Digital Commons Network^™

Plants As Bio-Indicators Of Subsurface Conditions: Impact Of Groundwater Level On Btex Concentrations In Trees, Jordan Wilson, Rachel Bartz, Matt Limmer, Joel Gerard Burken

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Numerous Studies Have Demonstrated Trees' Ability to Extract and Translocate Moderately Hydrophobic Contaminants, and Sampling Trees for Compounds Such as BTEX Can Help Delineate Plumes in the Field. However, When BTEX is Detected in the Groundwater, Detection in Nearby Trees is Not as Reliable an Indicator of Subsurface Contamination as Other Compounds Such as Chlorinated Solvents. Aerobic Rhizospheric and Bulk Soil Degradation is a Potential Explanation for the Observed Variability of BTEX in Trees as Compared to Groundwater Concentrations. the Goal of This Study Was to Determine the Effect of Groundwater Level on BTEX Concentrations in Tree Tissue. the Central …

Effect Of Dense Heat Exchanging Internals On The Hydrodynamics Of Bubble Column Reactors Using Non-Invasive Measurement Techniques, Mohammed Khloofh Al Mesfer

Doctoral Dissertations

"Given their efficiency and capital cost reduction, bubble/slurry bubble column reactors are the reactors of choice for Fischer-Tropsch (FT) synthesis, offering clean alternative fuels and chemicals. FT synthesis is an exothermic process that requires many heat exchanging tubes in order to remove heat efficiently and maintain the desired temperature and isothermal operating condition. The impact of the heat exchanging tubes (internals) on the hydrodynamics is not fully understood. Reliably designing and scaling up bubble column reactors requires proper understanding of hydrodynamics, as well as heat and mass transfer parameters.

The main objective of this work is to advance the understanding …

Phytoforensics On Energetics: Novel Plant Tissue Measure Approach And Modeling, Yuan Yuan

Doctoral Dissertations

"Explosives and energetics are common soil and groundwater pollutions. This research was to develop novel phytoforensics approaches on energetics. Four different plants species, including woody perennial trees and monocot grasses, were planted both in soil and sand reactors with continuous exposure to a mixture of explosives in the greenhouse. Time dependent assessments were carried out to determine kinetic mechanisms of uptake, transport and accumulation. Plant concentrations were analyzed by both traditional solvent extraction and novel sap analysis methods. A dynamic soil-plant system model was developed to quantify the relationship between tissue concentration and soil pore water concentration for non-volatile organic …

Nanoscale Metal Oxide And Supported Metal Catalysts For Li-Air Battery, Kan Huang

Doctoral Dissertations

"The dissertation work focuses on research and development of durable nanoscale catalysts and supports for rechargeable Li-air batteries that use aqueous catholytes. Transition metal oxides, TiO₂ and Nb₂O₅ in particular, were prepared from a sol-gel process in the form of nanocoatings (5~50 nm) on carbon nanotubes (CNTs) and studied as catalyst supports. Carbon doping in the oxides and post annealing significantly increased their electronic conductivity. Pt catalyst on the support with TiO₂ (Pt/c-TiO₂/CNTs) showed a much better oxygen reduction reaction (ORR) activity than a commercial Pt on carbon black (Pt/C). Negligible loss ( …

Large-Scale Electromagnetic Computation For Modeling And Applications, Qing Huo Liu, Lijun Jiang, Weng Cho Chew

Electrical and Computer Engineering Faculty Research & Creative Works

The papers in this special issue are devoted to the topic of large-scale electromagnetic computation methods for modeling and applicatoins. © 1963-2012 IEEE.

Multi Geophysical Parameters For Earthquake Forecasting, Ramesh P. Singh

Mathematics, Physics, and Computer Science Faculty Articles and Research

This article focuses on the importance of keeping the public aware of earthquake forecasting. This article also encourages proper seismic codes to design buildings in the seismic-prone regions because such practice can save lives and property associated with an earthquake.

