Digital Commons Network^™

Computational Modeling Of Enhanced Nonlinear Optical Response In Plasmonic Waveguide Devices With Epsilon-Near-Zero Films, Kevin T. Le, Mark C. Harrison

Engineering Faculty Articles and Research

Silicon photonics faces fundamental limitations in nonlinear applications due to weak Kerr nonlinearity, substantial two-photon absorption, and coupling challenges with subwavelength structures. This work investigates epsilon-near-zero (ENZ) materials integrated into plasmonic waveguide architectures for enhanced nonlinear photonic devices. ENZ materials exhibit nonlinear refractive indices several orders of magnitude higher than conventional materials near their zero-permittivity wavelength, enabling giant optical effects over deeply sub-wavelength interaction lengths. We present finite element method simulations of plasmonic ENZ waveguides, investigating layer thickness optimization for nonlinear enhancement while minimizing optical losses. Initial modal analysis confirms superior field confinement in hybrid plasmonic-ENZ structures compared to conventional …

Development Of Hypergraph Based Deep Neural Framework For Precise Cancer Subtyping And Meta Visualization, Pooja G Ms

Theses and Dissertations

Accurate Cancer Subtyping is a cornerstone of modern oncology essential for effective diagnosis and guiding personalized treatment. Histopathological Images (HIs) which capture the microscopic structure of tissues are widely used for cancer detection and subtyping. Even though deep learning has made significant advances, existing HI based subtyping methods often focus on specific cancer types, lacking a generic framework.

A unified framework that can classify multiple cancers with high specificity is desperately needed. In response to these limitations, this thesis proposes a robust multi-cancer, multi-class subtyping framework called DSHGNet (Depthwise Separable Hypergraph Convolutional Neural Network) which integrates Depthwise Separable Convolutional Neural …

Impediments To Transforming The Healthcare Delivery System: Shifting The Paradigm From Provider Centric To Patient Centric, Elizabeth A. Regan, Manasa Devi Chinta

Faculty Publications

Introduction: 

Stated aims for digital healthcare transformation frequently cite goals for better coordinated patient-centric systems. However, despite advances in medical science, digital technologies, health policies, and billions of dollars invested over the past 25 years, most healthcare providers are far from fully realizing the demonstrated benefits of today's digital technologies for improving patient care. Sharing information across healthcare systems remains challenging. Problems with fragmentation, quality, inequities, and rising costs of care delivery persist. A recent study of 1,026 U.S. hospital systems found that only 15.8 percent achieved a digital maturity level needed to provide digitally enabled healthcare services to better …

Infrastructural Resiliency Analysis Concerning Extreme Events, Yasaman Norouzi

Theses and Dissertations

Infrastructural resiliency is critical for maintaining functionality during and after extreme events, ensuring minimal service disruptions and supporting rapid recovery. Key resiliency attributes—robustness, redundancy, resourcefulness, and rapidity—enhance infrastructure adaptability and safety. This study investigates significant factors and methods for improving resiliency, with a focus on equity and reliability. A new resiliency metric, incorporating equity as a core element, is developed using probabilistic approaches. This metric integrates structural vulnerability with accessibility, income, cost, and exposure factors to evaluate community impact on infrastructure access. To achieve this, limit state functions are defined to assess how infrastructural vulnerabilities affect diverse communities. Apart From …

Dynamic Deep Prompt Optimization For Defending Against Jailbreak Attacks On Llms, Doniyorkhon Obidov, Honggang Yu, Xiaolong Guo, Kaichen Yang

Michigan Tech Publications

Large Language Models (LLMs) demonstrate impressive capabilities across many applications but remain vulnerable to jailbreak attacks, which elicit harmful or unintended content. While model fine-tuning is an option for safety alignment, it is costly and prone to catastrophic forgetting. Prompt optimization has emerged as a promising alternative, yet existing prompt-based defenses typically rely on static modifications (e.g., fixed prefixes or suffixes) that cannot adapt to diverse and evolving attacks.

