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Maize Evapotranspiration, Yield Production Functions, Biomass, Grain Yield, Harvest Index, And Yield Response Factors Under Full And Limited Irrigation, Koffi Djaman, Suat Irmak, William R. Rathje, Derrel L. Martin, Dean E. Eisenhauer

Department of Agricultural and Biological Systems Engineering: Faculty Publications

South-central Nebraska is one of the most extensively irrigated areas in the U.S., with over 65,000 active irrigation wells, and maize is the major agronomical crop produced. Maize production in this region requires supplementary irrigation for maximum productivity. Effective on-farm implementation of full and limited irrigation practices for potential improvements of crop productivity requires knowledge of locally developed crop yield response to water functions. In this study, the effects of full and limited irrigation practices on maize (Zea mays L.) plant height, leaf area index (LAI), grain yield and biomass production, actual crop evapotranspiration (ET_a), yield production functions, …

Development And Evaluation Of Ordinary Least Squares Regression Models For Predicting Irrigated And Rainfed Maize And Soybean Yields, Vivek Sharma, Daran R. Rudnick, Suat Irmak

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Understanding the relationships between climatic variables and soil physical and chemical properties with crop yields on large scales is critical for evaluating crop productivity to make better assessments of local and regional food security, policy, land and water resource allocation, and management decisions. In this study, ordinary least squares(OLS) regression models were developed to predict irrigated and rainfed maize and soybean yields at the county level as a

function of explanatory variables [precipitation (P), actual crop evapotranspiration (ETa), organic matter content (OMC), cation exchange capacity (CEC), clay content (CC), and available soil water capacity (ASW)] of the dominant soil type …

Implementation Of A ”Rapid Design Challenge” In A Cross-Disciplinary Senior Capstone Course And Evaluation Of Device Performance, Abby M. Kelly, Austin Lammers, David D. Jones, Richard Stowell, Roger Hoy, Evan Curtis, Angela K. Pannier

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The senior capstone experience within the Department of Biological Systems Engineering at the University of Nebraska-Lincoln is a two-semester, two-course sequence intended to give senior students realistic design experience, working with real projects, real clients, faculty consultants, and teammates to produce a deliverable that meets the client’s needs. Students within this course sequence come from two different degree programs (agricultural engineering and biological systems engineering) and within each degree program from a variety of “emphasis areas”, e.g. biomedical engineering, environmental engineering, machine design. While the goal of this course is for students to experience a “real” design project, we felt …

Acetyl-Coa Carboxylases Are Checkpoints In Adipocyte Differentiation, Elizabeth Lyn Cordonier, Daniel Camara Teixeira, Zhonghi Han, Angela K. Pannier, Janos Zempleni

Department of Agricultural and Biological Systems Engineering: Faculty Publications

No abstract provided.

Network Analysis Of Endogenous Gene Expression Profiles After Polyethyleneimine-Mediated Dna Delivery, Timothy M. Martin, Sarah A. Plautz, Angela K. Pannier

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Background—DNA delivery systems, which transport exogenous DNA to cells, have applications that include gene therapy, tissue engineering and medical devices. Although the cationic nonviral DNA carrier polyethyleneimine (PEI) has been widely studied, the molecular factors and pathways underlying PEI-mediated DNA transfer remain largely unknown, preventing the design of more efficient delivery systems.

Methods—HEK 293 T cells were treated with polyplexes formed with PEI and pEGFPLuc encoding for green fluorescent protein (GFP). Transfected cells expressing GFP were flowseparated from treated, untransfected cells. Gene expression profiles were obtained using Affymetrix HG-U133 2.0 microarrays and differentially expressed genes were identified using R/ Bioconductor. …

Bile-Acid-Mediated Decrease In Endoplasmic Reticulum Stress: A Potential Contributor To The Metabolic Benefits Of Ileal Interposition Surgery In Ucd-T2dm Rats, Bethany P. Cummings, Ahmed Bettaieb, James L. Graham, Jaehyoung Kim, Fangrui Ma, Noreene Shibata, Kimber L. Stanhope, Cecilia Giulivi, Frederik Hansen, Jacob Jelsing, Niels Vrang, Mark Kowala, Michael L. Chouinard, Fawaz G. Haj, Peter J. Havel

