Digital Commons Network^™

Modeling Copper Biogeochemistry In Continental Environments: 0 – 93 °C, Paul Goldsborough Helfrich

Graduate Theses & Non-Theses

Microbiomes are intertwined with copper chemistry through both toxin and trace nutrient interactions. We produced and examined nineteen metagenomes from a creek recovering from historic copper mining to investigate how anthropogenic contamination shapes microbial community structure and functional potential. We then incorporated the metagenomic profiles and concurrently collected geochemical context into multivariate models to examine correlations between habitat geochemistry and microbial ecology. Residual copper and wastewater inputs alter stream habitability across seasonal gradients. We complimented initial analyses with new insights from high temperature environments. Combined dissolved inorganic carbon (DIC), temperature, pH, and silica stress constrain photosynthesis in hydrothermal features. Geochemical …

Localized Multivariate Statistical Assessment Of United States Construction Labor Shortages, Ahmed Shiha, Islam H. El-Adaway

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Craft labor shortage is a persistent challenge facing the construction industry across various markets. The historically low geographic mobility of construction labor exacerbates and localizes labor shortages. Several research efforts relied on subjective evaluations to quantify the existence of labor shortages on a national level. As such, there is a lack of empirical quantification of labor shortages at different geospatial levels. This paper fills this knowledge gap. To this end, the authors adopted a methodology that encompassed: (1) conducting a literature review to identify and collect national-level and subnational indicators that explain the changes in labor supply and demand; (2) …

Reinforcement Learning And Virtual Human Animation: A Novel Approach To Data-Driven Animation, Portraying Dynamic, Flexible Human-Like Behaviours, Vihanga Gamage

Dissertations

Virtual characters require animation capable of portraying dynamic, context-sensitive human-like behaviours. Several approaches to generating such animation have been developed, but each carries limitations. Motion capture can produce high-fidelity animation but is expensive and ill-suited to systems that must respond in real time. Physics-based reinforcement learning (RL) enables flexible, dynamic behaviour portrayal, yet relies on simulation feedback signals that are unavailable for social gestures. Supervised approaches can learn social behaviours from motion capture data but yield agents with limited flexibility and generalisation.

This thesis presents RLAnimate, a model-based, data-driven RL framework for character animation that enables a single agent to …

Bike/Ped Data Collection And Model Calibration, Eirini Stavropoulou, Dionysios Tzamakos, Nikiforos Stamatiadis, Reginald Souleyrette, Teng Wang

Kentucky Transportation Center Research Report

Motivated by an uptick in pedestrian and bicycle traffic, as well as the inclusion of pedestrian and bicyclist weights in the Strategic Highway Investment Formula For Tomorrow, the Kentucky Transportation Cabinet (KYTC) has made significant investments in transportation facilities for nonmotorized users. Despite an intensified focus on the needs of nonmotorized users, KYTC has not yet established a formal program to track the number of people walking, biking, skateboarding, and using micromobility devices statewide. Based on a review of methods and technologies for counting nonmotorized users; analysis of counting programs established by local, state, and regional transportation agencies; and a …

Hardware And Software Design For A Portable Surgical Training Simulator, Victoria Nelson

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

More than 51 million surgeries are performed on patients annually in the United States. That number grows to 310 million surgeries performed globally each year. Most surgeons go through a minimum of five years of residency – where they train and hone their surgical skills. It is important during this time, and throughout their careers, that they get plenty of practice. Surgical training is time intensive, expensive, and frequently under-resourced. There are finite amounts of surgical training modules for students to share at their facilities. The problem of getting adequate surgical training time continues to exist after surgeons begin their …

Owl Solar-Powered Link: Duck Radio Mesh For Autonomous Monitoring, Jaden Tran, Shane Williams

Electrical Engineering

The Solar Duck Sensor Node transforms a standard DuckLink into a fully self-sustaining environmental monitor. A compact solar panel / power bank module plugs into the power ports of both the DuckLink and the Raspberry Pi Zero 2 W, keeping them charged through day-night cycles. The Pi Zero 2 W will perform local processing of sensor data. Sensor output will come from the Raspberry Pi AI Camera and its object detection capabilities. This output will be distilled into metadata and advertised over BLE. The DuckLink captures these packets, encapsulates them into LoRa payloads, and forwards them across the ClusterDuck mesh …

