Digital Commons Network^™

An Evolved Adeno-Associated Viral Variant Enhances Gene Delivery And Gene Targeting In Neural Stem Cells, Jae-Hyung Jang, James Koerber, Jung-Suk Kim, Prashanth Asuri, Tandis Vazin, Melissa Bartel, Albert Keung, Inchan Kwan, David Schaffer

Bioengineering

Gene delivery to, and gene targeting in, stem cells would be a highly enabling technology for basic science and biomedical application. Adeno-associated viral (AAV) vectors have demonstrated the capacity for efficient delivery to numerous cells, but their application to stem cells has been limited by low transduction efficiency. Due to their considerable advantages, however, engineering AAV delivery systems to enhance gene delivery to stem cells may have an impact in stem cell biology and therapy. Therefore, using several diverse AAV capsid libraries—including randomly mutagenized, DNA shuffled, and random peptide insertion variants—we applied directed evolution to create a “designer” AAV vector …

Developing Anaerobic Digestion Cooperatives In Ireland, Aoife Ní Ruanaigh, John Mcgrory

Dissertations

Anaerobic Digestion (AD) is a natural process of decomposition and decay that takes place in the absence of oxygen and by which organic matter is broken down to its simpler chemical components. AD plants could help Ireland meet its requirements under a number of EU Directives as landfills release far more greenhouse gas emissions than other forms of waste treatment. It is estimated that 37 million tonnes per year of animal manure are stored on farms before disposal. There are also 676,000 tonnes of municipal food and garden waste produced annually. This waste could be used in AD plants to …

High Power, Low Frequency Ultrasound: Meniscal Tissue Interaction And Ablation Characteristics, Brendan O'Daly, Edmund Morris, Graham Gavin, Conor Keane, John O Byrne, Garrett Mcguinness

Articles

Abstract—This study evaluates high power low frequency ultrasound transmitted via a flat vibrating probe tip as an alternative technology for meniscal debridement in the bovine knee. An experimental force controlled testing rig was constructed using a 20 kHz ultrasonic probe suspended vertically from a load cell. Effect of variation in amplitude of distal tip displacement (242–494 mm peak-peak) settings and force (2.5–4.5 N) on tissue removal rate (TRR) and penetration rate (PR) for 52 bovine meniscus samples was analyzed. Temperature elevation in residual meniscus was measured by embedded thermocouples and histologic analysis. As amplitude or force increases, there is a …

Anti-Neuroblastoma Activity Of Gold Nanorods Bound With Gd2 Monoclonal Antibody Under Near-Infrared Laser Irradiation, Ching-An Peng, Chung-Hao Wang

Michigan Tech Publications, Part 1

High-risk neuroblastoma is one of the most common deaths in pediatric oncology. Current treatment of this disease involves a coordinated sequence of chemotherapy, surgery, and radiation. Further advances in therapy will require the targeting of tumor cells in a more selective and efficient way so that survival can be improved without substantially increasing toxicity. To achieve tumor-selective delivery, disialoganglioside (GD2) expressed by almost all neuroblastoma tumors represents a potential molecular target that can be exploited for tumor-selective delivery. In this study, GD2 monoclonal antibody (anti-GD2) was conjugated to gold nanorods (GNRs) which are one of anisotropic nanomaterials that can absorb …

Robust Region Tracking In Multi-Agent Systems Utilizing Sliding Mode Control: Theory And Applications, Mark Bacon

Master's Theses

This thesis presents a methodology to bring controlled agents within a moving region despite agent interaction dynamics, uncertain forces and parameter variation. The logic is derived from traditional Sliding Mode Control theory with an expanded boundary layer which allows position deviation from the region center to specified bounds. As an example of the utility of this control, multiple methods of herding (controlling passive agents by appropriate positioning of controlled agents) are presented.