Nebraska Center for Biotechnology: Faculty and Staff Publications

Post-operative increases in circulating bile acids have been suggested to contribute to the metabolic benefits of bariatric surgery; however, their mechanistic contributions remain undefined. We have previously reported that ileal interposition (IT) surgery delays the onset of type 2 diabetes in UCD-T2DM rats and increases circulating bile acids, independently of effects on energy intake or body weight. Therefore, we investigated potential mechanisms by which post-operative increases in circulating bile acids improve glucose homeostasis after IT surgery. IT, sham or no surgery was performed on 2-month-old weight-matched male UCD-T2DM rats. Animals underwent an oral fat tolerance test (OFTT) and serial oral …

Quasinovo: Algorithms For De Novo Peptide Sequencing, James Paul Cleveland

Theses and Dissertations

High-throughput proteomics analysis involves the rapid identification and characterization of large sets of proteins in complex biological samples. Tandem mass spectrometry (MS/MS) has become the leading approach for the experimental identification of proteins. Accurate analysis of the data produced is a computationally challenging process that relies on a complex understanding of molecular dynamics, signal processing, and pattern classification. In this work we address these modeling and classification problems, and introduce an additional data-driven evolutionary information source into the analysis pipeline.

The particular problem being solved is peptide sequencing via MS/MS. The objective in solving this problem is to decipher the …

Osteon-Mimetic Nanocomposite Materials For Bone Regeneration, Ozan Karaman

Theses and Dissertations

The limitations of large bone defect regeneration has brought the focus of Bone Tissue Engineering research on fabricating three-dimensional bone-mimetic grafts that could enhance osteogenesis and vascularization. Osteons composed of apatite-deposited aligned collagen nanofiber layers are the fundamental building blocks of cortical bone. In natural cortical bone, mineralization is mediated by extracellular matrix (ECM) proteins with amino acid sequences rich in glutamic acid. This dissertation is focused on the establishment of a novel biomimetic approach to engineer scaffolds for healing large bone defects.

In the first part, we investigated the effect of calcium phosphate (CaP) deposition on aligned surface-modified nanofibers …

Microencapsulation Of A Connexin-43 Mimetic Peptide As A Novel Wound Healing Agent In An Ocular Injury Model, Keith Brian Moore

Theses and Dissertations

Corneal transplantation and related surgical procedures are areas of tissue replacement which have seen promising advances. Currently, cornea transplants are one of the most common surgical procedures, with approximately 40,000 occurring each year in the United States. Still, problems exist with a 20% rejection rate, post surgical infections, and the need for a constant supply of donors. The ability to safely and quickly heal and regenerate corneal epithelia fills an area of advancement in regenerative medicine, with implications reaching beyond the scope of vision therapies toward healing of a wide range of tissues and wounds. In vivo corneal wounds were …

Effect Of Physiological Oxygen Levels On Osteogenic Differentiation Of Adipose-Derived Stem Cells, Suchit Sahai

Theses and Dissertations

Regenerative medicine presents exciting strategies for healing critical-size bone defects through the implantation of cells and biocompatible scaffolds. Most in vitro studies are performed in atmospheric oxygen conditions (~20%), which do not accurately mimic the CSD microenvironment. Due to damage to the vasculature at CSDs, oxygen levels fall into the hypoxic range (<5%), which can impact viability, proliferation and differentiation of the cells employed for bone regeneration. Understanding the cellular responses to hypoxia has grown primarily from study of individual molecular factors. The master regulator of adaptive responses to low oxygen availability is the nuclear factor, hypoxia-inducible factor-1. HIF-1 is a heterodimeric protein, stable below 6% O2 condition in the nucleus and has been shown to play a role in angiogenic-osteogenic coupling. We have developed a responsive, fluorescent, hypoxia detection system and determined whether HIF activity can be tracked in both 2-D and 3-D cultures. Adipose-derived stem cells (ASCs) were selected due to their broad utilization in tissue engineering strategies and characterized the influence of HIF signaling on its phenotype. The work done identified that of hypoxia impaired osteogenic differentiation of ASCs in both 2-D and 3-D cultures and HIF-1 did not mediate this effect. Ischemic preconditioning (IPC) strategy and varied protocols used represents a clinically feasible manipulation of cell preparation to help the survival of implanted ASCs and accelerate osteogenic differentiation at physiological oxygen levels.

