Digital Commons Network^™

Wire Cutting Saw For Spinal Fusion Surgery, Connor Kilzer Kilzer, Kayla Hong, Kyle Himmelein

Biomedical Engineering

The purpose of this project was to design and prototype a spinal facetectomy tool which will minimize the risk of spinal nerve damage and standardize this procedure for all surgeons. This Final Report for Alphatec describes the scope of the project, the process to get to the final prototype of the device, along with a project timeline for the team. A background of current devices and their issues is included to illustrate the need for a new spinal facetectomy device. Within the scope of the project includes a list of customer requirements for the device and the process of translating …

Deep Ocean Vehicle (Dov) Scientific Payload, Nichole "Nikki" T. Arm, Mason Gariepy, Brianna Roberts, Kyle C. Walsh

General Engineering

This report aims to provide technical insight into the Deep Ocean Vehicle project performed by the Barrel Eye Explorers. The project was a part of the 2021-2022 Interdisciplinary Senior Project class at California Polytechnic State University, San Luis Obispo. The team consisted of Nikki Arm, Mason Gariepy, Brianna Roberts, and Kyle Walsh who were engineering students in the Mechanical, Materials, General, and Industrial engineering departments, respectively. This project was sponsored by Dr. Crow White and overseen by Karla Carichner. The project was a continuation of Nikki Arm’s internship with Global Ocean Design during the Summer of 2021. The lander, Deep …

Processing And Characterization Of Silicon Nitride For Rapid And Low-Level Detection Of Water Pathogens, Arielle H. Buchanan, Logan A. Chai

Materials Engineering

Water sanitation is a serious issue affecting the lives of many, and methods for assessing water cleanliness have been a major research interest for decades. Rapid and accurate water pathogen detection methods that can be performed in field applications have been a growing research focus, especially in low-income countries most affected by poor water quality. Silicon nitride was explored as a material for colorimetric water-pathogen sensing due to the large body of knowledge around its processing, and its isoelectric point. A bioassay of chlorophenol red-β-Dgalactopyranoside (CPRG) and β-galactosidase (β-gal) enzymes with Escherichia coli (E. coli) bacteria was used to examine …

In Situ Marine Biodegradation Of Poly(Lactic) Acid And Thermoplastic Starch Blends, Brittany Denicholas

Materials Engineering

Marine life has been suffering from macro- and microplastics since the inception of petroleum-based plastic. Bio-based biodegradable polymers such as PLA and TPS can help mitigate the damage done by petroleum plastics. Blending PLA and TPS can reduce the cost while preventing a significant effect on the material properties. PLA/TPS blend compositions such as 90/10, 80/20, 70/30 could be candidates for a solution. The PLA/TPS blends have been submerged in a marine environment at the Cal Poly Pier in Avila Beach for 8 weeks. Three sample sets containing three of each blend composition were collected every week and tested in …

Citric Or Acetic Acid Effects On The Crosslinking Of Pvoh, Samuel Carr, Erika Szaldobagyi

Materials Engineering

Transportation and shipping processes are the most dangerous times for food due to harsh handling and frequent temperature changes. Plain corrugated boxes cannot withstand the damp environment caused by melting ice that is used to keep foods cold and fresh. To minimize damage, a protective polymer film coating can be applied. These coatings can be unsafe when used with food and will lead to excess waste by limiting the recyclability of the boxes. The purpose of this project was to produce nontoxic crosslinked PVOH films to determine suitability for a cost effective, biodegradable, and repulpable corrugated box coating. Polyvinyl alcohol …

Soil Degradation Of A Plastic Blend Of Opuntia Ficusindica Juice, Animal Protein And Beeswax, Isabel A. Gamez, Daniel R. Kava

