predict WNV geographic and temporal dynamics. However, these modeling efforts have been disjointed with little model comparison and inconsistent validation. In this paper, we describe a framework to unify and standardize WNV modeling efforts nationwide. WNV risk, detection, or warning models for this review were solicited from active research groups working in different regions of the United States. A total of 13 …

Becoming A Place Of Unrest : Environmental Crisis And Ecophenomenological Praxis, Robert Booth

Ohio University Press Open Access Books

The key to mitigating the environmental crisis isn’t just based on science; it depends upon a profound philosophical revision of how we think about and behave in relation to the world.

Our ongoing failure to interrupt the environmental crisis in a meaningful way stems, in part, from how we perceive the environment—what Robert Booth calls the "more-than-human world.” Anthropocentric presumptions of this world, inherited from natural science, have led us to better scientific knowledge about environmental problems and more science-based—yet inadequate—practical “solutions.” That’s not enough, Booth argues. Rather, he asserts that we must critically and self-reflexively revise how we perceive …

Butte Priority Soils Operable Unit (Bpsou) Unreclaimed Sites -Draft Final Field Sampling Plan (Fsp) #4: Ur-16 And Ur-21, Mike Mcanulty

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

A Dispersive Force Model Of Caribbean Island Biogeography, Anthony Sarkiss

The Yale Undergraduate Research Journal

Framework-based models serve as an important tool to describe, predict and manage ecological systems. In this paper I construct one such model, a dispersive force model based on MacArthur and Wilson’s (1963) theory of island biogeography, in order to assess island species richness with varying climatic patterns. Specifically, I use island–mainland distance (d), insular area (A), a climatic dispersal parameter (f), and a climatic disturbance parameter (h) to calculate the insular species richness ratio at equilibrium. To test this model through hurricane impact on marine islands, it was executed with data from islands of the Dutch Caribbean. Future climatic conditions …

Evaluation Of Regional Climate Models (Rcms) Using Precipitation And Temperature-Based Climatic Indices: A Case Study Of Florida, Usa, Yared Bayissa, Assefa Melesse, Mahadev Bhat, Tsegaye Tadesse, Andualem Shiferaw

School of Natural Resources: Faculty Publications

The overarching objective of this study was to evaluate the performance of nine precipitation-based and twelve temperature-based climatic indices derived from four regional climate models (CRCM5-UQUAM, CanRCM4, RCA4 and HIRHAM5) driven by three global circulation models (CanESM2, EC-EARTH and MPI-ESM-LR) and their ensemble mean for the reference period of 31 years (1975–2005). The absolute biases, pattern correlation, the reduction of variance (RV) and the Standardized Precipitation Evapotranspiration Index (SPEI at 3-, 6- and 12-month aggregate periods) techniques were used to evaluate the climate model simulations. The result, in general, shows each climate model has a skill in reproducing at least …

Otoliths Of South-Western Australian Fish: A Photographic Catalogue, Chris Dowling, Kim Smith, Elaine Lek, Joshua Brown

Fisheries Research Reports

Due to the species-specific nature of otoliths and given they are often the only part of the fish preserved when fish die, otolith catalogues can be used in numerous applications, such as diet studies in fish eating animals, including pinnipeds, fish and sea birds; archaeological purposes such as reconstructing indigenous people’s diets from otoliths found in middens or evolutionary history of fish species by comparing fossilized otoliths. Given the unique mixture of subtropical and temperate fish, including many endemic species that occur off the southwest corner of WA having a catalogue for this area is extremely important for people working …

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Silver Bow Creek/Butte Area Npl Site Butte Priority Soils Operable Unit, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Plague Exposure In Mammalian Wildlife Across The Western United States, Sarah N. Bevins, Jeffrey C. Chandler, Nicole Barrett, Brandon S. Schmit, Gerald W. Wiscomb, Susan A. Shriner

United States Department of Agriculture Wildlife Services: Staff Publications

Plague is caused by a bacterial pathogen (Yersinia pestis) that can infect a wide range of mammal species, but its presence in wildlife is often underappreciated. Using a large-scale data set (n = 44,857) that details the extent of Y. pestis exposure in wildlife, we document exposure in 18 wildlife species, including coyotes (Canis latrans), bobcats (Lynx rufus), and black bears (Ursus americanus). Evidence of plague activity is widespread, with seropositive animals detected in every western state in the contiguous United States. Pathogen monitoring systems in wildlife that are both large scale …

Improving Animal Monitoring Using Small Unmanned Aircraft Systems (Suas) And Deep Learning Networks, Meilun Zhou, Jared A. Elmore, Sathishkumar Samiappan, Kristine O. Evans, Morgan Pfeiffer, Bradley F. Blackwell, Raymond B. Iglay

United States Department of Agriculture Wildlife Services: Staff Publications

In recent years, small unmanned aircraft systems (sUAS) have been used widely to monitor animals because of their customizability, ease of operating, ability to access difficult to navigate places, and potential to minimize disturbance to animals. Automatic identification and classification of animals through images acquired using a sUAS may solve critical problems such as monitoring large areas with high vehicle traffic for animals to prevent collisions, such as animal-aircraft collisions on airports. In this research we demonstrate automated identification of four animal species using deep learning animal classification models trained on sUAS collected images. We used a sUAS mounted with …

Physicochemical And Bacteriological Water Quality Parameters In Relation To Land-Use Practices At A Rural Catchment, Mbinga District, Tanzania, Harieth Hellar-Kihampa, Patrick Isdory Ndunguru

Tanzania Journal of Science

Data on physicochemical water quality parameters and contamination levels is crucial for protection and sustainable utilization of water resources. This study assessed the physicochemical water quality parameters, faecal coliform bacteria and nutrient loads in water at a catchment used for municipal supply in Mbinga District, Tanzania. Samples were seasonally collected from three areas characterized by distinct geographical features, settlement patterns and land-use practices, and analyzed using standard analytical protocols. Data were subjected to paired-sampled t-test and cluster analysis. The parameters varied as follows: pH (4.75–6.83); temperature (16.4–26.2 ºC); electrical conductivity (14.6–121.1 µS/cm); total dissolved solids (7.0–23.2 mg/L); total suspended solids …