Digital Commons Network^™

A Multi Agent System For Flow-Based Intrusion Detection Using Reputation And Evolutionary Computation, David Hancock

Theses and Dissertations

The rising sophistication of cyber threats as well as the improvement of physical computer network properties present increasing challenges to contemporary Intrusion Detection (ID) techniques. To respond to these challenges, a multi agent system (MAS) coupled with flow-based ID techniques may effectively complement traditional ID systems. This paper develops: 1) a scalable software architecture for a new, self-organized, multi agent, flow-based ID system; and 2) a network simulation environment suitable for evaluating implementations of this MAS architecture and for other research purposes. Self-organization is achieved via 1) a reputation system that influences agent mobility in the search for effective vantage …

Multiple Integrated Navigation Sensors For Improving Occupancy Grid Fastslam, Christopher P. Weyers

Theses and Dissertations

An autonomous vehicle must accurately observe its location within the environment to interact with objects and accomplish its mission. When its environment is unknown, the vehicle must construct a map detailing its surroundings while using it to maintain an accurate location. Such a vehicle is faced with the circularly defined Simultaneous Localization and Mapping (SLAM) problem. However difficult, SLAM is a critical component of autonomous vehicle exploration with applications to search and rescue. To current knowledge, this research presents the first SLAM solution to integrate stereo cameras, inertial measurements, and vehicle odometry into a Multiple Integrated Navigation Sensor (MINS) path. …

An Analytical Model Of Nanometer Scale Viscoelastic Properties Of Polymer Surfaces Measured Using An Atomic Force Microscope, Jacob B. Goldberg

Theses and Dissertations

The United States Air Force and the Department of Defense is increasingly interested in nanomaterials. To study these materials, one needs to measure the mechanics of materials on the nanoscale. Over the past few decades the atomic force microscope (AFM) has been used in various methods to establish local surface properties at the nanoscale. In particular, surface elasticity measurements are crucial to understanding nanoscale surface properties. Problems arise, however, when measuring soft surfaces such as polymers and biological specimens, because these materials have a more complex viscoelastic response. This research focuses on modeling an AFM dynamic nanoindentation experiment intended to …

Migration Issues In The Democratic Republic Of Congo, Michael J. Thompson

Theses and Dissertations

Since the end of the Cold War, the number of weak and failing states has increased significantly. The United States (US) military has been deployed in multiple nation states in an effort to prevent these weak states from collapsing into chaos. This thesis explores one of the driving factors of state collapse, net migration, to gauge how US foreign policy might be employed to reduce the flow of people out of a country. To demonstrate the foreign policies and their effects, a pilot model was constructed using a system dynamics methodology. The Democratic Republic of Congo (DRC) was selected as …

Modeling Enhanced Storage Of Groundwater Contaminants Due To The Presence Of Cracks In Low Permeability Zones Underlying Contaminant Source Areas, Jeremy M. Miniter

Theses and Dissertations

Throughout DoD, chlorinated aliphatic hydrocarbons (CAHs), a type of Dense Non-Aqueous Phase Liquid (DNAPL), have been frequently used. In the subsurface, spilled DNAPLs may pool atop low permeability clay layers. In this study a numerical model is constructed using the Groundwater Modeling System to assess how cracks in the clay, either pre-existing or the result of DNAPL-clay interactions, might impact a dissolved CAH plume generated by the DNAPL source. The conceptual model posits a DNAPL source in a high permeability sand aquifer sitting atop a low permeability clay layer. The model assumes dissolved CAH generated by the DNAPL is transported …

Composite Aircraft Life Cycle Cost Estimating Model, Daniel B. Lambert

Theses and Dissertations

Composite materials are beginning to comprise a greater percentage of structural materials used throughout aircraft production. The increased usage of composites has led individuals within the Air Force community to revisit aircraft life cycle cost, LCC, models. A series of affordability initiatives has culminated in significant evidence over the last decade to better quantify the impact of primarily composite structures in aircraft. The Advanced Composite Cargo Aircraft, ACCA, a research effort sponsored by the Air Force Research Lab, attempted to determine the impact of part size and large scale composite components on LCC for cargo aircraft. This research evaluates the …