We propose Dynamic Deep Prompt Optimization (DDPO), the first jailbreak defense based on deep prompt optimization. DDPO uses the target LLM’s own intermediate layers as feature extractors to dynamically generate defensive …

Review Of Modern Methods For Identification, Forecasting, And Intelligent Control Of Wastewater Biological Treatment Processes, Mirkhalil Agzamovich Ismailov, Boburbek Zokirjon O'G'Li Mannobjonov

Chemical Technology, Control and Management

This article presents a comprehensive review of contemporary approaches to the automation and intelligent control of wastewater biological treatment processes. Particular emphasis is placed on the digitalisation of wastewater treatment plants, ranging from the implementation of automated process control systems (APCS/SCADA-based solutions) to the application of predictive algorithms and the development of digital twins of bioreactors.

Special attention is devoted to mathematical models that underpin the control of bioprocesses. The evolution of the most widely used activated sludge models—ASM1, ASM2d, and ASM3—is examined, as these models describe key processes such as microbial community growth, nitrification, denitrification, and phosphorus removal. It …

Comment On The Draft Environmental Impact Statement For New Operations For Lake Powell And Lake Mead Post-2026, Bryan Williams, Caitlyn Andrus, Brittany Fager, Matthew Fugal, Parker Hansen, Ashley Jones, Shaun Joseph, Ashley Mcallister, Braden Wilding, David Rosenberg

Civil and Environmental Engineering Student Research

We appreciate the Bureau of Reclamation’s extensive effort in preparing the Post-2026 Draft Environmental Impact Statement (Draft EIS) for operational guidelines for Lake Powell, Lake Mead, and the Colorado River Basin. This commentary will address positives, questions, and concerns from the Draft EIS. We also share recommendations for consideration in the Final EIS.

Cultivation Of Arthrospira Platensis (Spirulina) In Food-Based Industrial Wastewater For High-Yield Phycocyanin Extraction, Pavithira Sathinathan

Student Works (2020-2029)

Arthrospira platensis (Spirulina) is a filamentous cyanobacterium valued for its nutritional profile, particularly the pigment–protein phycocyanin, with potent antioxidant and anti-inflammatory properties. Despite its industrial significance, large-scale commercialization remains constrained by high cultivation costs and inefficient extraction methods. This study investigated the use of food-based industrial wastewater as an alternative nutrient medium for Spirulina cultivation, aiming to reduce production costs, enhance phycocyanin yield, and support sustainable wastewater remediation. Three types of food-based wastewater with different nutrient composition (WW1, WW2, WW3) was diluted with Kosaric medium (1:1) and used for Spirulina cultivation. The highest biomass concentration was achieved in WW2 (1.93 …

Development Of A Framework For Identifying Asphalt Pavement Cracking Distresses Using Machine Learning, Dingxin Cheng

Mineta Transportation Institute

Asphalt pavement cracking is one of the most critical distresses affecting pavement performance and service life. When pavement deteriorates, it can lead to safety hazards, higher vehicle maintenance costs, and expensive repairs for cities and states—making early detection essential for everyone who relies on the roadway system. To address this challenge, the research team developed a prototype cracking identification system that integrates a customized machine learning model with computer vision algorithms. High-resolution images collected from drones or ground-based cameras are processed within the system to automatically detect and classify major cracking types. The core of the framework utilizes the You …

Move Fast And Don’T Break Things: Collaborative Privacy Governance In Higher Education, Tyler Schroder, Chad Fenner

Research & Publications

Student-developed applications increasingly replicate or replace official university platforms, often prioritizing speed over security and privacy. This “shadow IT” ecosystem emerges from gaps in institutional tools and is amplified by AI-assisted development, which can introduce insecure defaults. These informal systems risk exposing FERPA‑protected or sensitive institutional data, as seen in student‑built directory and club‑information apps that redistributed restricted information more permissively than intended. While most universities lack clear governance mechanisms for student developers, Yale’s structured, student‑specific data‑use policy offers a notable model. This paper examines these risks and proposes a collaborative, API‑first framework that supports innovation while enforcing privacy, security, …