Enantioselective Hydrogenation Of Α-Methylcinnamic Acid Over Pd/Al2o3: A Spectroscopic And Kinetic Study, Xiaojing Sun

Theses and Dissertations

Hydrogenation of C=C in α-methylcinnamic acid (MCA) is studied by both kinetic and spectroscopic method. Kinetic study was in a semi-batch reactor. The reaction activity is strongly solvent dependent, while selectivity remains almost unaffected. The reaction is zero order in hydrogen pressure and first order in MCA. The presence of cinchonidine does not affect the reaction order with respect to either acid or H2 pressure, but has a significant inhibiting effect on the reaction rate. The catalyst exhibits stable activity during the reaction with no sign of deactivation. The adsorption and hydrogenation in dichloromethane, isopropanol and 1, 4-Dioxane over the …

Timoshenko Beam Effects In Lateral-Mode Microcantilever-Based Sensors In Liquids (Proceedings), Joshua A. Schultz, Stephen M. Heinrich, Fabien Josse, Nicholas J. Nigro, Isabelle Dufour, Luke A. Beardslee, Oliver Brand

Civil and Environmental Engineering Faculty Research and Publications

No abstract provided.

A Simple Model For The In-Plane Rotational Response Of A Disk Resonator In Liquid: Resonant Frequency, Quality Factor, And Optimal Geometry, Mohomad S. Sotoudegan, Stephen M. Heinrich, Fabien Josse, Nicholas J. Nigro, Isabelle Dufour, Oliver Brand

Civil and Environmental Engineering Faculty Research and Publications

No abstract provided.

Cantilever-Based Resonant Gas Sensors With Integrated Recesses For Localized Sensing Layer Deposition, C. Carron, P. Getz, J. J. Su, D. S. Gottfried, Fabien Josse, Stephen M. Heinrich

Civil and Environmental Engineering Faculty Research and Publications

This work presents mass-sensitive hammerhead resonators with integrated recesses as a gas-phase chemical microsensor platform. Recesses are etched into the head region of the resonator to locally deposit chemically sensitive polymers by ink-jet printing. This permits the sensing films to be confined to areas that (a) are most effective in detecting mass loading and (b) are not strained during the in-plane vibrations of the resonator. As a result of the second point, even 5-μm thick polymer coatings on resonators with a 9-12 μm silicon thickness barely affect the Q-factor in air. This translates into higher frequency stability and ultimately higher …

Impedance Changes In Biceps Brachii Due To Isometric Contractions And Muscle Fatigue Using Electrical Impedance Myography (Eim), Travis Orth

College of Graduate Studies: Theses & Dissertations

Electrical impedance myography (EIM) is a non-invasive technique used to evaluate neuromuscular conditions by using a quantitative parameter called impedance (Z). It relies upon the application and measurement of high-frequency, low-intensity electrical current imbedded over a localized muscle to determine its opposition to current flow. In brevity, impedance determines the resistance of muscle fibers due to changes in muscle composition. The objective of this thesis was to establish a relationship between muscles at rest and during isometric contractions at various force levels(25%, 50%, and 100% of maximum voluntary contraction) of the biceps brachii over a multifrequency spectrum. Impedance measurements due …

Fate And Transport Of Antimicrobials And Antimicrobial Resistance Genes In Soil And Runoff Following Land Application Of Swine Manure Slurry, Stacy R. Joy, Shannon L. Bartelt-Hunt, Daniel D. Snow, John Gilley, Brian L. Woodbury, David B. Parker, David B. Marx, Xu Li

Department of Civil and Environmental Engineering: Faculty Publications

Due to the use of antimicrobials in livestock production, residual antimicrobials and antimicrobial resistance genes (ARGs) could enter the environment following the land application of animal wastes and could further contaminate surface and groundwater. The objective of this study was to determine the effect of various manure land application methods on the fate and transport of antimicrobials and ARGs in soil and runoff following land application of swine manure slurry. Swine manure slurries were obtained from facilities housing pigs that were fed chlortetracyline, tylosin or bacitracin and were land applied via broadcast, incorporation, and injection methods. Three rainfall simulation tests …

