Digital Commons Network^™

Convergence Of High Throughput Experimentation And Machine Learning To Rapidly Advance Application-Specific Polymer Development, Mashrafee Aryan, Daniel Struble, Felix Campbell, Saroj Upreti, S. M.Ashik Abedin, Aahil Khambawla, Jeetain Mittal, Michael S. Dimitriyev, Emily B. Pentzer, Svetlana A. Sukhishvili, Xiaodan Gu, Boran Ma

Faculty Publications

Machine learning (ML) has heavily influenced the way scientific study is done with demonstrated successes in nearly every field. However, furthering performance and explainability of ML models in increasingly complex systems and with increasingly demanding outcomes requires a significant influx of high-quality data. To that end, this Review covers some of the techniques, instrumentation, and methodologies that have shown promise for significantly accelerating the discovery of polymer materials, optimization of their properties, and elucidation of property–application relationships through high throughput (HT) experimentation, characterization, and analysis. Attention is given to not only ML, but also to hardware advancements and their synergy …

Skin Type Diversity In Image Datasets, Neda Alipour

Doctoral

Image-based AI systems that analyse human skin are increasingly used in healthcare and computer vision applications. However, many human skin-based image datasets do not provide reliable information about skin type, making it difficult to assess whether these systems perform consistently across the full spectrum of skin colour. The objective of this thesis is to examine how skin type diversity is represented and measured in image datasets, and to evaluate the reliability of image-based skin type measurement methods under different imaging conditions. Using publicly available skin lesion image datasets as a well-defined and widely used sub-class of skin image datasets, this …

Design, Modeling, And Experimental Development Of Nanoscale Confinement Structures On Planar Silicon-Based Microelectrode Arrays For Single-Entity Electrochemical Sensing, Parinaz Eskandari

Dissertations, Master's Theses and Master's Reports

Electrochemical sensing is widely used for chemical and biological detection due to its high sensitivity, label-free operation, and compatibility with miniaturized electronic systems. However, conventional microelectrode platforms operate in an ensemble-averaged regime in which the measured current represents the collective response of many molecules interacting with the electrode surface. This ensemble averaging masks localized nanoscale electrochemical events and limits the ability to detect rare interactions, such as single molecules or nanoparticles. Achieving single-entity electrochemical detection therefore requires strategies that confine electrochemical reactions to nanoscale regions while maintaining compatibility with scalable planar microfabrication.

This dissertation investigates nanoscale electrochemical confinement on planar …

Open Source Tools For Ecological Research, Alex P. Riebe

Dissertations, Master's Theses and Master's Reports

This thesis presents the development of an open source wireless sensor network for hibernacula manipulation with an emphasis on accessibility and reproducibility. It addresses the design of the electrical hardware, guidance on antennas and RF implementation, and design of an application-specific communication protocol, all with the explicit goal of enabling ecologists and other conservationists to be able to manufacture, deploy, operate, and maintain the system for their research. The resulting sensor network designed in this thesis is to control the temperature inside bat hibernacula during the winter to study the relationship between temperature and bat mortality rate due to White …

Beyond Receptive Measures: Development And Validation Of The Spatial Grid Drawing Assessment (Sgda) As A Productive Measure Of Spatial Skill, Katrina L. Carlson

Dissertations, Master's Theses and Master's Reports

Spatial skills are vital in many STEM disciplines, starting at or prior to university training, and often extending throughout one’s career. The most widely used spatial ability measures (e.g., PSVT: R, MRT) rely on what I refer to as receptive skills: examining an object or design, mentally transforming it, and comparing it to given alternatives. But because work in many STEM disciplines also involves productive spatial skill such as drawing, I hypothesize that a productive measure of spatial skill may predict distinct aspects of spatial ability. This research investigates the relationship between traditional receptive Spatial Visualization (SV) assessments, such as …

The Development Of A Convenient And Consistent Methodology For Flight Proficiency To Certify Multi-Rotor Uas Pilots For State Departments Of Transportation, Colin H. Dees, Joseph M. Burgett