2011-2012 Che Newsletter, Department Of Chemical Engineering, Michigan Technological University

Department of Chemical Engineering Newsletters

Table of Contents

• Department
• Bioengineering Research
• Student News
• Alumni and Friends

Engineering Research 2011, College Of Engineering, Michigan Technological University

Michigan Tech Engineering Magazine

Table of Contents

• Air & Water
• Energy
• Engineered Materials
• Health
• Sensing & Controls
• People
• Research Centers & Institutes

Undergraduate Education 2011, College Of Engineering, Michigan Technological University

Michigan Tech Engineering Magazine

Table of Contents

• Design
• International
• Research
• Programs

The Hemocompatibility Of A Nitric Oxide Generating Polymer That Catalyzes S-Nitrosothiol Decomposition In An Extracorporeal Circulation Model, Terry C. Major, David O. Brant, Charles P. Burney, Kagya Amoako, Gail M. Annich, Mark E. Meyerhoff, Hitesh Handa, Robert E. Bartlett

Mechanical and Industrial Engineering Faculty Publications

Nitric oxide (NO) generating (NOGen) materials have been shown previously to create localized increases in NO concentration by the catalytic decomposition of blood S-nitrosothiols (RSNO) via copper (Cu)-containing polymer coatings and may improve extracorporeal circulation (ECC) hemocompatibility. In this work, a NOGen polymeric coating composed of a Cuo-nanoparticle (80 nm)-containing hydrophilic polyurethane (SP-60D-60) combined with the intravenous infusion of an RSNO, S- nitroso-N-acetylpenicillamine (SNAP), is evaluated in a 4 h rabbit thrombogenicity model and the anti-thrombotic mechanism is investigated. Polymer films containing 10 wt.% Cuo-nanoparticles coated on the inner walls of ECC circuits are employed concomitantly with systemic SNAP administration …

Conference Program, Ted Knowlton

10th International Conference on Circulating Fluidized Beds and Fluidization Technology - CFB-10

No abstract provided.

Reflections On Mathematical Models And Simulation Of Gas-Particle Flows, Sankaran Sundaresan

10th International Conference on Circulating Fluidized Beds and Fluidization Technology - CFB-10

No abstract provided.

Latest Developments On Application Of Heterogenous Basic Catalysts For An Efficient And Eco Friendly Synthesis Of Biodiesel: A Review, Yogesh C. Sharma, Bhaskar Singh, John Korstad

College of Science and Engineering Faculty Research and Scholarship

Heterogeneous catalysts are now being tried extensively for biodiesel synthesis. These catalysts are poised to play an important role and are perspective catalysts in future for biodiesel production at industrial level. The review deals with a comprehensive list of these heterogeneous catalysts which has been reported recently. The mechanisms of these catalysts in the transesterification reaction have been discussed. The conditions for the reaction and optimized parameters along with preparation of the catalyst, and their leaching aspects are discussed. The heterogeneous basic catalyst discussed in the review includes oxides of magnesium and calcium; hydrotalcite/layered double hydroxide; alumina; and zeolites. Yield …

Differing Lectin Binding Profiles Among Human Embryonic Stem Cells And Derivatives Aid In The Isolation Of Neural Progenitor Cells, Mahesh C. Dodla, Amber Young, Alison Venable, Kowser Hasneen, Raj R. Rao, David W. Machacek, Steven L. Stice

Chemical and Life Science Engineering Publications

Human embryonic stem cells (hESCs) and their differentiated progeny allow for investigation of important changes/events during normal embryonic development. Currently most of the research is focused on proteinacous changes occurring as a result of differentiation of stem cells and little is known about changes in cell surface glycosylation patterns. Identification of cell lineage specific glycans can help in understanding their role in maintenance, proliferation and differentiation. Furthermore, these glycans can serve as markers for isolation of homogenous populations of cells. Using a panel of eight biotinylated lectins, the glycan expression of hESCs, hESCs-derived human neural progenitors (hNP) cells, and hESCs-derived …

Langevin Dynamics For The Transport Of Flexible Biological Macromolecules In Confined Geometries, Michael H. Peters

Chemical and Life Science Engineering Publications

The transport of flexible biological macromolecules in confined geometries is found in a variety of important biophysical systems including biomolecular movements through pores in cell walls, vesicle walls, and synthetic nanopores for sequencing methods. In this study, we extend our previous analysis of the Fokker–Planck and Langevin dynamics for describing the coupled translational and rotational motions of single structuredmacromolecules near structured external surfaces or walls [M. H. Peters, J. Chem. Phys. 110, 528 (1999); 112, 5488 (2000)] to the problem of many interacting macromolecules in the presence of structured external surfaces representing the confining geometry. Overall macromolecular flexibility …