A Laboratory Experiment Using Nanoindentation To Demonstrate The Indentation Size Effect, Wendelin Wright, Gang Feng, William D. Nix

Faculty Journal Articles

A laboratory experiment using nanoindentation to demonstrate the indentation size effect is described. This laboratory introduces students to sophisticated instrumentation at low cost and low risk and utilizes recent research in the materials community as its foundation. The motivation, learning objectives, experimental details, data, and data analysis are presented. This experiment is intended for use in an upper-division materials science elective at the university level and has been successfully used in laboratory courses for senior undergraduates and first-year graduate students at Stanford University and Santa Clara University.

Subwavelength Surface Plasmons Based On Novel Structures And Metamaterials, Ruoxi Yang

Theses

With the rapid development of nanofabrication technology and powerful computational tools over the last decade, nanophotonics has enjoyed tremendous innovation and found wide applications in ultrahigh-speed data transmission, sensitive optical detection, manipulation of ultra-small objects, and visualization of nanoscale patterns. Surface plasmon-based photonics (or plasmonics) merges electronics and photonics at the nanoscale, creating the ability to combine the superior technical advantages of photonics and electronics on the same chip. Plasmonics focuses on the innovation of photonic devices by exploiting the optical property of metals. In particular, the oscillation of free electrons, when properly driven by electromagnetic waves, would form plasmon-polaritons …

Effect Of Rolling On Viscoelastic Fluids Using A Novel Testing Device, Aswini Mangadu

Dissertations and Theses

The purpose of this research thesis project was to develop a mechanical testing device that could enable us to load articular cartilage with a rolling/sliding motion. This novel device was then used to observe the effect of a rolling motion on the fluid film thickness of different lubricants (motor oil, synovial fluid and Hyaluronic Acid (HA)) to varying loads (1kg, 2,kg, 3kg and 4kg) and speeds (10, 25, 48 and 91 mm/s) applied on the sample fluids for 10 cycles. We were able to examine the effect of different speeds within each load for each of the fluid that was …

Design, Product Development And Risk Assessment Of Tin (Sn) Ring Electrodes As A Substitute To Silver-Silver Chloride (Ag Agci) Ring Electrodes For High Definition Transcranial Direct Current Stimulation (Hd-Tdcs), Linford Leitch

Dissertations and Theses

The objective of this research thesis is to test the viability of Tin (Sn) ring electrodes as an inexpensive alternative to sintered Silver-Silver Chloride (Ag|AgCl) ring electrodes for High Definition – transcranial Direct Current Stimulation (HD-tDCS). Throughout our initial bench top testing of tin electrodes in combination with a ‘conductive electrode gel’, the passing of a 2mA direct current on agar block showed the formation of white cloud around the anode electrode and a cluster of air bubbles on the cathode. The analysis of pertinent literature indicates that the white milky substance produced during the stimulation at the anode is …

Finite Element Study Of Transcranial Direct Current Stimulation: Customization Of Models And Montages, Dennis Q. Truong

Dissertations and Theses

Transcranial Direct Current Stimulation (tDCS) is a non-invasive neuromodulation technique that applies low amplitude current via electrodes placed on the scalp. Rather than directly eliciting a neuronal response, tDCS is believed to modulate excitability – encouraging or suppressing activity in regions of the brain depending on the polarity of stimulation. The particular application of tDCS is often determined by the electrode configuration and intensity of stimulation. MRI-derived finite element models have been developed to analyze the effect of these parameters allowing novel electrode configurations to be tested in subject specific models. By creating a subject specific model of an obese …

Application Of Computational Fluid Dynamics As A Simulation-Based Design Guide In A Microfluidic 3d Living Cell Array (3d Lca) Device, A.H. Rezwanuddin Ahmed

Dissertations and Theses

The use of computational fluid dynamics (CFD) as a tool in the aerodynamics and oil industry provides a reinforcement to efficiency in the design of aircrafts or for understanding the flow through pipes. A similar approach can be taken towards microfluidics, where traditionally devices have been designed based on experience or physiological replication, and a CFD simulation is shown post-manufacture to show the flow and diffusion patterns present. In this study, a reverse approach is suggested, by designing the device first in CFD and perform simulations on variations of alterable parameters to get insight on how the changing parameters affect …

Transport Pathway Across Hcaecs Uncer Convective Condtitions And The Role Of Apoptosis In Ldl Transport Through Hcaecs, Janpen Phupeerasupong

Dissertations and Theses

No abstract provided.