Feasibility Of Using Recycled Waste Plastic In Concrete Pavements In Nebraska, Amasi Hajahja, Jamilla Teixeira, George Morcous

Nebraska Department of Transportation: Research Reports

Waste plastic (WP) is a growing environmental concern due to its non-biodegradable nature, large-scale production, and harmful impact on natural resources. With nearly 75% of WP in the U.S. ending up in landfills, effective recycling strategies are urgently needed. In parallel, the limited availability of natural aggregates highlights the need for alternative materials in concrete construction. This study investigates the feasibility of using recycled waste plastic (RWP) in concrete mixtures, both as aggregates and fibers for rigid pavement applications in Nebraska. Concrete mixtures were prepared by partially replacing natural fine aggregates with recycled plastic aggregates (RPA) at replacement levels of …

Failure Of Infrastructure Systems: A Multilevel Network Analysis Of Decision-Making And Influential Behavioral Constructs, Tamima Elbashbishy, Radwa Eissa, Islam H. El-Adaway, Jeffrey S. Russell

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

High-profile failures of infrastructure systems are often attributed to design flaws. However, these incidents can also stem from a broader set of interconnected decisions made by stakeholders involved in the planning, management, and operation of these systems. While ethical guidelines and professional codes are designed to prevent such failures, cognitive biases may undermine adherence. Previous research efforts, primarily focused on ethical violations using case studies, have overlooked how behavioral ethics constructs and professional conduct could drive these breaches. This paper addresses this knowledge gap by (1) conducting an analysis of three system failure cases at the micro, meso, and macro …

Sea Level Trends Near Critical Levees In The Sacramento-San Joaquin Delta, Reyna Sanchez Gomez

Master's Theses

The Sacramento-San Joaquin Delta (Delta) levee system faces threats from rising sea levels, land subsidence, and deteriorating levees, all of which pose risks to California’s primary surface water supply. The purpose of this thesis is to assess relative sea level rise (RSLR) and estimate the spatially varying factors that influence water levels in the Delta. This thesis extends the work of Baranes et al. (2023) to the period 1975-2022 by appending recently acquired water-level records (1975-1982) to modern datasets (1982-2022) from 10 water-level stations. These water level datasets were digitized, quality-assured, and referenced to a common geodetic datum, as described …

On Signifiable Computability: Part Iii: A Note On Unnameable Functions On Natural Numbers, Vladimir A. Kulyukin

Computer Science Faculty and Staff Publications

A writing system 𝔚 on an alphabet 𝒜 is a tuple (ℜ,𝔐), where ℜ is a finite set of text formation rules and 𝔐 is a finite rule application mechanism that generates texts on 𝒜. A natural writing system forms natural language texts on an alphabet such as Sanskrit on Devanagari. An artificial writing system generates formal language texts on an alphabet such as Lisp on Unicode. Let ℕ ={0,1,2,…} be the set of natural numbers. A function on natural numbers 𝑓 :ℕ^𝑘 ↦ ℕ, 0 < 𝑘 ∈ ℕ, is nameable by a writing system on an alphabet if, and only if, the system can generate a text on the alphabet that names f and no other function. We show that there exist functions on natural numbers unnameable in principle in that they cannot be named by any writing system on any alphabet. Our results imply the following computability-theoretic hierarchy of functions on natural numbers: computable ⊊ partially computable ⊊ nameable ⊊ 𝔉, where 𝔉 is the set of functions on ℕ.