Genomic Library Screens For Genes Involved In N-Butanol Tolerance In Escherichia Coli, Luis Reyes, Maria Almario, Katy Kao

Faculty Publications

Backgroundn-Butanol is a promising emerging biofuel, and recent metabolic engineering efforts have demonstrated the use of several microbial hosts for its production. However, most organisms have very low tolerance to n-butanol (up to 2% (v/v)), limiting the economic viability of this biofuel. The rational engineering of more robust n-butanol production hosts relies upon understanding the mechanisms involved in tolerance. However, the existing knowledge of genes involved in n-butanol tolerance is limited. The goal of this study is therefore to identify E. coli genes that are involved in n-butanol tolerance.Methodology/Principal FindingsUsing a genomic library enrichment strategy, we identified approximately 270 genes …

Department Of Biological Systems Engineering Newsletter, Volume 7, Number 1, March 2011

BSE Department Magazine

No abstract provided.

Pipeline Design For Reclaimed Spill Water For West Stanislaus Irrigation District, Daniel Bays

BioResource and Agricultural Engineering

The goal of this project was to design a pipeline that could be installed to replace an existing drain in West Stanislaus Irrigation District.  The pipeline would give the district the ability to divert drain water back into their delivery system or send water down the existing drain.

The design attempted to use pipe and material the district already has and provided construction drawings and installation instructions for the construction of this design in the future.

Economic Analysis Of Reverse Osmosis Desalination Of Water For Agricultural Irrigation Applications, Ashley Hemping

BioResource and Agricultural Engineering

The combination of an ever-increasing population and a diminishing usable water supply threatens the sustainability of humanity’s existence on a global scale, especially in California, where agriculture is so integral to the state’s economy.  Due to widespread recognition of this problem, there has been a growing trend in the development of alternative water resources, one of which involves the desalination of salt or brackish waters.  Several different desalination technologies exist, including microfiltration, multi-stage flash, and multi-effect distillation.

This senior project investigates the economic viability of implementing reverse osmosis desalination for treatment of agricultural wastewater or other unusable water sources.  These …

Fuel Cycle Co2-E Targets Of Renewable Hydrogen As A Realistic Transportation Fuel In Australia, Alberto Boretti

Mechanical and Aerospace Engineering Faculty Research & Creative Works

The claim of catastrophic manmade climate change or global warming through anthropogenic CO₂ has presently focused the interest on the tailpipe emissions of CO₂ per km, with recent legislations obsessively targeting these emissions of CO₂ with defectively implemented procedures. with a variety of different propulsion solutions (electric, hybrid electric, hybrid mechanic, conventional) and different fuels (Diesel, Petrol, alternative fossil, alternative renewable) available in the near future, a more comprehensive approach based on the full fuel cycle, and eventually also the full life cycle of the vehicle appear to be necessary. the paper is a contribution to trigger …

Computational Intelligence In Wireless Sensor Networks: A Survey, Raghavendra V. Kulkarni, Anna Förster, Ganesh K. Venayagamoorthy

Electrical and Computer Engineering Faculty Research & Creative Works

Wireless sensor networks (WSNs) are networks of distributed autonomous devices that can sense or monitor physical or environmental conditions cooperatively. WSNs face many challenges, mainly caused by communication failures, storage and computational constraints and limited power supply. Paradigms of computational intelligence (CI) have been successfully used in recent years to address various challenges such as data aggregation and fusion, energy aware routing, task scheduling, security, optimal deployment and localization. CI provides adaptive mechanisms that exhibit intelligent behavior in complex and dynamic environments like WSNs. CI brings about flexibility, autonomous behavior, and robustness against topology changes, communication failures and scenario changes. …

Water And Air Quality Performance Of A Reciprocating Biofilter Treating Dairy Wastewater, Seppi Matthew Henneman

Master's Theses

ABSTRACT

Water and Air Quality Performance of a Reciprocating

Biofilter Treating Dairy Wastewater

Seppi Matthew Henneman

Agricultural non-point source pollution is the leading water quality problem in surface water and the second leading problem in ground water in the US.  Among the contaminants, nutrients (such as nitrogen, phosphorus, potassium) can be transported from agricultural fields when cropland is not managed properly.  In California, dairy manure application to cropland has become tightly regulated with the goal of decreasing such nutrient pollution.  Dairies unable to balance their manure nutrient supply with cropland application area may benefit from a nitrogen removal technology.  One …