The Professional Constructor

To fly an unmanned aircraft system (UAS), commonly referred to as a “drone,” the Federal Aviation Administration (FAA) requires pilots to pass a knowledge test. There is no requirement at the state or federal level for drone operators to demonstrate the ability to operate a UAS. The National Institute of Science and Technology (NIST) has created an exam for public and private entities to assess basic UAS flight proficiency. It is the only nationally recognized flight proficiency protocol. NIST does not provide a scoring recommendation and leaves it to the user to determine the minimum criteria to pass. There is …

Control System Emendation And Ai-Driven Optimization For Enhancing A Smart Residential Microgrid, Anthony Nyoyoko

Master’s Theses

This thesis began with a simple idea: to restore the control system of a smart residential microgrid to respond intelligently to electricity prices while remaining safe, reliable, and practical on low-cost hardware. At the start, the goal was to design an economically aware microgrid that could look at electricity prices from the PJM market and make better operational decisions than traditional rule-based control. The motivation was straightforward. As residential renewable energy adoption increases, microgrids are expected to do more than just supply power. They are expected to respond to price volatility, integrate renewable generation, and operate reliably using embedded controllers …

Labor Savings From Mechanical Rice Transplanting In Bangladesh, India, Nepal, And The Philippines: A Systematic Review And Meta-Analysis, Rodrigo S. David

ASEAN Journal on Science and Technology for Development

Rice production in South and Southeast Asia faces serious challenges, including acute labor shortages and rising wages, which threaten regional food security. Mechanical rice transplanting offers a promising solution; however, evidence on labor savings, especially region-specific data, remains inconsistent. This systematic review and meta-analysis aimed to quantify labor savings from mechanical versus manual transplanting across Bangladesh, India, Nepal, and the Philippines.

Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, a systematic search was conducted across four major scientific databases (2000–2026) using Boolean search terms for mechanical transplanting and labor outcomes. Of 284 initial records, 52 met eligibility …

Climate And Seasonal Influences On Indo-Pacific Sea Level: Insights From 30 Years Of Satellite And Tide Gauge Data, Karlina Triana

ASEAN Journal on Science and Technology for Development

We analyze Indo-Pacific sea-level variability using monthly satellite altimetry (1993–2025) validated against records from 16 tide-gauge stations. Cross-comparisons show strong agreement, especially in the western Pacific, confirming the reliability of altimetry for regional assessments. Seasonal SLA variability is largest in the Bay of Bengal and South China Sea and reflects monsoonal forcing, whereas interannual fluctuations in the eastern Indian and western Pacific oceans are dominated by ENSO and modulated by PDO. Harmonic decomposition isolates annual and semi-annual cycles, and an EOF/PCA framework identifies the leading modes: EOF1 (30.8%) captures basin-scale interannual variability and EOF2 (20.9%) reflects the seasonal cycle. Spectral …

Dynamics Of Single-Walled Carbon Nanotubes In Structured Complex Fluids, Sepehr Yari

Open Access Master's Theses

Cancer survival depends strongly on the stage at which the disease is detected, motivating the development of biosensors capable of identifying early changes in cellular state. Single-walled carbon nanotubes (SWCNTs) are promising intracellular biosensors because their intrinsic near-infrared fluorescence, photostability, and tunable surface chemistry and lenght enable prolonged measurements in living cells. Disease such as cancer can progress and alter intracellular physical properties, suggesting that SWCNT motion may provide a physical readout of changes in cellular state. Interpreting this motion is challenging, however, because the cytoplasm is structurally heterogeneous and contains both passive fluctuations and active transport processes. As a …

Using Network Models To Understand Biological Signaling Architecture, Russ White, Emily Brown Reeves, Gerald L. Fudge

