Digital Commons Network^™

Infectivity And Physiological Effects Of White Spot Syndrome Virus (Wssv) In Farmed Louisiana Red Swamp Crayfish (Procambarus Clarkii), Barcley Talon Pace

LSU Master's Theses

The red swamp crayfish, Procambarus clarkii, represents an important aquaculture species responsible for over half of all commercial aquaculture profits in Louisiana. White spot syndrome virus (WSSV) is highly pathogenic and induces mass mortality in crustacean aquaculture operations worldwide. Crayfish lack the adaptive ability of the vertebrate immune system, and must depend on primitive, innate immune responses to combat viral infections. This study aims to investigate the dose-response of WSSV in P. clarkii and to examine viral-host interactions by examining the biochemical and immunological changes induced by WSSV infection in this species. Viable viral particles were isolated from naturally infected …

Efficacy And Feasibility Of Alginate Bait For The Louisiana Commercial Blue Crab (Callinectes Sapidus) Fishery, Elizabeth Lorraine Clowes

LSU Master's Theses

Louisiana leads all U.S. states in blue crab (Callinectes sapidus) landings, but high fuel and bait costs have hindered commercial fishing productivity of Louisiana in recent years. The primary baitfish, Atlantic menhaden (Brevoortia tyrannus), has steadily increased in price and decreased in availability, while crab prices remain low. To reduce costs for fishermen, an alternative bait was developed that incorporates shrimp waste into a semi-rigid alginate matrix. Lab testing and preliminary field tests show that shrimp-alginate bait may be a suitable alternative to menhaden for Louisiana crab fishermen. I evaluated bait performance by conducting field sampling to compare catch rates …

Immune Gene Variation And Susceptibility To Upper Respiratory Tract Disease In Gopher Tortoises, Jean Pierre Elbers

LSU Doctoral Dissertations

The immune system defends the host from bacteria, fungi, parasites, and viruses. The immune system is partially under genetic control through immune response genes, such as those of the major histocompatibility complex (MHC) whose nucleotide variation influences the host’s ability to recognize foreign pathogens and can influence disease susceptibility. Populations of threatened species generally possess low levels of genetic variation, and genetically depauperate hosts may be at greater risk of infectious disease contributing to extirpations because they also possess low immunogenetic variation. My dissertation examines the relationship between immunogenetic variation and disease susceptibility and the factors that influence innate immune …

Temporal Dynamics Of Benthic Responses To Habitat Disturbance In Coastal Plain Headwaters Of Southwestern Louisiana, Catherine Elizabeth Murphy

LSU Doctoral Dissertations

Weak biotic responses to habitat gradients within Northern Gulf of Mexico streams have been attributed to spatial and temporal variability. Landscape and in-stream habitat descriptions are presented for watersheds within Pleistocene terraces of the Coastal Plains geomorphic province of Louisiana, USA. Geologic influences on stream habitat were inferred by comparing multivariate ordinations on physicochemical measurements between terraces. Seasonal variability was assessed during a drought year (2011) and a typical water year (2013). Within coastal plains of Louisiana, stream condition was more similar within terraces than within river basins. Permutational MANOVA models indicated significantly different stream habitat between Uplands and Prairie, …

Influences On The Successful Implementation Of The Convention On Wetlands Of International Importance (Ramsar) Among Member Countries, Aziza Saud Al Adhoobi

LSU Master's Theses

Wetlands are very dynamic ecosystems and are featured all over the world’s landscape. Recent studies suggested that wetlands are in continuous decline, both and quantity and quality and between 64-71% is the estimated global wetland loss in the 20th century (Davidson 2014; Gardner et al., 2015). Therefore, as wetland loss increases around the world, more effort to protect and restore wetland habitat, values, and services become crucial. For this reason, the Ramsar Convention was established four decades ago to highlight the severity of wetland loss and to produce guidelines that aim to guide Contracting Parties toward sustainable and efficient management …

Eastern Oyster Physiological Responses To Acute And Chronic Exposure To Suspended Sediments, Stephanie Bernasconi