An Injectable, Dual-Curing Hydrogel For Controlled Bioactive Release In Regenerative Endodontics, Meisam Omidi, Daniela S. Masson-Meyers, Jeffrey M. Toth

Biomedical Engineering Faculty Research and Publications

Regenerative endodontics seeks to restore the vascularized pulp–dentin complex following conventional root canal therapy, yet reliable neovascularization within the constrained root canal remains a key challenge. This study investigates the development of an injectable, dual-curing hydrogel based on methacrylated decellularized amniotic membrane (dAM-MA) and compares its performance to a conventional gelatin methacryloyl (GelMA). The dAM-MA platform was designed for biphasic release, incorporating both free vascular endothelial growth factor (VEGF) for an initial burst and matrix-metalloproteinase-cleavable VEGF conjugates for sustained delivery. The dAM-MA hydrogel achieved shape-fidelity via thermal gelation at 37 °C and possessed tunable stiffness (0.5–7.8 kPa) after visible-light irradiation. …

The Development And Application Of A Method To Simulate Commotio Cordis Inducing Impacts For The Evaluation Of Football Chest Protective Equipment, Bianca J. Henline

All Theses

As one of the most widely played and watched contact sports in the United States, football presents a significant risk of blunt chest trauma. Thus, effective chest protection is essential to prevent rare but fatal injuries like commotio cordis. Despite this, current test methods for certifying chest protective equipment fail to account for injury metrics relevant to commotio cordis events. Recent literature identifies rib deformation and viscous criterion as critical predictors of commotio cordis, yet these metrics are not adequately addressed in the existing testing standard. Furthermore, this standard exclusively assesses chest gear specific to baseball and lacrosse through projectile …

Polyphenols For The Mitigation Of Vascular Calcification; In Vitro And In Vivo Studies, Abdullah Altuhami

All Theses

Globally, cardiovascular diseases, in most cases associated with calcification, are the main cause of death. However, currently, the only effective cure is to undergo surgery to augment or receive a healthy donor heart, which could be very difficult due to the long waiting list and the associated risks. The possibility of body rejection of the foreign organs is attributed to immunoreaction or the risk of infection, since the donor must be on immunosuppressant drugs that lower the body's immunity and facilitate the body's acceptance of the new organ as one of its own. Taking that into consideration, using tissue-engineered vascular …

Effect Of Cigarette Smoke Extract And Nutrient Deficiency On Energy Metabolism And Biosynthesis: An In Vitro Intervertebral Disc Explant Culture Study, Avery E. Madden

All Theses

Low back pain consistently ranks among the leading causes of disability worldwide, with degenerative changes in spinal intervertebral discs (IVDs) recognized as a key contributor. Degeneration arises from the disruption of mechanical and biological cues within the disc’s cartilaginous tissue, often exacerbated by aging or injury. In recent decades, cigarette smoking has also been identified as a significant risk factor, as IVD degeneration is more prevalent among individuals with a history of smoking. Smoke inhalation is thought to promote degeneration both directly, by exposing cells to water-soluble toxic chemicals in smoke; and indirectly, through nutrient deficiency resulting from vasoconstriction and …

A Three-Stage Matheuristic For The Blood Stochastic Inventory Routing Problem, Vincent F. Yu, Nabila Salsabila, Aldy Gunawan, Aldy Gunawan, Nurhadi Siswanto

Research Collection School Of Computing and Information Systems

This research introduces a blood distribution system under vendor-managed inventory that considers uncertain supply and demand. We present it as the Blood Stochastic Inventory Routing Problem, formulating it as a two-stage stochastic programming model. To solve this problem, this study proposes a three-stage matheuristic that combines a perturbation heuristic, Adaptive Large Neighborhood Search, and an exact approach. From historical data of Surabaya Blood Center in Indonesia, six sets of new instances are generated under different settings. Computational results show that our proposed three-stage matheuristic outperforms CPLEX and a two-stage matheuristic by gaining optimal or better solutions within a significantly shorter …

Computational Study Of Nonlinear Electrokinetic Phenomena In Shear-Thinning Fluids, Wai Yuen Leung