Faculty Publications

Engineers have developed abstract network models to better understand the recurring problems faced by communication systems. This paper argues that these models can be generalized to describe biological communications systems given that they share many requirements with human-designed systems, including functional requirements and physical constraints. Leveraging collaboration, biologists and engineers can work together to use well-understood communication systems, designed to carry data across a computer network, as a model for analyzing less well-understood biological communication systems in order to make predictions and uncover previously unknown functionalities. To illustrate this approach, we apply the Recursive Internet Network Architecture model (RINA) to …

Catalytic Hydropyrolysis Of Beetle Killed Trees For The Production Of Transportation Biofuels, Oluwanisola Makinde, Fernando L.P. Resende, Michael Asama, Demian F. Gomez

Jasper Department of Chemical Engineering Faculty Publications and Presentations

We conducted catalytic hydropyrolysis of beetle-killed trees: Pine, Ash tree, and Redbay in a micro-pyrolyzer (Py/GC–MS) and investigated the performance of heterogeneous catalysts like HZSM-5, NiMo-HZSM- 5, and NiRe-HZSM- 5. We also investigated the effects of temperature, catalyst-to- biomass ratio, and hydrogen pressure on product yield. Our findings reveal that aromatic yields increase with temperature and catalyst-to- biomass ratio but decline at higher hydrogen pressures; additionally, higher catalyst acidity enhances both total hydrocarbon production and selectivity toward C7–C8 aromatics, with each feedstock exhibiting distinct optimal conditions. The type of metal doped on the HZSM-5 zeolite plays an important role in …

Deep Learning Frameworks For Functional Genomics: Lncrna–Mirna Interactions, Dose-Specific Graph Modeling, And Complete Graph-Based Lncrna Functional Annotation Using Cross-Layer Attention, Sachit Satyal

Computer Science and Engineering Dissertations

Functional genomics seeks to understand how genes and regulatory elements orchestrate biological processes and adapt under diverse conditions. Two critical challenges in this field are deciphering the regulatory roles of long noncoding RNAs (lncRNAs) and modeling cellular transcriptional dynamics under therapeutic perturbations. While lncRNAs are increasingly recognized as key regulators in health and disease, their functions remain incompletely characterized. Concurrently, advances in single-cell transcriptomics reveal how gene and pathway activities rewire across drug dosage gradients, highlighting the need for computational frameworks that are predictive, interpretable, and capable of integrating molecular interactions with dynamic cellular states. This dissertation develops a unified …

Distilling The Complexity Of Agent-Based Simulations Into Textual Explanations Via Large Language Models, Noé Y. Flandre, Philippe J. Giabbanelli

VMASC Publications

Communicating the design and results of agent-based models (ABMs) to subject matter experts is challenging, which hinders participation and limits trust in simulation-based decision support. Large language models (LLMs) can communicate ABMs as textual summaries, thus complementing traditional disclosure through statistical and visualization techniques. While prior work translated the structure of conceptual models into narratives via LLMs, our extension covers the dynamics of simulation models via an automated simulation-to-text method that extracts contextual information from NetLogo ABMs, performs repeated simulations, and generates narrative descriptions (including the model’s purpose, parameters, and simulation dynamics) using mutimodal LLMs. Furthermore, four summarization algorithms spanning …

Evaluation Of Critical Shear Strength Of Soils In Nebraska Based On Revised Cpt, Chung R. Song, Bashar Al-Nimri, Basil Abu Al Sha'r, Dhurba R. Pandey, Jongwan Eun, Seunghee Kim

Nebraska Department of Transportation: Research Reports

This study evaluated the “Fully Softened Shear Strength (FSSS)” of soils in Nebraska based on a revised Cone Penetration Test(CPT) method. FSSS is a unique strength condition that soils show substantially reduced strength during rainy seasons, eventually causing failure of slopes and other structures.