A Peridynamic Formulation For Transient Heat Conduction In Bodies With Evolving Discontinuities, Monchai Duangpanya

Department of Engineering Mechanics: Dissertations, Theses, and Student Research

Modeling heat flow in bodies with discontinuities, such as cracks, or with inclusions that have different thermal properties has been a very challenging problem. Classical models lead to infinite heat fluxes at the tip of a crack and convergence of numerical methods that approximate solutions to such models have convergence and mesh dependency issues. To remove the difficulties faced by the classical models a novel nonlocal theory is formulated.
The new theory starts from the conservation of energy principle and uses the idea of nonlocal heat-transfer between material points. This idea leads to a transient heat transfer model that does …

A Study Of Osteocyte Apoptosis By Region And Quadrant In Murine Cortical Bone, Jessica Kristen Chan

Master's Theses

ABSTRACT

A Study of Osteocyte Apoptosis by Region and Quadrant in Murine Cortical Bone

Jessica Kristen Chan

Osteocytes undergo apoptosis to spatially and temporally initiate bone remodeling.  This study investigates the distribution of apoptotic osteocytes within different quadrants and regions of cortical bone and compares the frequency of osteocyte apoptosis to regional factors associated with bone remodeling.  Specifically, the quantity of apoptosis was compared to levels of the bone morphagenic protein antagonists noggin and gremlin.  Samples of unloaded right tibial bone obtained from C57/Bl/6 mice underwent TUNEL staining for apoptotic osteocytes and were counterstained with methyl green to detect osteocyte …

Analysis Of Interband, Intraband, And Plasmon Polariton Transitions In Silver Nanoparticle Films Via In Situ Real-Time Spectroscopic Ellipsometry, S. A. Little, R. W. Collins, S. Marsillac

Electrical & Computer Engineering Faculty Publications

The dielectric function of Ag nanoparticle films, deduced from an analysis of in situ real-time spectroscopic ellipsometry (RTSE) measurements, is found to evolve with time during deposition in close consistency with the film structure, deduced in the same RTSE analysis. In the nucleation regime, the intraband dielectric function component is absent and plasmon polariton behavior dominates. Only at nuclei contact, does the intraband amplitude appear, increasing above zero. Both intraband and plasmon amplitudes coexist during surface smoothening associated with coalescence. The intraband relaxation time increases rapidly after surface smoothening is complete, also in consistency with the thin film structural evolution.

Runoff, Erosion, And Size Distribution Of Sediment From Beef Cattle Feedlots, John E. Gilley, Jason R. Vogel, Roger Eigenberg, David B. Marx, Brian L. Woodbury

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The size distribution of sediment in runoff from feedlot surfaces influences erosion rates and settling velocity. The objectives of this study were to: (1) measure runoff, erosion, and size distribution of sediment in runoff from feedlot surfaces containing varying amounts of unconsolidated surface material (USM), and (2) determine the effects of varying runoff rate on erosion and sediment size distribution. Simulated rainfall was applied to 0.75 m wide by 2 m long plots located within feedlot pens. Sieve and pipette analyses were used to measure the diameters of the eroded materials. No significant differences in runoff and erosion were found …

Hardy Diagnostics Facility Redesign, Jamie W. Lam

Industrial and Manufacturing Engineering

This senior project is a facilities design for the plate production room at Hardy Diagnostics. This project was completed using a systematic layout planning approach. The main reason for this redesign was to consolidate all plate line production into one room. This would ensure better visability for the managers. After the project was defined, the different departments were established and the relationships between those departments were found. The space requirements needed for those departments were then measured out to also include the aisle widths and any machinery or carts needed to complete each function. Having determined all requirements for this …

Predicting Articular Cartilage Constituent Material Properties Following In Vitro Growth Using A Proteoglycan-Collagen Mixture Model, Michael Stender