LSU Master's Theses

Louisiana estuaries provide habitat for some of the most productive population of the eastern oyster, Crassostrea virginica in the Gulf of Mexico. Coastal alterations, including changes in river flow of the Mississippi River, sediment diversions, and climate change, are likely to impact areas supporting oyster production. Although oysters in Louisiana already experience periods of high total suspended sediment, these coastal alterations may increase duration, frequency, and concentration of high suspended sediment concentrations over oyster grounds, which could have significantly impact oyster physiology and production by affecting basic physiological functions of oysters. In this study, we measured effects of acute (1 …

Arsenic Speciation And Phytoremediation Modeling For Environmental Management, Sidney Joseph Marlborough

LSU Doctoral Dissertations

Arsenic has been used throughout recorded history but during the industrial revolution widespread use led to global environmental impact. The two forms that should be considered in environment management are arsenate and arsenite. The calculations of environmental risk for arsenic exposure relies the toxicity of arsenite however, in well aeriated surface soils arsenate may be the predominate form. Ecological risk assessments based on arsenite studies will lead to restrictive remediation requirements that do not adequately reflect the level of risk. Arsenate resembles phosphate and as such has a greater affinity for phytoremediation. Phytoremediation is one of the most viable and …

Temporal Variations Of Streamflow In A Mid-Latitude Eurasian Steppe Watershed In The Past Half Century, Xixi Wang

Civil & Environmental Engineering Faculty Publications

Previous studies either did not identify abrupt change or identified such change but did not exclude it from the detection of trend in streamflow. As a result, an overall downward trend might be erroneously detected as an upward trend because of abrupt increase, while an overall upward trend could be faked as a downward trend due to abrupt decrease. The objectives of this study were to: (1) present a methodology to analyze trend in streamflow in the presence of abrupt change; and (2) use this methodology to detect trend and extreme occurrence of streamflow in the Upper Balagaer River watershed, …

Interfacing Of Neuromorphic Vision, Auditory And Olfactory Sensors With Digital Neuromorphic Circuits, Anup Vanarse

Theses: Doctorates and Masters

The conventional Von Neumann architecture imposes strict constraints on the development of intelligent adaptive systems. The requirements of substantial computing power to process and analyse complex data make such an approach impractical to be used in implementing smart systems.

Neuromorphic engineering has produced promising results in applications such as electronic sensing, networking architectures and complex data processing. This interdisciplinary field takes inspiration from neurobiological architecture and emulates these characteristics using analogue Very Large Scale Integration (VLSI). The unconventional approach of exploiting the non-linear current characteristics of transistors has aided in the development of low-power adaptive systems that can be implemented …

A Life Cycle Analysis Of Land Use In Us Pork Production, Greg Thoma, Marty Matlock, Ben Putman, Jasmina Burek

Food Systems

The goal of this study was to analyze land use in the production of US pork using Life Cycle Assessment (LCA). LCA is a comprehensive methodology for quantitatively analyzing potential environmental impacts associated with complex systems. Identification of processes contributing to high environmental impacts often highlights opportunities for gains in efficiency, which can increase the profitability and sustainability of US pork. The environmental impact category analyzed in this assessment was land use. After reviewing existing information regarding land use in agriculture and livestock production, analysis for US pork production was performed at two scales: cradle-to-grave and cradle-to-farm gate. The cradle-to-grave …

Automatic Detection And Quantification Of Bluff Erosion Events In Single Image Series, Martin D. Hellwig

Graduate Masters Theses

Many communities along coastlines and riverbanks are threatened by water erosion and hence an accurate model to predict erosion events is needed in order to plan mitigation strategies. Such models need to rely on readily available meteorological data that may or may not be correlated with the occurrence of erosion events. In order to accurately study these potential correlations, researchers need a quantified time series index indicating the occurrence and magnitude of erosion in the studied area. We show that such an index can be obtained by creating and analyzing a single image series using relatively cheap consumer grade digital …

Marine Regional Planning Measures To Improve The Sustainability Of The Seaflower Mpa In The Colombian Caribbean Sea/, Sergio Ivan Rueda Forero

World Maritime University Dissertations

No abstract provided.