A Simulation Framework For Edge Lane Roads And Bicycle Shared Roadways, Nick Sauciur

Master's Theses

Edge Lane Roads, also referred to as Advisory Bike Lanes, are a shared roadway treatment that designates space for cyclists while allowing flexible use of the roadway by motorists. They are commonly applied on lower speed corridors and can be used both where roadway width is limited and where agencies seek to manage vehicle speeds, clarify cyclist positioning, or improve shared roadway operations. The configuration provides visually designated space for cyclists while allowing motorists to encroach into that space when yielding to opposing traffic. Although interest in these facilities is growing in North America, quantitative tools for evaluating their operational …

Portable Ice Cube Maker, Ayden Ziegler, Emiliano Hansen, Wyatt Engdahl, Dane Hansen

Mechanical Engineering

This Final Design Report outlines the senior design project undertaken by a team of mechanical engineering students at California Polytechnic State University, San Luis Obispo, for the development of a portable backpacking ice cube maker. The project aims to design, build, and test a lightweight, compact device that produces ice cubes for backpackers in remote outdoor environments. The goal is to create a functional prototype that is durable, user-friendly, and suitable for backcountry use. This document details background research, project objectives, and project plan, and current design status.

Pollinators Exhibit For Paso Robles Children’S Museum, Isabelle Moll, Matthew Moore, Joseph Hovanesian, Evan Stock, Matthew Wiecking

Mechanical Engineering

This report documents the design and development of an interactive pollination exhibit created for the Paso Robles Children’s Museum as part of the Mechanical Engineering Senior Project program. The goal of the project was to design a durable, safe, and engaging educational exhibit that introduces children to the role of pollinators in local ecosystems and agriculture through hands-on play. The final design features a triple-track system with rolling bee elements and a central pollen ball pathway that demonstrates how pollinators move between flowers and return resources to the hive. The exhibit incorporates visual feedback and locally inspired design elements to …

Dvr Service Evaluation And Fee Sufficiency Study, Mallory Brown, Andrew Martin, Jeeyen Koo, Jennifer Walton

Kentucky Transportation Center Research Report

The Kentucky Transportation Cabinet’s (KYTC) Department of Vehicle Regulation (DVR) administers numerous fees and taxes. Many administered by the two divisions in DVR — Motor Vehicle Licensing (DMVL) and Motor Carriers (DMC) — have remained unchanged for many years despite salary increases, the adoption of more complex and expensive technologies, and inflation raising administrative costs. This report provides in-depth assessments of 10 fees and taxes (selected by division administrators). Six are administered by DMVL — certificate of title, duplicate title, vehicle title history report, additional registration fee, reflectorized license plate fund, and trailer registrations — and four are managed by …

The Illusion Of Causality In Llms: A Developmentally Grounded Analysis Of Semantic Scaffolding And Benchmark–Capability Mismatches, Daisuke Akiba

Publications and Research

Recent benchmarks increasingly report that large language models (LLMs) exhibit human-like causal reasoning abilities, including counterfactual inference and intervention planning. However, many such evaluations rely on domains that are heavily represented in training data and embed strong semantic cues, raising the possibility that apparent causal competence may reflect semantic pattern recombination rather than structure-sensitive causal reasoning. Drawing on human developmental theories of causal induction, this perspective argues that genuine causal understanding requires robustness to novelty and reliance on conditional structure rather than semantic familiarity. To illustrate the testability of this claim, the paper includes a pilot demonstration using synthetic causal …

Ƒ(Cell): Software For Reproducible Analysis Of Optoretinograms, Robert F. Cooper, Mina Gaffney, Brea D. Brennan, Niko Rios

Biomedical Engineering Faculty Research and Publications

Purpose: There has been a marked increase in use of a noninvasive functional imaging technique called optoretinography (ORG). As more groups use ORGs, it is crucial to have a consistent methodology, and understand what analysis parameters influence repeatability. In this work, we present an open-source software library called ƒ(Cell) designed to facilitate reproducible and repeatable analyses of ORG data.