Materials Engineering

Since the introduction of single use plastics in the early 1900s, their usage has increased exponentially. Unfortunately, due to this exponential increase there are negative environmental implications of their production, which requires further consideration. Currently, there are various waste disposal practices for SUPs, including landfilling, incineration, and recycling. Recent data revealed that only 14 % of plastic waste was recycled, with 40% of plastic waste being landfilled, while the rest of the plastic waste was incinerated or released to the environment at 14 % and 32 %, respectively. A potential solution to the plastic waste issue is developing a polymer …

Eagle Medical Tray Denesting & Debris Removal Process, Nicholas Allen Ungefug, Noah Chavez, Susana Shu-Lin Okhuysen, Michael Augustine Pennington

Industrial and Manufacturing Engineering

Eagle Medical Incorporated is a contract medical device packaging and sterilization company. The company purchases thermoformed medical packaging trays, which maintain the sterility of medical devices, from various manufacturers. To ensure packaging quality and to prevent cleanroom contamination, Eagle Medical inspects and sterilizes each blister tray that they order. This process is an essential non-value-added activity that creates a bottleneck. Cleanroom employees must stop packaging medical devices and attend to the processing of blister trays and packaging solutions. The blister trays arrive at Eagle’s facility in nested stacks. Vibration and movement during shipping further compresses the stacks, which makes separation …

Kinetic Energy Harvesting Device For Long Distance Thru-Hikers, Jarod Reece Lyles, Ryan William Mclaughlin, Shaw Hawkeye Hughes, David Hernandez

Mechanical Engineering

The intent of this project was to design and build a device capable of harnessing biomechanical energy from a thru-hiker to charge electronic devices. To begin, we ruled out any potential solutions that could be intrusive to the hiking experience, limiting us to a device that could be placed in a backpack.

After defining the scope of the project, we ideated upon potential designs, and chose to move forward with a rotational generator based design. Detailed analysis included both system dynamics and vibrations based models, and from this analysis we developed a mechanical design in SOLIDWORKS®️ and a custom printed …

Surgical Tool Segmentation With Pose-Informed Morphological Polar Transform Of Endoscopic Images, Kevin Huang, Digesh Chitrakar, Wenfan Jiang, Isabella Yung, Yun Hsuan Su

Engineering: Faculty Publications

This paper presents a tool-pose-informed variable center morphological polar transform to enhance segmentation of endoscopic images. The representation, while not loss-less, transforms rigid tool shapes into morphologies consistently more rectangular that may be more amenable to image segmentation networks. The proposed method was evaluated using the U-Net convolutional neural network, and the input images from endoscopy were represented in one of the four different coordinate formats (1) the original rectangular image representation, (2) the morphological polar coordinate transform, (3) the proposed variable center transform about the tool-tip pixel and (4) the proposed variable center transform about the tool vanishing point …

Functional Analysis Of The Cortical Transcriptome And Proteome Reveal Neurogenesis, Inflammation, And Cell Death After Repeated Traumatic Brain Injury In Vivo, Celeste Dunn, Lais A. Ferreira, Sara M. Venier, Syed F. Ali, Jeffery Wolchok, Kartik Balachandran

Biomedical Engineering Faculty Publications and Presentations

The pathological effects of repeated traumatic brain injuries (TBIs) are largely unknown. To gain a detailed understanding of the cortical tissue acute biological response after one or two TBIs, we utilized RNA-sequencing and protein mass spectrometry techniques. Using our previously validated C57Bl/6 weight-drop model, we administered one or two TBIs of a mild or moderate severity. Double injury conditions were spaced 7 days apart, and cortical tissue was isolated 24 h after final injury. Analysis was carried out through functional gene annotation, utilizing Gene Ontology, for both the proteome and transcriptome. Major themes across the four different conditions include: neurogenesis; …

Wave Goodbye To Salt, Andy Wu, Amanda Olla, Solie Grantham, Charlie Sinclair

Mechanical Engineering

Our team of Cal Poly Mechanical Engineers ideated, designed, built, and tested a system to help combat the growing problem of widespread drought in coastal and island communities. We developed a proof-of-concept model of a wave powered, mechanical system to desalinate ocean water using a reverse osmosis process. From topical research, it was found that there are many ways to harness a portion of the huge amount of energy that the ocean provides. While large scale ocean water desalination plants are already in operation, smaller scale desalination units powered by ocean waves are largely underdeveloped. Our relatively small and inexpensive …