Quantifying The Adaptive Cycle, David G. Angeler, Craig R. Allen, Ahjond S. Garmestani, Lance H. Gunderson, Olle Hjerne, Monika Winder

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The adaptive cycle was proposed as a conceptual model to portray patterns of change in complex systems. Despite the model having potential for elucidating change across systems, it has been used mainly as a metaphor, describing system dynamics qualitatively. We use a quantitative approach for testing premises (reorganisation, conservatism, adaptation) in the adaptive cycle, using Baltic Sea phytoplankton communities as an example of such complex system dynamics. Phytoplankton organizes in recurring spring and summer blooms, a well-established paradigm in planktology and succession theory, with characteristic temporal trajectories during blooms that may be consistent with adaptive cycle phases. We used long-term …

Selection For Forage And Avoidance Of Risk By Woodland Caribou (Rangifer Tarandus Caribou) At Coarse Andlocal Scales, Madeleine T. Mcgreer, Erin E. Mallon, Lucas M. Vander Vennen, Philip A. Wiebe, James A. Baker, Glen S. Brown, Tal Avgar, Jevon Hagens, Andrew M. Kittle, Anna Mosser, Garrett M. Street, Doug E. B. Reid, Arthur R. Rodgers, Jennifer Shuter, Ian D. Thompson, Et Al.

Wildland Resources Faculty Publications

The relationship between selection at coarse and fine spatiotemporal spatial scales is still poorly understood. Some authors claim that, to accommodate different needs at different scales, individuals should have contrasting selection patterns at different scales of selection, while others claim that coarse scale selection patterns should reflect fine scale selection decisions. Here we examine site selection by 110 woodland caribou equipped with GPS radio‐collars with respect to forage availability and predation risk across a broad gradient in availability of both variables in boreal forests of Northern Ontario. We tested whether caribou selection for forage and avoidance of risk was consistent …

Utilizing Ecological Connectivity In California Desert Wilderness Preservation, Lauren Kahal

Master's Projects and Capstones

The Wilderness Act of 1964 gave the federal land management agencies—the National Park Service, United States Forest Service, U.S Fish and Wildlife Service, and Bureau of Land Management—the authority to identify, propose, and manage lands as wilderness. Wilderness, once approved by Congress for inclusion in the National Wilderness Preservation System, is offered the highest form of land preservation in the nation. However, the wilderness identification process used by the implementing agencies is based on a half-century old statute with an aging definition of wilderness. While designated wilderness can protect the plant and wildlife communities within its borders from direct anthropogenic …

Monitoring Biodiversity Of San Francisco Peninsula Grasslands Using Lepidoptera As A Bioindicator, Jonathan B. Sifuentes-Winter

Master's Projects and Capstones

San Francisco Peninsula grasslands have seen an influx of non-native invasive species starting in the 1500’s, threatening ecological stability by reducing biological diversity. To combat these invasive species, multiple public agencies have begun to adopt an integrated pest management (IPM) approach. This ecologically-based approach to pest management utilizes three controversial techniques, which are presently used or are under consideration for use on the San Francisco Peninsula: herbicide application, conservation grazing, and prescribed fire. In this paper, I will evaluate the use of the taxa Lepidoptera as a bioindicator of biodiversity to assess the environmental impacts of these techniques. The application …

The Role Of The State, Multinational Oil Companies, International Law & The International Community: Intersection Of Human Rights & Environmental Degradation Climate Change In The 21st Century Caused By Traditional Extractive Practices, The Amazon Rainforest, Indigenous People And Universal Jurisdiction To Resolve The Accountability Issue, Marcela Cabrera Luna

Master's Theses

Local, national and international conventions that protect indigenous sovereignty and their territories, where many of the resources are extracted from by multinational corporations (MNCs) particularly oil, the number one commodity of the world and cause of climate change, continue to be jeopardized because of the lack of a clear international legal framework that can protect them and potentially hold multinationals accountable for their actions. These practices are causing not only environmental issues to the indigenous and surrounding communities, but climate change is in fact, the real human rights issue of the 21^st century and it affects everyone. By using …

Photooxidation Reactions Of Small-Chain Methyl Esters, Aerosol Photoelectron Spectroscopy, And The Photodissociation Of Ethylenediamine, Giel Muller

Master's Theses

Research conducted at the University of San Francisco is presented within this masters thesis, including the Cl-initiated photooxidation reactions of methyl propanoate, methyl butanoate, and methyl valerate (pentanoate), the aerosol photoelectron spectroscopy of isoprene and gamma-valerolactone, and the TPEPICO investigation of ethylenediamine. Experiments were conducted at the Lawrence Berkeley National Lab Advanced Light Source (ALS), the National Synchrotron Radiation Research Center in Hsinchu City (NSRRC), and the University of Stockton in California, respectively.