Methods: We designed ƒ(Cell) as a Python software library that can co-register and analyze ORG datasets, while also enabling process auditing. To validate the software, we used our previously obtained normative optoretinography datasets as well as datasets from six …

Understanding Human Arm Stiffness Modulation In Overground Phri: The Roles Of Kinematics, Perturbation, And Trunk Sway, Mohsen Mohammadi Beirami, Sambad Regmi, Devin Michael Burns, Yun Seong Song

Psychological Science Faculty Research & Creative Works

This study examines human arm kinematics during overground physical human-robot interaction (pHRI). Previous work showed humans adjust arm stiffness with changing trajectory uncertainty, but the roles of arm kinematics and muscle activation remained unclear. Building on a preliminary study, we analyzed arm movements with more participants (10 individuals) to achieve more reliable findings and examined two potential influences that arose in the preliminary study: the robot's perturbation effect (a brief hand push) and left-to-right trunk sway. Using a linear mixed-effects model, we evaluated the effects of participant, block, and trajectory condition on arm angles. Results showed minimal kinematic contribution to …

Fixel-Based Analysis Of Pretreatment Mri Identifies White Matter Abnormalities In Pediatric Anti-Nmdar Encephalitis, Daniel Ackom, Janine Taitt-Tap, Scott A. Beardsley, Ricardo Vega, Alyssa Jobe, Andrew J. D. Crow, Brian Schmit, Lileth Mondok, Pradeep Javarayee

Biomedical Engineering Faculty Research and Publications

Anti-N-methyl-D-aspartate receptor (anti-NMDAR) encephalitis is an autoimmune disorder in which conventional MRI often appears normal, leading to clinical–radiologic dissociation and hindering early diagnosis and monitoring. We retrospectively studied five pediatric patients with anti-NMDAR encephalitis and compared their pretreatment diffusion MRI to age- and sex-matched controls. Using fixel-based analysis (FBA), we quantified tract-specific white matter abnormalities at the individual level. All patients showed significantly reduced fiber density and cross-section, with patterns ranging from focal to widespread involvement. In two patients, FBA abnormalities corresponded to seizure lateralization on EEG despite normal MRI, emphasizing FBA's added value in detecting seizure-concordant injury. One patient, …

Cathy's Trike, Jameson Stengel, Victor Robles, Asher Becker

Mechanical Engineering

Cathy Hoenig needs a better way to safely steer her trike since she recently had her arm amputated at the elbow. Right now, the standard steering setup doesn’t work for her because it’s designed for someone with two arms. The main issue is that because she can't hold the steering bar with both hands, she loses control and stability while riding, which takes away from her freedom and independence. We’re looking to design some kind of support or adaptive steering system that’ll let her feel safe and confident on her trike again. Our goal is to create a solution that …

Feedback In Digital Game-Based Learning: A Taxonomy And The Design And Empirical Evaluation Of A Feedback System In A Mathematics Serious Game, André Almo

Dissertations

Digital Game-Based Learning (DGBL) is an active, student-centred pedagogical approach in which feedback plays a central role by informing learners’ actions, guiding decision-making and shaping motivation and engagement. Despite its importance, feedback in serious games is often described inconsistently and insufficiently in research, limiting comparability across studies and the accumulation of design knowledge, particularly for children. This thesis addresses these gaps through two complementary contributions: the development of a taxonomy for feedback design in digital serious games and the empirical evaluation of a taxonomy-informed feedback system in a mathematics game for primary school students. First, this work introduces the Taxonomy …

Evaluation Of Existing Wwtp Using Gps-X Modelling And Simulation Software, Mohamed Hussein Hegazy, Mohamed Ibrahim Sobhy, Mohamed Nouh Meshref, Marwan Ahmed Elghonimy