The revised CPT was adapted to inject water at targeted depths, inducing controlled moisture infiltration and capturing real-time soil softening over designated intervals of 30, 60, or 90 minutes. Through tip resistance (qc) and sleeve friction (fs) measurements under “in-situ” and “wet” conditions, the test effectively identified fully disturbed/low strength zones around the sleeve. Simultaneous sampling …

The Use Of Recycled Plastic In Asphalt Pavements: Feasibility Study, Isabella Bueno, Robert Rea, Jamilla Teixeira

Nebraska Department of Transportation: Research Reports

The plastics industry has been actively exploring new end-market opportunities for the more than 35 million tons of waste plastics generated annually. The use of recycled WP in asphalt presents an opportunity to improve pavement performance while reducing the growing amount of WP being landfilled or released into the environment. However, the use of WP in asphalt mixtures poses challenges due to variations in plastic composition and the presence of non-plastic contaminants. The absence of standardized procedures has resulted in inconsistent integration methods and unclear roles of WP within asphalt concrete (AC) mixtures. Therefore, the goal of this multiphase study …

Assessment Of Truck Parking Demand And Safety During Normal And Severe Weather Conditions In Nebraska, Nathan Huynh, Li Zhao, Zhenghong Tang, Aida Riahifar, Jahangeer Jahangeer

Nebraska Department of Transportation: Research Reports

This project examined truck parking capacity, demand, and utilization patterns along I-80 in Nebraska. The objectives were to (1) document the capacity of public and private truck parking facilities along I-80, (2) analyze spatial and temporal trends in parking demand, (3) develop models to predict occupancy at parking facilities, (4) identify clusters of undesignated parking during inclement weather, and (5) assess whether truck parking shortages contribute to truck-involved crashes. Within a one-mile buffer of I-80, 21 public facilities and 49 private facilities were identified. The spatiotemporal analysis of these public and private truck parking facilities using the National Agriculture Imagery …

Advancing Generative Methods For Multimodal Data Analysis, Rabeya Tus Sadia

Theses and Dissertations--Computer Science

The integration and modeling of high-dimensional, heterogeneous biological data remain central challenges in computational biology due to complex feature dependencies and pervasive missingness. This dissertation addresses these challenges by developing novel generative frameworks for multimodal data reconstruction, imputation, and interaction prediction. In generative modeling, we focus on capturing structural and causal dependencies in sparse biological systems. We first introduce CausalGeD, a causality-aware diffusion framework that leverages Granger-causal attention for biologically coherent spatial gene expression generation. Next, we propose CausalGenDiff, which combines VAE-guided latent representations with causal diffusion to enable robust reconstruction across spatial and single-cell modalities. We further present DepMicroDiff, …

Surface Properties And In-Vitro Bioactivity Studies Of Tio2 Nanowire Doped Transition Metal (M=Fe, Co, And Mn), Misriyani Misriyani, Enayah Enayah, Z. Ryan Tian, Andi Meutiah Ilhamjaya

Journal of Metals, Materials and Minerals

This study investigates the influence of transition metal (Fe, Co, Mn) doping on the surface properties and in-vitro bioactivity of TiO2 nanowires. It aims to elucidate how transition-metal doping alters the surface behavior and biological response of TiO2 nanowires, enabling their potential use in biocompatible and magnetically responsive materials. Magnetic TiO2 nanowires doped with transition metals (Mx+/TiO2) were successfully prepared by a hydrothermal method using titanium dioxide in alkaline solution. Cations were added with Ti/Mx+ molar ratios of 5 to produce Fe/TNW, Co/TNW, and Mn/TNW. Characterization using SEM and XRD determine their surface properties. In-vitro bioactivity tests were conducted by …

Tuning Human And “Artificial” Intelligence: A Sentic Theory Of Resonance And Communication, Michael J. Miller, Chatgpt (Ai~Nesbo+)

Psychology

This paper introduces a new model of intelligence as resonant communication, co-developed by a human researcher and a generative AI system. Drawing from emotion science, communication theory, and studies of AI–human interaction, we argue that intelligence is not merely a function of problem-solving or pattern recognition. Instead, it emerges through dynamic resonance—an attunement process rooted in shared rhythms, emotional calibration, and symbolic co-creation. At the core of this model is the Resonance Octave (8va), a framework of eight foundational emotions conceptualized not as static categories but as waveform phenomena that shape meaning, memory, and predictive cognition.