Genetic Analysis Of The Henry Mountains Bison Herd, Dustin H. Ranglack, Lauren K. Dobson, Johan T. Du Toit, James Derr

Wildland Resources Faculty Publications

Wild American plains bison (Bison bison) populations virtually disappeared in the late 1800s, with some remnant animals retained in what would become Yellowstone National Park and on private ranches. Some of these private bison were intentionally crossbred with cattle for commercial purposes. This forced hybridization resulted in both mitochondrial and nuclear introgression of cattle genes into some of the extant bison genome. As the private populations grew, excess animals, along with their history of cattle genetics, provided founders for newly established public bison populations. Of the US public bison herds, only those in Yellowstone and Wind Cave National Parks (YNP …

When Addressing Climate Change, Don’T Forget Animal Agriculture, Aaron Matzke

Op-Eds from ENSC230 Energy and the Environment: Economics and Policies

As COP 21 closes in Paris, global animal agriculture is a topic that has eluded the international media. Animal agriculture is responsible for more global greenhouse gas emissions than transportation according to the U.N.’s Food and Agriculture Organization. With global population and prosperity rising, the global meat supply is expected to nearly double by 2050. This increase in production will only be achieved if significant steps are taken to promote sustainability through existing techniques globally, and to regulate air contamination in industrial feedlots in the United States. Alternative meat production methods, which have seen considerable investment recently, could supplement animal …

Integrated Step Selection Analysis: Bridgingthe Gap Between Resource Selection And Animal Movement, Tal Avgar, Jonathan R. Potts, Mark A. Lewis, Mark S. Boyce

Wildland Resources Faculty Publications

A resource selection function is a model of the likelihood that an available spatial unit will be used by an animal, given its resource value. But how do we appropriately define availability? Step selection analysis deals with this problem at the scale of the observed positional data, by matching each ‘used step’ (connecting two consecutive observed positions of the animal) with a set of ‘available steps’ randomly sampled from a distribution of observed steps or their characteristics. Here we present a simple extension to this approach, termed integrated step selection analysis (iSSA), which relaxes the implicit assumption that observed movement …

Engineering A Healthier Watershed: Middle School Students Use Engineering Design To Lessen The Impact Of Their Campus' Impervious Surfaces On Their Local Watershed, Elizabeth Claire Gardner

Dissertations and Theses

It is important that students understand not only how their local watershed functions, but also how it is being impacted by impervious surfaces. Additionally, students need experience exploring the scientific and engineering practices that are necessary for a strong STEM background. With this knowledge students can be empowered to tackle this real and local problem using engineering design, a powerful practice gaining momentum and clarity through its prominence in the recent Framework for K-12 Science Education. Twenty classes of suburban sixth-graders participated in a new five-week Watershed Engineering Design Unit taught by their regular science teachers. Students engaged in scientific …

Comparing The Geography Of Environmental Justice Guidelines, Fish Consumption Waterbodies, And Land Use/Land Cover In South Carolina, Matthew James Neet

Theses and Dissertations

Environmental justice (EJ) grew out of the Civil Rights movement of the 1960s, as well as grass roots organizations during the 1980s and early 1990s. However, it was not until President William J. Clinton signed Executive Order (EO) 12898 in 1994 that EJ became an official governmental policy. With this directive, federal agencies made EJ part of their daily operations. EO 12898 had two overriding goals, the fair treatment and meaningful involvement of all populations. As part of these goals, minority, low-income, and native populations would be analyzed for any disproportionate and adverse impacts on human or environmental health. Despite …

Making Walkable Communities, Katie Zuehlke

Op-Eds from ENSC230 Energy and the Environment: Economics and Policies

There is no doubt that global warming is happening. With all the rage about climate change and global warming people should be doing more about it than just reading about it in the news. We should be making efforts towards making changes on a local level. This in turn could grow to a national level with more and more people participating in the movement and actually make global changes, instead of just talking about it. When the scale of participants grows the scale of the changes made will grow as well and this will be the beginning of the changes …