Shallow-Water Wind Turbine Foundation, Andrew Walker, Nico Nani, James Cusanelli, Zachary Dunkelberger

Mechanical Engineering

Over the 2021-2022 academic year, we, the Shallow Water Wind Turbine Foundation senior project team, designed, manufactured, and tested a fixed bottom, sand mounted turbine foundation for the Cal Poly Wind Power Club’s Collegiate Wind Competition turbine. The foundation was restricted to certain material, installation, and geometric constraints outlined in this report, and needed to support the turbine under operating conditions including 22 m/s wind speeds. The design was analyzed using primarily a bearing capacity geotechnical analysis to determine final geometry and weight. The foundation was then manufactured using welded, custom carbon steel parts.

The foundation was inspected for geometric …

Novel Neurostimulation-Based Haptic Feedback Platform For Grasp Interactions With Virtual Objects, Aliyah K. Shell, Andres E. Pena, James J. Abbas, Ranu Jung

Biomedical Engineering Faculty Publications and Presentations

Haptic perception is a vital part of the human experience that enriches our engagement with the world, but the ability to provide haptic information in virtual reality (VR) environments is limited. Neurostimulation-based sensory feedback has the potential to enhance the immersive experience within VR environments by supplying relevant and intuitive haptic feedback related to interactions with virtual objects. Such feedback may contribute to an increase in the sense of presence and realism in VR and may contribute to the improvement of virtual reality simulations for future VR applications. This work developed and evaluated xTouch, a neuro-haptic platform that extends the …

Evaluating And Improving Domain-Specific Programming Education: A Case Study With Cal Poly Chemistry Courses, Will Fuchs

Master's Theses

Programming is a key skill in many domains outside computer science. When used judiciously, programming can empower people to accomplish what might be impossible or difficult with traditional methods. Unfortunately, students, especially non-CS majors, frequently have trouble while learning to program. This work reports on the challenges and opportunities faced by Physical Chemistry (PChem) students at Cal Poly, SLO as they learn to program in MATLAB. We assessed the PChem students through a multiple-choice concept inventory, as well as through “think-aloud” interviews. Additionally, we examined the students’ perceptions of and attitudes towards programming. We found that PChem students are adept …

Specialized Named Entity Recognition For Breast Cancer Subtyping, Griffith Scheyer Hawblitzel

Master's Theses

The amount of data and analysis being published and archived in the biomedical research community is more than can feasibly be sifted through manually, which limits the information an individual or small group can synthesize and integrate into their own research. This presents an opportunity for using automated methods, including Natural Language Processing (NLP), to extract important information from text on various topics. Named Entity Recognition (NER), is one way to automate knowledge extraction of raw text. NER is defined as the task of identifying named entities from text using labels such as people, dates, locations, diseases, and proteins. There …

Effects Of Experimental Scale On The Adsorption Of Two Pharmaceutical Drugs Detected In Municipal Wastewater Effluent, Michael Moore

Master's Theses

Pharmaceutical drugs are being produced and consumed in increasing quantities every year and are poorly treated by conventional wastewater treatment processes, leading to increasing detection of such compounds in surface water, groundwater, and municipal drinking water. Soil aquifer treatment (SAT) is a promising method for treating these emerging compounds through combined adsorption and degradation of target compounds in soil. This thesis examines the consistency of results from typical studies like adsorption isotherms and soil columns utilized in analysis of SAT performance, across varying experimental scales. The adsorption behavior of two pharmaceuticals was investigated as a function of experimental scale and …

How Advances In Low-G Plumbing Enable Space Exploration, Mark M. Weislogel, John Graft, Andrew P. Wollman, Karl Cardin, Logan Torres, J. E. Goodman, J. C. Buchli