Master's Theses

      A polyconvex continuum-level  proteoglycan Cauchy stress function was developed based on the continuum electromechanical Poisson-Boltzmann unit cell model for proteoglycan interactions. The resulting proteoglycan model was combined with a novel collagen fibril model and a ground substance matrix material to create a polyconvex constitutive finite element model of articular cartilage. The true collagen fibril modulus , and the ground substance matrix shear modulus , were varied to obtain the best fit to experimental tension, confined compression, and unconfined compression data for native explants and explants cultured in insulin-like growth factor-1 (IGF-1) and transforming growth factor-β1 (TGF-β1).  Results indicate …

Artificial Neural Networking As A Decision Tool For Natural Gas Investment, Micah D. Denecour

Master's Theses

With the growing interest in the Marcellus Shale and its natural gas deposits, there are opportunities to purchase and hold land for investment purposes. A robust decision tool is needed to help guide investors towards the most profitable properties. Artificial neural networks have many unique benefits that make them an ideal candidate for this purpose.

The artificial neural networks created in this study had nine independent variables. Combinations of these nine variables were created to describe 300 theoretical properties available for purchase. Each of these properties were then evaluated by an expert in the field and given a score from …

Development Of High-Resolution Underwater Mapping Techniques, Christopher N. Roman, Gabrielle Inglis, J. Ian Vaughn, Stefan Williams, Oscar Pizarro, Ariell Friedman, Daniel Steinberg

Graduate School of Oceanography Faculty Publications

No abstract provided.

Exploration Of The Kolumbo Volcanic Rift Zone, Steven Carey, Katherine L. Croff Bell, Paraskevi Nomikou, Georges Vougioukalakis, Christopher N. Roman, Kathleen Cantner, Konstantina Bejelou, Maria Bourbouli, Julie Fero Martin

Graduate School of Oceanography Faculty Publications

No abstract provided.

Manufacturing And Evaluation Of A Biologically Inspired Engineered Mav Wing Compared To The Manduca Sexta Wing Under Simulated Flapping Conditions, Nathanial E. Deleon

Theses and Dissertations

In recent years, researchers have expressed a vested interest in the concepts surrounding flapping wing micro air vehicles (FWMAVs) that are capable of both range and complex maneuvering. Most research in this arena has found itself concentrated on topics such as flapping dynamics and the associated fluid-structure interactions inherent in the motion, however there still remains myriad questions concerning the structural qualities intrinsic to the wings themselves. Using nature as the template for design, FWMAV wings were constructed using carbon fiber and Kapton and tested under simplified flapping conditions by analyzing frozen' digital images of the deformed wing by methods …

Influence Of Electric Field On The Adsorption And Bioactivity Of Hemoglobin On A Macroporous Gold Electrode, Cui-Hong Wang, Yi-Bing Kong, Xing-Hua Xia

Journal of Electrochemistry

The adsorption and bioactivity of proteins at interfaces have been widely studied due to their important role in the construction of biosensors,bioelectronics and biofuel cells.Interfacial electric field is one of the important factors which could affect the adsorption and bioactivity of proteins at materials surfaces.It could dramatically change the adsorption density,molecular conformation and orientation at material surfaces.In this paper,the influence of interfacial electric field on the adsorption kinetics and bioactivity of hemoglobin(Hb) on a three-dimensional(3D) macroporous gold electrode surface has been studied using electrochemical methods and infrared spectroscopy.It was found that the interfacial electric field created excess surface charge which …

Electrocatalytic Oxidation Of Hydrazine At Rutin Carbon Nanotubes Modified Electrode, Hong-Fang Zhang, Qing-Lin Sheng, Jian-Bin Zheng

Journal of Electrochemistry

The electrochemical behavior and electrocatalytic oxidation of hydrazine on rutin multiwall carbon nanotubes modified glassy carbon electrode were studied by cyclic voltammetry.The experimental results indicated that the electrode exhibits good electrocatalytic activity to hydrazine at a reduced oxidation potential of 262 mV.The amperometric response of the modified electrode showed linear increase after successive addition of hydrazine in the concentration range of 2.5×10^-6~1.0×10^-4 mol·L-1 with a detection limit of 5×10^-7 mol·L^-1.