Automated Extraction And Classification Of Time-Frequency Contours In Humpback Vocalizations, Hui Ou, Whitlow W.L. Au, Lisa M. Zurk, Marc O. Lammers

Electrical and Computer Engineering Faculty Publications and Presentations

A time-frequency contour extraction and classification algorithm was created to analyze humpback whale vocalizations. The algorithm automatically extracted contours of whale vocalization units by searching for gray-level discontinuities in the spectrogram images. The unit-to-unit similarity was quantified by cross-correlating the contour lines. A library of distinctive humpback units was then generated by applying an unsupervised, cluster-based learning algorithm. The purpose of this study was to provide a fast and automated feature selection tool to describe the vocal signatures of animal groups. This approach could benefit a variety of applications such as species description, identification, and evolution of song structures. The …

No-Boundary Thinking In Bioinformatics Research, Xiuzhen Huang, Barry Bruce, Alison Buchan, Clare Bates Congdon, Carole L. Cramer, Steven F. Jennings, Hongmei Jiang, Zenglu Li, Gail Mcclure, Rick Mcmullen, Jason H. Moore, Bindu Nanduri, Joan Peckham, Andy Perkins, Shawn W. Polson, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Zhongming Zhao

Electrical and Computer Engineering Faculty Research & Creative Works

Currently there are definitions from many agencies and research societies defining "bioinformatics" as deriving knowledge from computational analysis of large volumes of biological and biomedical data. Should this be the bioinformatics research focus? We will discuss this issue in this review article. We would like to promote the idea of supporting human-infrastructure (HI) with no-boundary thinking (NT) in bioinformatics (HINT).

Bio-Inspired Design, Fabrication And Testing Of Bipolar Plates For Pem Fuel Cells, Nannan Guo

Doctoral Dissertations

"The flow field of a bipolar plate distributes reactants for polymer electrolyte membrane (PEM) fuel cells and removes the produced water from the fuel cells. It greatly influences the performance of fuel cells, especially the concentration losses. Two approaches were developed to improve flow field designs in this dissertation. One is inspired by the biological circulatory structures and called bio-inspired designs, which have great potential to transport reactant efficiently and hence improve fuel cell performance. Another way is using a network-based optimization model to optimize the conventional flow field configurations, i.e., pin-type, parallel and serpentine designs, to improve flow distributions …

Investigation On The Mobile Robot Navigation In An Unknown Environment, Ahmed S. Khusheef

Theses: Doctorates and Masters

Mobile robots could be used to search, find, and relocate objects in many types of manufacturing operations and environments. In this scenario, the target objects might reside with equal probability at any location in the environment and, therefore, the robot must navigate and search the whole area autonomously, and be equipped with specific sensors to detect objects. Novel challenges exist in developing a control system, which helps a mobile robot achieve such tasks, including constructing enhanced systems for navigation, and vision-based object recognition. The latter is important for undertaking the exploration task that requires an optimal object recognition technique.

In …

Characterising The Deformation Behaviour Of Human Tooth Enamel At The Microscale, Simona O'Brien

Theses: Doctorates and Masters

Enamel plays an important role in tooth function. Optimal combinations of composition and structure endow enamel with unique mechanical properties that remain largely unexplored. Specifically, more detailed understanding of the loadbearing ability of enamel is needed to mimic it synthetically and to design next generation biocomposite materials. This research investigates the variables that influence deformation behaviour of tooth enamel in relation to its hierarchical structure. Initially, a new method was developed for preparing flat, finely polished tooth samples that were maintained in their normal hydrated state for nanoindentation testing. In contrast to conventional methods, which commonly utilise either inappropriate or …

Designing Elementary Engineering Education From The Perspective Of The Child, Beth Dykstra Van Meeteren

Dissertations and Theses @ UNI

Many concerned leaders of industry and government believe the ability to sustain our quality of life and address the grand challenges of our times is contingent upon the successful engagement of our younger children in science, technology, engineering, and mathematics (STEM). What STEM curricula, specifically engineering curricula, should address, how the curriculum should be delivered, and how the children construct an understanding of engineering are still unanswered questions. Engineering curriculum is beginning to emerge for elementary students, but does more to teach children about engineering than allowing them to develop engineering habits of mind.