Mechanical and Materials Engineering Faculty Publications and Presentations

In many ways, plumbing is essential to life support. In fact, the advance of humankind on Earth is directly linked to the advance of clean, healthy, reliable plumbing solutions. Shouldn’t this also be true for the advancement of humankind in space? Unfortunately, the reliability of even the simplest plumbing element aboard spacecraft is rarely that of its terrestrial counterpart. This state of affairs is due entirely to the near-weightless “low-g” state of orbiting and coast spacecraft. But the combined passive capillary effects of surface tension, wetting, and system geometry in space can be exploited to replace the passive role of …

Laser-Scribed Conductive, Photoactive Transition Metal Oxide On Soft Elastomers For Janus On-Skin Electronics And Soft Actuators, Ganggang Zhao, Yun Ling, Yajuan Su, Zanyu Chen, Cherian J. Mathai, Ogheneobarome Emeje, Alexander Brown, Dinesh Reddy Alla, Jie Huang, Chansong Kim, Qian Chen, Xiaoqing He, David Stalla, Yadong Xu

Electrical and Computer Engineering Faculty Research & Creative Works

Laser-assisted fabrication of conductive materials on flexible substrates has attracted intense interests because of its simplicity, easy customization, and broad applications. However, it remains challenging to achieve laser scribing of conductive materials on tissue-like soft elastomers, which can serve as the basis to construct bioelectronics and soft actuators. Here, we report laser scribing of metallic conductive, photoactive transition metal oxide (molybdenum dioxide) on soft elastomers, coated with molybdenum chloride precursors, under ambient conditions. Laser-scribed molybdenum dioxide (LSM) exhibits high electrical conductivity, biocompatibility, chemical stability, and compatibility with magnetic resonance imaging. In addition, LSM can be made on various substrates (polyimide, …

Laser-Scribed Conductive, Photoactive Transition Metal Oxide On Soft Elastomers For Janus On-Skin Electronics And Soft Actuators, Ganggang Zhao, Yun Ling, Yajuan Su, Zanyu Chen, Cherian J. Mathai, Ogheneobarome Emeje, Alexander Brown, Dinesh Reddy Alla, Jie Huang, Chansong Kim, Qian Chen, Xiaoqing He, David Stalla, Yadong Xu

Electrical and Computer Engineering Faculty Research & Creative Works

Laser-assisted fabrication of conductive materials on flexible substrates has attracted intense interests because of its simplicity, easy customization, and broad applications. However, it remains challenging to achieve laser scribing of conductive materials on tissue-like soft elastomers, which can serve as the basis to construct bioelectronics and soft actuators. Here, we report laser scribing of metallic conductive, photoactive transition metal oxide (molybdenum dioxide) on soft elastomers, coated with molybdenum chloride precursors, under ambient conditions. Laser-scribed molybdenum dioxide (LSM) exhibits high electrical conductivity, biocompatibility, chemical stability, and compatibility with magnetic resonance imaging. In addition, LSM can be made on various substrates (polyimide, …

Functional Carbon Nitride Materials In Photo-Fenton-Like Catalysis For Environmental Remediation, Jingkai Lin, Wenjie Tian, Zheyu Guan, Huayang Zhang, Xiaoguang Duan, Hao Wang, Hongqi Sun, Yanfen Fang, Yingping Huang, Shaobin Wang

Research outputs 2022 to 2026

Among various advanced oxidation processes, coupled photocatalysis and heterogeneous Fenton-like catalysis (known as photo-Fenton-like catalysis) to generate highly reactive species for environmental remediation has attracted wide interests. As an emerging metal-free photocatalyst, graphitic carbon nitride (g-C3N4, CN) has been recently recognized as a promising candidate to catalyze robustly heterogeneous photo-Fenton-like reactions for wastewater remediation. This review summarizes recent progress in fabricating various types of CN-based catalysts for the photo-Fenton-like reaction process. Innovative engineering strategies on the CN matrix are outlined, ranging from morphology control, defect engineering, nonmetal atom doping, organic molecule doping to modification by metal-containing species. The photo-Fenton-like catalytic …