Civil Engineering

Research on ways to make WasteWater Treatment Plants (WWTPs) work better is still limited. In this study, GPS-X simulation was used to predict how a WWTP behaves under different operating conditions and to suggest ideas for future improvement. GPS-X version 8.5 was applied for dynamic modelling and simulation to check the performance of the Arab Abo Saed Wastewater Treatment Plant in Helwan, Egypt. Two operating cases were studied: one with the highest water flow and the lowest pollutant levels, and another with the lowest water flow and the highest pollutant levels. Real data from two years (2022–2023) was used for …

Analysis Of Construction Trends On California’S Central Coast, Erik G. Asplund

Construction Management

The California Central Coast experiences sustained housing demand and infrastructure pressure, yet it lacks the visible concentration of construction firms found in larger markets. This study examines why construction activity in the region appears limited despite a strong demand. Using a qualitative, interview-based approach, four construction companies who operate across Monterey, San Luis Obispo, Santa Barbara, and Ventura Counties were interviewed to identify recurring themes related to labor, environmental regulation, housing feasibility, technology adoption, and future outlooks. The study concludes that structural constraints rather than lack of opportunity limit the scalability of construction on the Central Coast.

Factors Impacting Wildland-Urban Interface (Wui) Fires: A Systematic Literature Review, Albert Jimenez

Construction Management

Fires in the wildland-urban interface (WUI) pose a significant danger to communities. The WUI refers to the space where development meets vegetation. Significant research has been conducted into wildfire and WUI vulnerability across the world to help combat vulnerability. These include the identification of factors of vulnerability to create indices that quantify vulnerability, and address scope gaps and inconsistencies within literature. However, existing research seems to be fragmented in finding the WUI vulnerability factors and often it focuses on wildfires and not WUI fires. The objective of this systematic literature review is to synthesize wildfire vulnerability factors identified in the …

Evaluating The Feasibility Of Recycled Asphalt Pavement And Warm Mix Asphalt In California Highway Construction, Ryan A. Milanesa

Construction Management

California’s highway infrastructure faces increasing material costs, limited aggregate availability, and aggressive greenhouse gas reduction mandates. Reclaimed Asphalt Pavement (RAP) offers a practical solution to reduce virgin binder demand and improve sustainability. However, Caltrans maintains conservative RAP limits due to concerns regarding stiffness related cracking and long term durability. This research evaluates the feasibility of increasing RAP content to approximately 40% when combined with Warm Mix Asphalt (WMA) technologies under California performance standards. A performance based framework was developed by reviewing federal guidance, peer-reviewed fatigue studies, life cycle cost analysis, and environmental assessment literature. Findings indicate that high RAP mixtures …

Cvj Torque Loss Dynamometer, Malaika Sriram, Coleman Brown, Zachary Norris, Logan Mast, Chris Mattis

Mechanical Engineering

This report details the design and results of a dynamometer testing rig built to measure torque losses in constant velocity joints (CVJs) for Cal Poly Racing's Baja SAE team. The rig spins a flywheel connected to articulable CVJs up to 800 RPM using a motor, then decouples it and measures the spin-down rate from 800 to 100 RPM to calculate angular acceleration and torque loss. The data collected from this dyno will be used to inform freewheel packaging for future Baja car development.

Elevating The Underrepresented And Marginalized Using Experiences In Stem (Lumens): A Stem Diversity And Inclusion Initiative, Robert Cobb Jr, Paula E. Faulkner, Deiadra Modlin, Obinna Chiekezi, Victoria Cobbold, Madison Beaudoin

Journal of Research Initiatives

The study offered a 5-week summer immersion program to address the shortage of students from underrepresented populations enrolling in degree programs and seeking careers in science, technology, engineering, and mathematics (STEM). The study also addressed the importance of offering summer immersion programs to close the achievement gap. A quantitative descriptive design was used to gather data from participants related to STEM lessons during the program. Gender, grade level, and race served as the demographic variables. The study included 21 secondary students in grades 9–12. Pre- and post-tests assessed participants' knowledge gain regarding STEM lessons. Data analyzed with SPSS version 29 …