This qualitative study used constant comparative …

Microencapsulation Of A Connexin-43 Mimetic Peptide As A Novel Wound Healing Agent In An Ocular Injury Model, Keith Brian Moore

Theses and Dissertations

Corneal transplantation and related surgical procedures are areas of tissue replacement which have seen promising advances. Currently, cornea transplants are one of the most common surgical procedures, with approximately 40,000 occurring each year in the United States. Still, problems exist with a 20% rejection rate, post surgical infections, and the need for a constant supply of donors. The ability to safely and quickly heal and regenerate corneal epithelia fills an area of advancement in regenerative medicine, with implications reaching beyond the scope of vision therapies toward healing of a wide range of tissues and wounds. In vivo corneal wounds were …

Osteon-Mimetic Nanocomposite Materials For Bone Regeneration, Ozan Karaman

Theses and Dissertations

The limitations of large bone defect regeneration has brought the focus of Bone Tissue Engineering research on fabricating three-dimensional bone-mimetic grafts that could enhance osteogenesis and vascularization. Osteons composed of apatite-deposited aligned collagen nanofiber layers are the fundamental building blocks of cortical bone. In natural cortical bone, mineralization is mediated by extracellular matrix (ECM) proteins with amino acid sequences rich in glutamic acid. This dissertation is focused on the establishment of a novel biomimetic approach to engineer scaffolds for healing large bone defects.

In the first part, we investigated the effect of calcium phosphate (CaP) deposition on aligned surface-modified nanofibers …

Effect Of Physiological Oxygen Levels On Osteogenic Differentiation Of Adipose-Derived Stem Cells, Suchit Sahai

Theses and Dissertations

Regenerative medicine presents exciting strategies for healing critical-size bone defects through the implantation of cells and biocompatible scaffolds. Most in vitro studies are performed in atmospheric oxygen conditions (~20%), which do not accurately mimic the CSD microenvironment. Due to damage to the vasculature at CSDs, oxygen levels fall into the hypoxic range (<5%), which can impact viability, proliferation and differentiation of the cells employed for bone regeneration. Understanding the cellular responses to hypoxia has grown primarily from study of individual molecular factors. The master regulator of adaptive responses to low oxygen availability is the nuclear factor, hypoxia-inducible factor-1. HIF-1 is a heterodimeric protein, stable below 6% O2 condition in the nucleus and has been shown to play a role in angiogenic-osteogenic coupling. We have developed a responsive, fluorescent, hypoxia detection system and determined whether HIF activity can be tracked in both 2-D and 3-D cultures. Adipose-derived stem cells (ASCs) were selected due to their broad utilization in tissue engineering strategies and characterized the influence of HIF signaling on its phenotype. The work done identified that of hypoxia impaired osteogenic differentiation of ASCs in both 2-D and 3-D cultures and HIF-1 did not mediate this effect. Ischemic preconditioning (IPC) strategy and varied protocols used represents a clinically feasible manipulation of cell preparation to help the survival of implanted ASCs and accelerate osteogenic differentiation at physiological oxygen levels.

Characterizing Hypoxia And Its Behavioral Effects In 3-Dimensional Cell Aggregates, Matthew Lorincz Skiles

Theses and Dissertations

Cell transplantation can be considered a regenerative therapy, an intervention which attempts to replace or restore the function of compromised tissue by harnessing innate properties of cells that cannot be replicated artificially. For such therapies to succeed, it will be necessary to understand and closely match the physiological conditions that govern cell behaviors in vivo. One important factor is low oxygen tension, termed hypoxia, which is often overlooked in vitro. Because oxygen insufficiency can lead to cell death, hypoxia has traditionally been viewed as a negative condition. However, hypoxia can also serve as a potent regulator of crucial cell behaviors …

Asymmetric Hydrogenation Of Α, Β-Unsaturated Carboxylic Acid Over Chiral-Modified Palladium Catalyst, Shuai Tan

Theses and Dissertations

The production of optically pure chemicals through enantioselective catalytic reaction plays a key role a variety of industrials (e.g., pharmaceutical, agrochemical). Among several established methods, chiral-modified supported transition metal catalyst has been addressed attentions since past decades due to an environmental concern. Asymmetric hydrogenation of α, β-unsaturated carboxylic acid over Pd catalyst is of particular interest in this area. Nevertheless, the spectroscopic aspect, as well as the kinetic mechanism of such reaction system are still not clearly understood and require further study. In this work, a model catalytic reaction has been investigated from both spectroscopic and kinetic view. To be …

Enantioselective Hydrogenation Of Α-Methylcinnamic Acid Over Pd/Al2o3: A Spectroscopic And Kinetic Study, Xiaojing Sun