Fabrication And Characterization Of Graphene Oxide-Based High-Density Polyethylene / Polypropylene Nanocomposites For Biomedical Applications, Albaina Ali Aldhaheri

Theses

Polymeric nanocomposites have recently become one of the most essential sought-after materials for biomedical applications. Among many others, High-Density Polyethylene (HDPE) is being widely used as a bearing material for the artificial hip and knee joints. However, the weak surface properties of HDPE limit the total artificial hip joints’ survival chances. The addition of polypropylene (PP) improves the surface properties of HDPE composites along with their thermal, chemical, and mechanical properties which are crucial in biomedical applications. Moreover, PP can be easily blended with polyethylene (PE) as it has an almost similar chemical resistance to PE. However, PP is more …

Porcine Liver Injury Model To Assess Tantalum-Containing Bioactive Glass Powders For Hemostasis, Malvika Nagrath, Danielle Bince, Corwyn Rowsell, Deanna Polintan, Joao Rezende-Neto, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

This study evaluates compositions of tantalum-containing mesoporous bioactive glass (Ta-MBG) powders using a porcine fatal liver injury model. The powders based on (80-x)SiO₂-15CaO-5P₂O₅-xTa₂O₅ compositions with x = 0 (0Ta/Ta-free), 1 (1Ta), and 5 (5Ta) mol% were made using a sol–gel process. A class IV hemorrhage condition was simulated on the animals; hemodynamic data and biochemical analysis confirmed the life-threatening condition. Ta-MBGs were able to stop the bleeding within 10 min of their application while the bleeds in the absence of any intervention or in the presence of a commercial agent, AristaTM …

Robust And Accurate Estimation Of Cellular Fraction From Tissue Omics Data Via Ensemble Deconvolution, Manqi Cai, Molin Yue, Tianmeng Chen, Jinling Liu, Erick Forno, Xinghua Lu, Timothy Billiar, Juan Celedón, Chris Mckennan, Wei Chen, Jiebiao Wang

Engineering Management and Systems Engineering Faculty Research & Creative Works

Motivation: Tissue-level omics data such as transcriptomics and epigenomics are an average across diverse cell types. To extract cell-type-specific (CTS) signals, dozens of cellular deconvolution methods have been proposed to infer cell-type fractions from tissue-level data. However, these methods produce vastly different results under various real data settings. Simulation-based benchmarking studies showed no universally best deconvolution approaches. There have been attempts of ensemble methods, but they only aggregate multiple single-cell references or reference-free deconvolution methods. Results: To achieve a robust estimation of cellular fractions, we proposed EnsDeconv (Ensemble Deconvolution), which adopts CTS robust regression to synthesize the results from 11 …

Identification And Characterization Of Point Defects In Nonlinear Optical Crystals: Barium Gallium Selenide And Lithium Triborate, Brian C. Holloway

Theses and Dissertations

Increased interest in developing new nonlinear optical materials has led to 3rd generation materials, such as BaGa4Se₇ and LiB₃O₅. These two nonlinear optical crystals have the potential to enable development of tunable lasers operating across the mid-wave infrared and the ultraviolet regions, respectively. Coherent light sources are used in the development of enhanced technologies with commercial and defense-based applications such as: health and environmental monitoring devices, next-generation infrared countermeasures, and ballistic missile booster exhaust plume characterization. The performance of optical materials in high-powered military applications is largely limited by the presence of defects. These defects …

Multicolor Fluorescence Guided Surgery For Head And Neck Cancer, Dani Szafran-Reeder

University Honors Theses

This project aims to take a novel, NIR nerve-specific fluorophore LGW05-75⁴ and test its compatibility with a tumor-targeting affibody molecule, ABY-029⁶ that has been labeled with IRDye800CW. The overall goal is to show that these two molecules can be co-administered to show the nerves and tumor cells in real-time to better assist surgeons in a full resection while avoiding iatrogenic nerve damage.