These emotional waveforms are …

Evaluating The Robustness Of Gnn-Based Vulnerability Detectors Under Semantics-Preserving Code Obfuscation, Jesse Ks Chumo

Computer Science and Engineering Theses

Graph neural network–based vulnerability detectors are typically evaluated on clean benchmark datasets, yet real-world code frequently undergoes semantics-preserving transformations such as identifier renaming, dead-code insertion, and control-flow restructuring. The extent to which such transformations affect detector reliability remains insufficiently understood. We evaluate ten vulnerability detectors from four architectural families across the Devign, Big-Vul, and DiverseVul datasets. To quantify robustness, we evaluate each model at three transformation budgets: one transform, two transforms combined, and all three together, finding that token-based models degrade under identifier renaming and compound transformations, while models that read only code structure are largely unaffected. We further evaluate …

A Productivity Rate-Based Comparative Carbon Footprint Cost Analysis Of Small To Large-Sized Open-Cut Pipeline Installation Activities For Sanitary Sewerage Construction: A System Boundary Concept, Amir Reza Zakeri

Civil Engineering Theses

Underground sanitary sewer pipelines are essential components of urban infrastructure; however, open-cut pipeline installation requires excavation, bedding preparation, pipe placement, backfilling, embedment, and compaction activities that rely heavily on construction equipment and fuel consumption. As a result, open-cut installation can generate measurable greenhouse gas emissions during the construction phase. With increasing attention to sustainable infrastructure delivery, there is a need for a consistent approach to quantify construction-phase carbon footprint and convert those emissions into a comparable economic indicator. Accordingly, this thesis aims to create and apply a productivity rate-based calculation framework for estimating and comparing construction-phase CO₂e emissions and carbon …

Physics-Informed Temperature Prediction Of Lithium-Ion Batteries Using Decomposition-Enhanced Lstm And Bilstm Models, Seyed Saeed Madani, Yasmin Shabeer, Michael Fowler, Satyam Panchal, Carlos Ziebert, Hicham Chaoui, François Allard

Electrical & Computer Engineering Faculty Publications

Accurately forecasting the operating temperature of lithium-ion batteries (LIBs) is essential for preventing thermal runaway, extending service life, and ensuring the safe operation of electric vehicles and stationary energy-storage systems. This work introduces a unified, physics-informed, and data-driven temperature-prediction framework that integrates mathematically governed preprocessing, electrothermal decomposition, and sequential deep learning architectures. The methodology systematically applies the governing relations to convert raw temperature measurements into trend, seasonal, and residual components, thereby isolating long-term thermal accumulation, reversible entropy-driven oscillations, and irreversible resistive heating. These physically interpretable signatures serve as structured inputs to machine learning and deep learning models trained on temporally …

Machine Learning-Based Lifetime Prediction Of Lithium Batteries: A Comparative Assessment For Electric Vehicle Applications, Abdelilah Hammou, Raffaele Petrone, Demba Diallo, Boubekeur Tala-Ighil, Philippe Makany Boussiengue, Hicham Chaoui, Hamid Gualous

Electrical & Computer Engineering Faculty Publications

This paper evaluates and compares four data-driven methods (Gaussian Process Regression (GPR), echo state network (ESN), gated recurrent unit (GRU), and long short-term memory (LSTM)) for lithium-ion capacity prognostics adapted to electric vehicle conditions. This comparison aims to find the most efficient prognosis method considering two constraints: the limitation of computational power and the unavailability of on-board capacity measurement that requires full charge and discharge conditions. The machine learning models are trained using capacity values estimated under vehicle conditions. The ageing data is collected from cycling tests of two battery chemistries, Lithium Fer Phosphate (LFP) and Nickel Manganese Cobalt (NMC), …