Theses and Dissertations

Hydrogenation of C=C in α-methylcinnamic acid (MCA) is studied by both kinetic and spectroscopic method. Kinetic study was in a semi-batch reactor. The reaction activity is strongly solvent dependent, while selectivity remains almost unaffected. The reaction is zero order in hydrogen pressure and first order in MCA. The presence of cinchonidine does not affect the reaction order with respect to either acid or H2 pressure, but has a significant inhibiting effect on the reaction rate. The catalyst exhibits stable activity during the reaction with no sign of deactivation. The adsorption and hydrogenation in dichloromethane, isopropanol and 1, 4-Dioxane over the …

Urban Impact Of Dissolved Metals In The Paso Del Norte Segment Of The Rio Grande, Sumayeh Ahmad Freiwan

Open Access Theses & Dissertations

The Paso del Norte segment of the Rio Grande experiences two seasons per year; the (wet) irrigation season and the (dry) non-irrigation season. The goal of this study was to improve the understanding of occurrence and contribution of dissolved metals in this region during the non-irrigation season. The objectives of this study were to (1) evaluate the impact of anthropogenic sources of metals on the Rio Grande water quality during the non-irrigation season, and (2) estimate the metal loads carried by the flow to the downstream region of El Paso. In order to evaluate the surface water quality of the …

Optimization Of Bioprinting Process Using Design Of Experiments (Doe) And Taguchi Method, Maria Veronica Gonzalez

Open Access Theses & Dissertations

At this time there is a need for new fabrication techniques for engineering complex biological structures related to regenerative medicine, in vitro tissue analysis, and pharmaceutical testing with the purpose of placing specific cells in specific target locations. Right now, there is no enough conventional cell seeding methods that can achieve it. In order to achieve it, bio-fabrication, which is a delivery mechanism capable of placing biomaterials, cells, and bioactive macromolecules in specific target locations, comes to play an important role in this area. Among different approaches, bioprinting is one of the most useful processes that use drop-on-demand delivery mechanisms …

Adding Data Parallelism To Streaming Pipelines For Throughput Optimization, Peng Li, Kunal Agrawal, Jeremy Buhler, Roger D. Chamberlain

All Computer Science and Engineering Research

The streaming model is a popular model for writing high-throughput parallel applications. A streaming application is represented by a graph of computation stages that communicate with each other via FIFO channels. In this report, we consider the problem of mapping streaming pipelines — streaming applications where the graph is a linear chain — in order to maximize throughput. In a parallel setting, subsets of stages, called components can be mapped onto different computing resources. The through-put of an application is determined by the throughput of the slowest component. Therefore, if some stage is much slower than others, then it may …

Scanner: An Efficient And Accurate Trimming Tool For Illumina Next Generation Sequencing Reads, Xiang Zhou

All Computer Science and Engineering Research

Recent advances in High-Throughput Sequencing (HTS) technology have greatly facilitated the researches in bioinformatics field. With the ultra-high sequencing speed and improved base-calling accuracy, Illumina Genome Analyzer is currently the most widely used platform in the field. To use the raw reads generated from the sequencing machine, the 3’ adapter sequence attached to the real read in the process of ligation needs to be correctly trimmed. This is often done by some inhouse scripts or different packages with various parameters. They either use the Smith-Waterman algorithm or search for an exact match of the 3’ adapter sequence. In this report, …

Method Development For A Chemical And Biological Analysis Of Glucocorticoids In Wastewater, Maria Carmen Lozano

Open Access Theses & Dissertations

Glucocorticoids are a class of steroid hormones that can either be produced synthetically or naturally by the adrenal glands. The synthetic glucocorticoids are highly prescribed in the United States for their anti-inflammatory and immunosuppressive properties to treat a variety of ailments and diseases; however, these have been implicated in a number of adverse human conditions such as obesity, metabolic syndrome, immune-suppression, delayed puberty, adrenal insufficiency and Cushing Syndrome, among others. Ongoing research has shown that synthetic and natural hormones are transported to aquatic environments via mammalian excretion or wastewater effluent, and as a result, the release of glucocorticoids into the …

Manufacturing Nerve Guidance Conduits By Stereolithography For Use In Peripheral Nerve Regeneration, Mireya Aidee Perez

Open Access Theses & Dissertations

Nerve regeneration techniques have been studied in great depth in recent years. Peripheral nerve injuries, in particular, can be caused by accidents, falls, athletic injuries, etc. Current methods of repair include direct suturing of the 2 injured nerve ends or the use of autografts, when a nerve section is taken from another area of the body. Both methods have a series of limitations which have led researchers to study alternative methods of repair. Nerve guidance conduits may provide a viable solution because they can be modified and adapted to the patient's needs. Some conduits already exist on the market and …