Surface-Enhanced Raman Imaging Of Intracellular Bioreduction Of Chromate In Shewanella Oneidensis, Sandeep P. Ravindranath, Kristene Henne, Dorothea Thompson, Joseph Irudayaraj

Birck and NCN Publications

This proposed research aims to use novel nanoparticle sensors and spectroscopic tools constituting surface-enhanced Raman spectroscopy (SERS) and Fluorescence Lifetime imaging (FLIM) to study intracellular chemical activities within single bioremediating microorganism. The grand challenge is to develop a mechanistic understanding of chromate reduction and localization by the remediating bacterium Shewanella oneidensis MR-1 by chemical and lifetime imaging. MR-1 has attracted wide interest from the research community because of its potential in reducing multiple chemical and metallic electron acceptors. While several biomolecular approaches to decode microbial reduction mechanisms exist, there is a considerable gap in the availability of sensor platforms to …

Crop Updates 2011 - Weeds, Grant Thompson, Abul Hashem, Catherine Borger, Peter Newman, Mike Ashworth, Glen Riethmuller, David Minkey, Harmohinder Dhammu, David Nicholson, Michael Walsh, Ray Harrington, Nicholas Woods

Crop Updates

This session covers twelve papers from different authors:

1. Herbicides for selective spot spraying application on winter weeds in chemical fallow, Grant Thompson, Landmark/Crop Circle Consulting, Geraldton

2. Management of emerging weeds within the Western Australian wheatbelt, Abul Hashem and Catherine Borger Department of Agriculture and Food

3. Integrated Weed Management (IWM) – it’s all about early sowing of a big crop, Peter Newman, Department of Agriculture and Food

4. Increased water rates improve the performance of trifluralin in minimum tillage systems, Catherine Borger1, Mike Ashworth2, Glen Riethmuller1, David Minkey2, Abul …

Identifying Horizontal Gene Transfer Using Anomalies In Protein Structures And Sequences, Venkat Ram B. Santosh

School of Computing: Dissertations, Theses, and Student Research

Genetics has traditionally focused on vertical gene transfer, which is the passing of the genetic material of an organism to its offspring. However, recent studies in genetics increased the awareness that horizontal gene transfer, which is the passing of the genetic material of an organism to another organism that is not its offspring, is also a significant phenomenon. Horizontal gene transfer is thought to play a major role in the natural evolution of bacteria, such as, when several different types of bacteria all suddenly develop the same drug resistance genes. Artificial horizontal gene transfer occurs in genetic engineering.

This thesis …

Thermodynamic, Sulfide, Redox Potential, And Ph Effects On Syngas Fermentation, Peng Hu

Theses and Dissertations

Recently, work in ethanol production is exploring the fermentation of syngas (primarily CO, CO2, and H2) following gasification of cellulosic biomass. The syngas fermentation by clostridium microbes utilizes the Wood-Ljungdahl metabolic pathway. Along this pathway, the intermediate Acetyl-CoA typically diverges to produce ethanol, acetic acid, and/or cell mass. To develop strategies for process optimization, a thermodynamic analysis was conducted that provided a detailed understanding of the favorability of the reactions along the metabolic pathway. Thermodynamic analysis provided identification of potentially limiting steps. Once these limiting reactions were identified, further thermodynamic analysis provided additional insights into the ways in which reaction …

Security Monitoring System For A Bulk Foodstuff Transport Container, Christopher Dwight Thompson, Suraj M. Alexander, William L. Christ, Brian D. Luck, James Ryan Moore, Jonathan C. Paschal, Frederick Payne, Timothy S. Stombaugh, Nasrin Tabayehnejad, Phillip C. Womble

Biosystems and Agricultural Engineering Faculty Patents

A security monitoring system provides for the secure transport of a bulk foodstuff container. The system includes an electromechanical locking mechanism allowing access by only authorized persons, a positional locator for determining the geographical position of the bulk foodstuff transport container, and a controller associated with the transport container. The controller controls operation of the electromechanical locking mechanism, stores data received from the electromechanical locking mechanism and the positional locator, and communicates with a remote data processor in near real time. A handheld user interface device is configured to control operation of the controller, to process and store data received …