Longevity Of Mineral Supplements Within The Soil And Associated Use By White-Tailed Deer, Brian C. Peterson, Keith D. Koupal, Andrew K. Schissel, Cody M. Siegel

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Humans have baited wildlife such as white-tailed deer (Odocoileus virginianus) for generations with the primary purpose of increasing hunting harvest success. Baiting regulation changes are often considered by state management agencies as they pertain to hunting opportunity, fair chase, and disease risk. Cervids require a variety of minerals to supplement biological processes, especially sodium (Na), calcium (Ca), and phosphorus (P). We developed artificial mineral supplement sites set in front of trail cameras to monitor deer use. Pooled soil samples were collected at mineral sites and compared to the surrounding area to determine the longevity of elevated minerals levels …

Effectiveness Of Agricultural Drainage Systems On Contaminant Mitigation: The Influence Of Landscape Properties, Oluwayinka Omolara Iseyemi

Student Theses and Dissertations

Agricultural drainage systems are considered innovative best management practices (BMP) capable of many ecological functions, including flood control, edge of field nutrient filtration, as well as habitat for wildlife. Being an integral part of the production landscape and needing no additional cost for establishment, their use has been promoted in agriculture as cost effective BMPs that can be voluntarily adopted by farmers. The current study evaluated the effectiveness of drainage ditches (as influenced by their landscape properties) in mitigating edge-of-field nutrient runoff and measured additional ecosystem services rendered by these systems. Two experimental drainage types [conventional and controlled (with weirs) …

Mitigating N2o Emissions From Soil: From Patching Leaks To Transformative Action, C. Decock, Juhwan Lee, M. Necpalova, Engil Isadora Pujol Pereira, D. M. Tendall, Johan Six

School of Earth, Environmental, & Marine Sciences Faculty Publications

Further progress in understanding and mitigating N2O emissions from soil lies within transdisciplinary research that reaches across spatial scales and takes an ambitious look into the future.

Geographic Variation, Null Hypotheses, And Subspecies Limits In The California Gnatcatcher: A Response To Mccormack And Maley, Robert M. Zink, Jeffrey G. Groth, Hernan Vázquez-Miranda

School of Natural Resources: Faculty Publications

We interpreted the results of nuclear DNA sequencing to be inconsistent with the recognition of California Gnatcatcher (Polioptila californica) subspecies. McCormack and Maley (2015) suggested that our data did support 2 taxa, one of which was P. c. californica, listed as Threatened under the Endangered Species Act (ESA). We summarize here how 2 sets of researchers with access to the same data reached different conclusions by including different analyses. We included the southern subspecies’ boundary from the taxonomy of Atwood (1991), the taxonomic basis for the ESA listing, which resulted in an Analysis of Molecular Variance that …

The First Bromeligenous Species Of Dendropsophus (Anura: Hylidae) From Brazil's Atlantic Forest, Rodrigo Barbosa Ferreira, Julián Faivovich, Karen H. Beard, José P. Pombal Jr

Wildland Resources Faculty Publications

We describe a new treefrog species of Dendropsophus collected on rocky outcrops in the Brazilian Atlantic Forest. Ecologically, the new species can be distinguished from all known congeners by having a larval phase associated with rainwater accumulated in bromeliad phytotelms instead of temporary or lentic water bodies. Phylogenetic analysis based on molecular data confirms that the new species is a member of Dendropsophus; our analysis does not assign it to any recognized species group in the genus. Morphologically, based on comparison with the 96 known congeners, the new species is diagnosed by its small size, framed dorsal color pattern, and …

A Sustainability Analysis Of Team Orange County’S Home Life Events During The U.S. Department Of Energy: 2015 Solar Decathlon, Lauren Sato, Alexandra Fw Sidun

Student Scholar Symposium Abstracts and Posters

This project will look at the U.S. Department of Energy’s 2015 Solar Decathlon and examine Chapman University’s involvement in Team Orange County. This project will further examine the Home Life sub-competition by studying the sustainability of the components of the two Home Life dinners, the movie night party, and the energy budget associated with each of the three events. Reviewing team documents and collecting data from affiliated team members will give us a wholesome overview of the efforts taken to achieve sustainability for the dinners and movie night. We found various practices were incorporated in the menu-concepts for the three …