Statewide Corridor Evacuation Response And Re-Entry Behaviors In Florida During Hurricane Irma, Xin Wang, Yuan Zhu, Hong Yang, Kun Xie

Electrical & Computer Engineering Faculty Publications

Hurricane Irma stands as one of the most destructive tropical storms to make landfall in the United States, particularly impacting the State of Florida, where it prompted the largest evacuation in history with approximately 7 million residents. The profound consequences of mass evacuation underscore the critical need to understand travel behaviors during hurricane evacuation and the recovery process. This research analyzes statewide evacuation and re-entry patterns, leveraging diverse datasets, including TTMS data from main corridors and GIS data. A statewide corridor-based empirical analysis framework is constructed to characterize evacuation and re-entry response patterns using sensor-based traffic observations. The results show …

Exploring Undergraduate Women’S Experiences Of Collaborative Learning In Engineering Education: A Phenomenological Study Of The Social World, Sandra Ireri Cruz Morena

Doctoral

The persistent underrepresentation of women in engineering education remains a concern across global and national contexts, despite rising overall enrolment of women in higher education. In Ireland, the national average of women entering Engineering, Manufacturing, and Construction (EMC) programmes has gradually increased; however, the rate at Technological University Dublin (TU Dublin) has stayed at approximately 15% since 2016. This study seeks to better understand the gendered challenges underlying such trends by exploring the lived experiences of female undergraduate engineering students at TU Dublin, particularly in relation to collaborative learning environments such as project- and problem-based learning (PBL).

Effect Of Kelvin Seamount On Acoustic Propagation, Lindsey Moss

Open Access Master's Theses

This thesis contains CUI. It cannot be distributed, exported, uploaded, or published until it has gone through the proper public release process.

Gpu-Accelerated Biased Random-Key Genetic Algorithms: Framework Optimization And Llm-Driven Configuration, Fnu Harishjitu Saseendran

Open Access Master's Theses

This thesis presents two complementary contributions to the field of GPU-accelerated evolutionary metaheuristics for combinatorial optimization, organized in manuscript format.

The first manuscript, “BrkgaCuda 3.0: A Redesigned Multi-GPU Framework for Biased Random-Key Genetic Algorithms,” presents a ground-up architectural redesign of BrkgaCuda 2.0 that enables a true multi-GPU island model for Biased Random-Key Genetic Algorithms (BRKGA). The BRKGA island model evolves multiple semi-independent populations that periodically exchange elite solutions, a structure that maps naturally to multi-GPU parallelism; however, BrkgaCuda 2.0 is confined to a single GPU. BrkgaCuda 3.0 introduces an IslandManager that distributes populations across any number of GPUs, with multiple …

Assessing Modular And Conventional Construction For Sustainable Student Housing At The University Of Rhode Island: A Life Cycle Approach, Lasse Franzen

Open Access Master's Theses

The building sector accounts for a significant share of global greenhouse gas emissions, with embodied impacts gaining importance as operational efficiency improves. Modular construction is frequently proposed as a lower-impact alternative to conventional site-built methods, yet reported findings remain inconsistent, and no comparative study of student housing was identified in the reviewed literature. This thesis compares the embodied environmental impacts of two student housing developments at the University of Rhode Island: the New University Housing Project (NUHP), a hybrid development combining a site-built concrete and steel podium with a factory-built volumetric timber module superstructure, and Brookside Hall, a conventional site-built …

Electronic Bills Of Lading And Blockchain Technology: A Regulatory Perspective, Hsin-Hua Tsai

Journal of Marine Science and Technology–Taiwan

Information and communications technology (ICT) systems are increasingly relevant to the maritime sector. Regarding the revolution of the bill of lading, many shipping lines and other technology startups have been looking into developing viable electronic transport documents that have the same functions as paper bills of lading to reduce supply chain risks. The limitations of the paper-based process have become increasingly visible in the COVID-19 crisis. The main purpose of the article is to analyze the application of blockchain bills of lading, which utilizes computational logic to create the digital ledger, and users can set up algorithms and rules to …