Meeting Reports: Research On Coupled Human And Natural Systems (Chans): Approach, Challenges, And Strategies, Marina Alberti, Heidi Asbjornsen, Lawrence A. Baker, Nicholas Brozovic, Laurie E. Drinkwater, Scott A. Drzyzga, Claire A. Jantz, José Fragoso, Daniel S. Holland, Timothy A. Kohler, Jianguo Liu, William J. Mcconnell, Herbert D.G. Maschner, James D.A. Millington, Michael Monticino, Guillermo Podestá, Robert Gilmore Pontius, Charles L. Redman, Nicholas J. Reo, David Sailor, Gerald Urquhart

Daugherty Water for Food Global Institute: Faculty Publications

Understanding the complexity of human–nature interactions is central to the quest for both human well-being and global sustainability. To build an understanding of these interactions, scientists, planners, resource managers, policymakers, and communities increasingly are collaborating across wide-ranging disciplines and knowledge domains. Scientists and others are generating new integrated knowledge on top of their requisite specialized knowledge to understand complex systems in order to solve pressing environmental and social problems (e.g., Carpenter et al. 2009). One approach to this sort of integration, bringing together detailed knowledge of various disciplines (e.g., social, economic, biological, and geophysical), has become known as the study …

Wireless Signals And Male Fertility, Rand Mouradi

ETD Archive

Rapid advances in wireless technology have increased the number of users of mobile devices. As of 2011, the number of cell phone subscribers have reached 5.3 billion worldwide. Mobile devices have saturated our environment with radio frequency (RF) signals. This situation has created public concern over the effect of such signals on human health. This dissertation focuses on the correlation of RF signals emitted by cell phones with male infertility. A thorough discussion is provided on the effects of RF signals on the development of central nervous system (CNS) neoplasm, the design of these mobile devices, the range of the …

One-Dimensional Radial Diffusion Of Small Molecules (376 Da) In Bone Tissue, Kurt W. Farrell

ETD Archive

The flow of nutrients through any biological tissue is important to maintain homeostasis. If the transport process is understood, medical research teams can better design medications, prosthetic implants, and tissue scaffolds. Additionally, transport rates help physicians to better understand disease states and wound healing, including minor injuries such as breaks and sprains, which will aid in better diagnoses. We developed a novel method that measures the rate of diffusion in vitro, of fluorescein sodium salt. Samples were incubated at 37°C in a 5 CO2 atmosphere for various periods of time. Samples were sliced and analyzed using Image-Pro Plus and MATLAB …

Modification, Expression, And Purification Of Hyperactive Antifreeze Proteins From Insect Tenebrio Molitor, Sen Bu

ETD Archive

Antifreeze proteins (AFPs), also known as thermal hysteresis proteins, can protect organisms from damage caused by freezing by lowering the freezing point of fluids. AFPs can bind to small ice crystals, inhibit ice growth, and change the morphology of ice crystals. The difference between the freezing temperature and the melting temperature is termed thermal hysteresis (TH). There are different types of AFPs, such as fish AFPs (type I, II, III, and IV) and insect AFPs. These AFPs can also be classified by their thermal hysteresis activity: moderately active AFPs and hyperactive AFPs. Previous research groups successfully constructed AFP (type I, …

Characterization Of Elastin-Like Polypeptides Using Viscometry, Hamdan Noman Alanazi

ETD Archive

Elastin-like polypeptides (ELPs) are a class of polypeptide polymers that are gaining interest in various potential applications. These polymers are responsive to the changes in their environment by exhibiting conformational changes and aggregation. Monodisperse elastin-like polypeptides, (GVGVP)40, (GVGVP)40-foldon, and (GVGVP)60-foldon are made in bacterial expression system. An Ubbelohde capillary viscometer was set up to characterize the structural changes of these ELPs in phosphate buffered saline (PBS) solution. For the ELP-foldon, the relative viscosity measurements were utilized to calculate the intrinsic viscosities using Kraemer and Huggins equations. The known molecular weights of the ELPs and the experimentally determined intrinsic viscosities facilitated …

First-Passage Time Analysis Of A One-Dimensional Diffusion-Reaction Model: Application To Protein Transport Along Dna, Michael L. Mayo, Edward J. Perkins, Preetam Ghosh

Computer Science Publications

Background

Proteins search along the DNA for targets, such as transcription initiation sequences, according to one-dimensional diffusion, which is interrupted by micro- and macro-hopping events and intersegmental transfers that occur under close packing conditions.