A Novel Biomaterial Enables Chemotactic Study Of Motile Central Nervous System-Derived Tumor Cells, Tanya Singh

Dissertations and Theses

"The local cell microenvironment plays an important role in maintaining the dynamics of the extracellular matrix (ECM) and the cell-ECM relationship. ECM is a complex network of macromolecules with distinct mechanical and biochemical characteristics [1]. The multifaceted interactions that occur between cells and the ECM are crucial to the regulation of processes that maintain homeostasis. These mechanisms are often deregulated during cancer onset and progression, which cause the ECM to become highly disorganized, alter the cell-matrix interactions, and promote increased hypervascularity and metastasis as these components are indicative of cancer progression. Medulloblastoma (MB) is one of the most common, malignant …

Exploring The Interaction Of Two Self-Excited Energy Harvesters, Yi Han

Dissertations and Theses

No abstract provided.

Photocrosslinked Methylcellulose Hydrogels For Controlled Protein Release, Das Dritiman

Dissertations and Theses

No abstract provided.

Drug Treatment Of Kidney Clip-Induced Hypertension In Rats; Peroxidase Tracer Spot Frequency In Rat Aorta After Chemically Induced Apoptosis, Simon Kleinbart

Dissertations and Theses

No abstract provided.

Synthesis Of 4-Azidocoumarins And Their Use In Copper-Catalyzed Azide-Alkyne Cycloaddition Reactions, Anthony J. Netsuri

Dissertations and Theses

Triazole-containing compounds have shown great biological activity ranging from antiviral, antibacterial, to anticancer, to name a few. Coumarin derivatives have also shown interesting biological activities. The combination of these bioactive compounds appears to have great promise for new and future medicines. In this work, various 4-azido-coumarins were synthesized via the transformation of the 4-hydroxy derivatives to 4-benzotriazolyloxy coumarins by reaction with the peptide coupling agent (benzotriazol-1-yloxy)tris-(dimethylamino)phosphonium hexafluorophosphate (BOP), and 1,8-diazabicycloundec-7-ene (DBU) as the base, in tetrahydrofuran (THF) solvent. The 4-benzotriazolyloxy coumarins were converted to the 4-azidocoumarins by reaction with sodium azide (NaN3), and the overall process was simplified to a …

Design, Implementation, And Performance Study Of An Open Source Eye-Control System To Pilot A Parrot Ar.Drone Quadrocopter, John M. Ettikkalayil

Dissertations and Theses

Natural user interface is a fairly new concept in the field of human-computer interaction. It is the idea of using every day natural human behaviors and actions to control a device. An example of a natural user interface is touch control technology in smartphones, tablets, and new laptops. The interaction is more direct when compared to artificial input devices like a keyboard and mouse. Though natural user interface devices might not perform as well as standard input devices for certain applications, for other applications they are now the de facto standard. A new user interface that is poised to be …

Graphene-Supported Metal Nanoparticles For Applications In Heterogeneous Catalysis, Hany Elazab

Theses and Dissertations

Due to its unique properties and high surface area, Graphene has become a good candidate as an effective solid support for metal catalysts. The Nobel Prize in Physics for 2010 was awarded to Andre Geim and Konstantin Novoselov "for groundbreaking experiments regarding the two-dimensional material graphene". Microwave-assisted synthesis of various metallic nanostructured materials was investigated for CO oxidation applications. These metallic nanostructured materials were used to convert CO to CO2 as an effective approach for carbon monoxide elimination due to its harmful effect on health and environment. In particular, this dissertation is focusing on palladium as a transition metal that …