Understanding Ch4 Emissions From Compostables: An Exploration Of Local Ch4 Emissions From Landfilled Compostables And The Efficacy Of Emission Mitigation Via Anaerobic Biogas Digestion, Jordan-Yoosuf Aljbour

University Honors Theses

Methane (CH₄) is the second most abundant anthropogenic greenhouse gas within the atmosphere, comprising ~16% of the total anthropogenic greenhouse gas composition on Earth. It has an ~12-year lifetime relative to its eventual oxidation via reaction with tropospheric hydroxyl radicals (OH), and has a 100-year indirect global warming potential (GWP) approximately ranging between 28-36 [Environmental Protection Agency, 2021]. In recent years, the observed average global concentration of atmospheric CH₄ has increased by ~11.0% from 2020 (~15.3 ppb) to 2021 (~17.0 ppb) [Dlugokencky et al., 1994; National Oceanic and Atmospheric Administration, 2022]. With …

Optimizing Speed Profiles For Sustainable Train Operation With Wayside Energy Storage Systems, Leon A. Allen

Dissertations

Large hauling capability and low rolling resistance has put rail transit at the forefront of mass transportation mode sustainability in terms of congestion mitigation and energy conservation. As such, rail vehicles are one of the least energy-intensive modes of transportation and least environmentally polluting. Despite, these positives, improper driving habits and wastage of the braking energy through dissipation in braking resistors result in unnecessary consumption, extra costs to the operator and increased atmospheric greenhouse gas emissions.

This study presents an intelligent method for the optimization of the number and locations of wayside energy storage system (WESS) units that maximize the …

Nondestructive Evaluation Of 3d Printed, Extruded, And Natural Polymer Structures Using Terahertz Spectroscopy And Imaging, Alexander T. Clark

Dissertations

Terahertz (THz) spectroscopy and imaging are considered for the nondestructive evaluation (NDE) of various three-dimensional (3D) printed, extruded, and natural polymer structures. THz radiation is the prime candidate for many NDE challenges due to the added benefits of safety, increased contrast and depth resolution, and optical characteristic visualization when compared to other techniques. THz imaging, using a wide bandwidth pulse-based system, can evaluate the external and internal structure of most nonconductive and nonpolar materials without any permanent effects. NDE images can be created based on THz pulse attributes or a material’s spectroscopic characteristics such as refractive index, attenuation coefficient, or …

Local Learning Algorithms For Stochastic Spiking Neural Networks, Bleema Rosenfeld

Dissertations

This dissertation focuses on the development of machine learning algorithms for spiking neural networks, with an emphasis on local three-factor learning rules that are in keeping with the constraints imposed by current neuromorphic hardware. Spiking neural networks (SNNs) are an alternative to artificial neural networks (ANNs) that follow a similar graphical structure but use a processing paradigm more closely modeled after the biological brain in an effort to harness its low power processing capability. SNNs use an event based processing scheme which leads to significant power savings when implemented in dedicated neuromorphic hardware such as Intel’s Loihi chip.

This work …

Understanding The Interfacial Processes Of Reactive Nanobubbles Toward Agricultural Applications, Xiaonan Shi

Dissertations

There is a growing interest in nanobubble (NB) technology because of its diverse applications (e.g., detergent-free cleaning, water aeration, ultra-sound imaging and intracellular drug delivery, and mineral processing). NBs have a higher efficiency of mass transfer compared to bulk scale bubbles due to the high specific surface areas. The high specific surface also facilitates physical adsorption and chemical reactions in the gas liquid interface. Furthermore, the collapse of NBs creates shock waves and the formation of hydroxyl radicals (OH).

However, it remains elusive why or how NBs are stabilized in water and particularly, the states of internal pressures of NBs …