Optimization Of Stress Wave-Based Nondestructive Methods In Identifying Deterioration In Concrete Structures, Hoda Azari

Open Access Theses & Dissertations

The transportation infrastructure across the United States is deteriorating and requires periodic inspection to predict the cost of repair and extent of maintenance activities, to remedy structural problems, and to ensure safety and serviceability. The use of nondestructive testing (NDT) methods in detecting and characterizing flaws in the infrastructure has become more common. Among different NDT methods, the stress wave-based methods, including ultrasonic surface waves (USW) and impact echo (IE) methods, are widely used to maintain concrete structures. In this dissertation, a complete literature review of seismic wave theory and wave propagation in plate like structures, and stress wave-based methods …

A Block Operator Splitting Method For Heterogeneous Multiscale Poroelasticity, Paul M. Delgado

Open Access Theses & Dissertations

Traditional models of poroelastic deformation in porous media assume relatively homogeneous material properties such that macroscopic constitutive relations lead to accurate results. Many realistic applications involve heterogeneous material properties whose oscillatory nature require multiscale methods to balance accuracy and efficiency in computation.

The current study develops a multiscale method for poroelastic deformation based on a fixed point iteration based operator splitting method and a heterogeneous multiscale method using finite volume and direct stiffness methods. To characterize the convergence

of the operator splitting method, we use a numerical root finding algorithm to determine a threshold surface in a non-dimensional parameter space …

An Exploration Of Social Media Use Among Multiply Minoritized Lgbtq Youth, Alfie Leanna Lucero

Open Access Theses & Dissertations

This study responds to a need for research in a fast-growing and significant area of study, that of exploring, understanding, and documenting the numerous ways that multiply marginalized LGBTQ youth between the ages of 14 and 17 use social media. The primary research question examined whether social media provide safe spaces for multiply minoritized LGBTQ youth to express and explore issues of sexuality and gender. In addition, the study explores and categorizes multiple ways that the participants interact with social media and makes comparisons to prior work with more general populations. The study provides descriptions of the participants in terms …

Design Of A Biomass-To-Biorefinery Logistics System Through Bio-Inspired Metaheuristic Optimization Considering Multiple Types Of Feedstocks, Isidoro Trueba

Open Access Theses & Dissertations

Bioenergy has become an important alternative source of energy to alleviate the reliance on petroleum energy. Bioenergy offers significant potential to mitigate climate change by reducing life-cycle greenhouse gas emissions relative to fossil fuels. The Energy Independence and Security Act mandate the use of 21 billion gallons of advanced biofuels including 16 billion gallons of cellulosic biofuels by the year 2022. It is clear that Biomass can make a substantial contribution to supplying future energy demand in a sustainable way. However, the supply of sustainable energy is one of the main challenges that mankind will face over the coming decades. …

Structure And Electronic Properties Of Pure And Nitrogen Doped Nanocrystalline Tungsten Oxide Thin Films, Vemnkata Rama Sesha Ravi Kumar Vemuri

Open Access Theses & Dissertations

Tungsten oxide (WO₃) is a multifunctional material which has applications in electronics, sensors, optoelectronics, and energy-related technologies. Recently, electronic structure modification of WO₃ to design novel photocatalysts has garnered significant attention. However, a fundamental understanding of nitrogen induced changes in the structure, morphology, surface/interface chemistry, and electronic properties of WO₃ is a prerequisite to producing materials with the desired functionality and performance. Also, understanding the effect of thermodynamic and processing variables is highly desirable in order to derive the structure-property relationships in the W-O/W-O-N material system. The present work was, therefore, focused on studying the effects …

Selection And Clustering For Disease Associated Genetic Variants, Yubo Zou

Theses and Dissertations

Epigenetics is the study of chemical reactions, which are orchestrated for the development and maintenance of an organism. Genetic or epigenetic variants (GEVs) encompass different types of genetic measures, such as Deoxyribonucleic acid (DNA) methylation at different CpG sites, expression level of genes, or single nucleotide polymorphisms (SNPs). With the development of technology, huge amount of genetic and epigenetic information is produced. However, the rich information potentially brings in challenges in data analyses. Thus it is necessary to reduce the dimension of data to improve efficiency. In my dissertation, I will focus on two directions of dimension reduction: variable selection …