Results

A one-dimensional diffusion-reaction model in the form of difference-differential equations is proposed to analyze the nonequilibrium protein sliding kinetics along a segment of bacterial DNA. A renormalization approach is used to derive an expression for the mean first-passage time to arrive at sites downstream of the origin from the occupation probabilities given by the individual transport equations. Monte Carlo simulations are employed to assess the …

A Modified Stokes-Einstein Equation For Aβ Aggregation, Srisairam Achuthan, Bon Jae Chung, Preetam Ghosh, Vijayaraghavan Rangachari, Ashwin Vaidya

Computer Science Publications

Background

In all amyloid diseases, protein aggregates have been implicated fully or partly, in the etiology of the disease. Due to their significance in human pathologies, there have been unprecedented efforts towards physiochemical understanding of aggregation and amyloid formation over the last two decades. An important relation from which hydrodynamic radii of the aggregate is routinely measured is the classic Stokes-Einstein equation. Here, we report a modification in the classical Stokes-Einstein equation using a mixture theory approach, in order to accommodate the changes in viscosity of the solvent due to the changes in solute size and shape, to implement a …

Conditional Posterior Cramer-Rao Lower Bound And Distributed Target Tracking In Sensor Networks, Long Zuo

Electrical Engineering and Computer Science - Dissertations

Sequential Bayesian estimation is the process of recursively estimating the state of a dynamical system observed in the presence of noise. Posterior Cramer-Rao lower bound (PCRLB) sets a performance limit onany Bayesian estimator for the given dynamical system. The PCRLBdoes not fully utilize the existing measurement information to give anindication of the mean squared error (MSE) of the estimator in the future. In many practical applications, we are more concerned with the value of the bound in the future than in the past. PCRLB is an offline bound, because it averages out the very useful measurement information, which makes it …

The Influence Of Interleukin-4 On Ligament Healing, Connie S. Chamberlain, Ellen M. Leiferman, Kayt E. Frisch, Sijian Wang, Xipei Yang, Stacey L. Brickson, Ray Vanderby

Faculty Publications - Biomedical, Mechanical, and Civil Engineering

Despite a complex cascade of cellular events to reconstruct the damaged extracellular matrix, ligament healing results in a mechanically inferior scarred ligament. During normal healing, granulation tissue expands into any residual normal ligamentous tissue (creeping substitution), resulting in a larger region of healing, greater mechanical compromise and an inefficient repair process. To control creeping substitution and possibly enhance the repair process, the antiinflammatory cytokine, interleukin-4 (IL-4), was administered to rats before and after rupture of their medial collateral ligaments. In vitro experiments showed a time-dependent effect on fibroblast proliferation after IL-4 treatment. In vivo treatments with IL-4 (100 ng/mL IV) …

Ultrasound Echo Is Related To Stress And Strain In Tendon, Sarah Duenwald, Hirohito Kobayashi, Kayt E. Frisch, Roderic Lakes, Ray Vanderby Jr.

Faculty Publications - Biomedical, Mechanical, and Civil Engineering

The mechanical behavior of tendons has been well studied in vitro. A noninvasive method to acquire mechanical data would be highly beneficial. Elastography has been a promising method of gathering in vivo tissue mechanical behavior, but it has inherent limitations. This study presents acoustoelasticity as an alternative ultrasound-based method of measuring tendon stress and strain by reporting a relationship between ultrasonic echo intensity (B-mode ultrasound image brightness) and mechanical behavior of tendon in vitro. Porcine digital flexor tendons were cyclically loaded in a mechanical testing system while an ultrasonic echo response was recorded. We report that echo intensity …

Eating Rate During A Fixed-Portion Meal Does Not Affect Postprandial Appetite And Gut Peptides Or Energy Intake During A Subsequent Meal, J. Phillip Karl, Andrew J. Young, Scott J. Montain

United States Army: Publications

Eating rate has recently been shown to influence energy intake and appetite during an ad libitummeal, and alter postprandial secretion of glucagon-like peptide-1 (GLP-1) and peptide-YY (PYY) following a fixed-portionmeal. Whether these effects influence satiety, as measured by energy intake at the subsequent meal, is unclear. We manipulated eating rate during a fixed-portion meal in order to examine how eating behavior and associated periprandial and postprandial responses of putative endocrine mediators of appetite would affect energy intake at the following meal in fifteen non-obese (BMI ≥ 25 kg/m²) and ten obese (BMI ≥ 30 kg/m²) healthy adult men and …

Recombinant Paraoxonase 1 Protects Against Sarin And Soman Toxicity Following Microinstillation Inhalation Exposure In Guinea Pigs, Manojkumar Valiyaveettil, Yonas Alamneh, Peter Rezk, Michael W. Perkins, Alfred M. Sciuto, Bhupendra P. Doctor, Madhusoodana P. Nambiar

United States Army: Publications

To explore the efficacy of paraoxonase 1 (PON1) as a catalytic bioscavenger, we evaluated human recombinant PON1 (rePON1) expressed in Trichoplusia ni larvae against sarin and soman toxicity using microinstillation inhalation exposure in guinea pigs. Animals were pretreated intravenously with catalytically active rePON1, followed by exposure to 1.2 X LCt₅₀ sarin or soman. Administration of 5 units of rePON1 showed mild increase in the blood activity of the enzyme after 30 min, but protected the animals with a significant increase in survival rate along with minimal signs of nerve agent toxicity. Recombinant PON1 pretreated animals exposed to sarin or …

The Utility Of Shewanella Japonica For Microbial Fuel Cells, Justin C. Biffinger, Lisa A. Fitzgerald, Ricky Ray, Brenda J. Little, Stephen E. Lizewski, Emily R. Petersen, Bradley R. Ringeisen, Wesley C. Sanders, Paul E. Sheehan, Jeremy J. Pietron, Jeffrey W. Baldwin, Lloyd J. Nadeau, Glenn R. Johnson, Meghann Ribbens, Steven E. Finkel, Kenneth H. Nealson

United States Navy: Publications

Shewanella-containing microbial fuel cells (MFCs) typically use the fresh water wild-type strain Shewanella oneidensis MR-1 due to its metabolic diversity and facultative oxidant tolerance. However, S. oneidensis MR-1 is not capable of metabolizing polysaccharides for extracellular electron transfer. The applicability of Shewanella japonica (an agar-lytic Shewanella strain) for power applications was analyzed using a diverse array of carbon sources for current generation from MFCs, cellular physiological responses at an electrode surface, biofilm formation, and the presence of soluble extracellular mediators for electron transfer to carbon electrodes. Critically, air-exposed S. japonica utilizes biosynthesized extracellular mediators for electron transfer to carbon …

Sex Steroid And Thyroid Hormone Receptor Expressions In The Thyroid Of The American Alligator (Alligator Mississippiensis) During Different Life Stages, Dieldrich S. Bermudez, Jeremy P. Skotko, Yasuhiko Ohta, Ashley S.P. Boggs, Taisen Iguchi, Louis J. Guillette Jr.

United States Environmental Protection Agency: Publications

The expression of estrogen receptors, ESR1 (ERα) and ESR2 (ERβ), and androgen receptors (AR) in the thyroid gland has been reported in few vertebrate species other than a few mammals. This study reports the presence of sex steroid hormone receptors and thyroid receptors (ERα, ERβ, AR, TRα, and TRβ) in the thyroid gland of the American alligator at several life stages. It provides a semiquantification and distribution of ERα in the thyroid follicle cells using an immunohistochemical approach as well as reports quantitative differences in mRNA expression of ERα, ERβ, TRα, TRβ, and AR in the same tissue using quantitative …

Time-Lapse Three-Dimensional Inversion Of Complex Conductivity Data Using An Active Time Constrained (Atc) Approach, M. Karaoulis, A. Revil, D. D. Werkema, B. J. Minsley, W. F. Woodruff, A. Kemna

United States Environmental Protection Agency: Publications

Induced polarization (more precisely the magnitude and phase of impedance of the subsurface) is measured using a network of electrodes located at the ground surface or in boreholes. This method yields important information related to the distribution of permeability and contaminants in the shallow subsurface. We propose a new time-lapse 3-D modelling and inversion algorithm to image the evolution of complex conductivity over time.We discretize the subsurface using hexahedron cells. Each cell is assigned a complex resistivity or conductivity value. Using the finite-element approach, we model the in-phase and out-of-phase (quadrature) electrical potentials on the 3-D grid, which are then …

Me-Em 2011 Annual Report, Department Of Mechanical Engineering-Engineering Mechanics, Michigan Technological University

Department of Mechanical and Aerospace Engineering Annual Reports

Table of Contents

• ME-EM: 85 Years of Excellence
• Faculty & Staff
• Enrollment & Degrees
• Alumni
• Resources
• Graduates