All Theses

Electrokinetic phenomena have been widely used for fluid pumping and particle manipulation in micro/nanofluidic systems. They refer to the motion of fluids or particles in response to an electric field because of the spontaneous formation of an electric double layer at the fluid-solid interface. Understanding electrokinetic phenomena in micro/nanochannels is critical for a wide range of applications across various engineering fields, such as disease diagnostics, contaminant treatment and cell analysis. To date, numerous studies have been reported on electrokinetic phenomena in Newtonian fluids, where the classical Helmholtz-Smoluchowski theory indicates a linear relationship between fluid electroosmosis/particle electrophoresis and electric field. However, …

Machine Learning Based Medical Ultrasound Image Classification And Grad-Cam Interpretation, Victoria C. Hemphill

All Theses

This work takes a step in creating a diagnostic tool for the classification decision process of Achilles tendinopathy using ultrasound images. An attention-based multiple instance learning model is developed to classify the images. Typically, doctors capture multiple ultrasound images of the Achilles tendon during a study to determine a complete diagnosis. Multiple instance models adopt this behavior by providing a single label for a set of instances (images). The images are grouped into ”bags” at the study level and passed into the model. The MIL model then uses its attention property to assign an importance score to each image to …

Visor-Zt: A Visibility, Simulation, And Operational Resilience Framework For Zero Trust Security In Ros 2, Noah Tinker

All Theses

Robotic systems are becoming more and more prevalent in modern society, with Robot Operating System 2 (ROS 2) being the dominant operating system for these implementations. Its popularity can be attributed to its design, which is purpose-built for distributed systems and asynchronous communications. However, ROS 2 security is static and therefore less capable of responding to contemporary threats and network behavior. This becomes a greater issue when considering its applications in the military and defense sectors, where security is of the highest importance. In recent years, the U.S. Department of Defense (DoD) has implemented zero trust (ZT) security based on …

A Generalizable And Privacy-Preserving Framework For Anomaly Detection In Heterogeneous Iot Environments, Mahshid Rezakhani

All Theses

With the rapid growth of Internet of Things (IoT) devices across various sectors, detecting anomalies in such systems has become increasingly challenging. IoT environments produce diverse and evolving data streams, often lacking labeled examples, which limits the effectiveness of traditional machine learning models. These models typically require frequent retraining and struggle to adapt to new deployment conditions. This thesis proposes a flexible, privacy-aware framework for anomaly detection in multivariate time series data generated by heterogeneous IoT systems. The approach integrates a long short-term memory variational autoencoder (LSTM-VAE) with contrastive learning and adversarial adaptation, enabling the model to generalize across domains, …

Optimizing Park Locations While Considering Resident Behavior, Lu Liu

All Theses

Urban parks and green-spaces significantly enhance community well-being by improving physical health, mental wellness, and environmental quality. Given these extensive benefits, ensuring fair and widespread access to urban parks represents a critical priority in urban planning. Despite the advantages of parks, optimizing their location poses unique and complex challenges distinct from traditional facility location problems, such as those involving emergency services or schools. The core distinction arises from the decentralized nature of residents’ park selection behaviors. Unlike centralized allocations typically managed by public administrators, park usage decisions are driven by individual preferences and behaviors. This decentralized decision-making introduces two additional …

Evaluating The Impact Of Activated Carbon On The Biodegradation Of Btex Compounds, Megan Barkley

All Theses

BTEX compounds—benzene, toluene, ethylbenzene and xylenes—are toxic, volatile, aromatic hydrocarbons. They are primarily found in petroleum products and can easily enter the environment. Typical remediation techniques include sorption to activated carbon, pump and treat, and bioremediation. Research suggests that combining sorption to activated carbon and bioremediation may enhance BTEX removal. This study evaluates the impact of granular activated carbon (GAC) on the biodegradation of ethylbenzene and toluene, using an enrichment culture of aerobic bacteria.

The main objectives of this study are to grow and maintain a culture that degrades BTEX compounds, evaluate the effect of activated carbon on the biodegradation …

Synthesis, Structural Characterization And Optical Studies Of Silver-Indium-(Zinc)-Chalcogenide Fluorescent Quantum Dots, Sujal Acharya

Graduate Theses and Dissertations

Developing a non-toxic, high-performance fluorescent nanomaterial is crucial for overcoming the environmental and health restrictions of current cadmium, and lead based quantum dots (QDs), which limit the application of quantum dots in optoelectronics and bioimaging. In this thesis, we synthesized environmentally friendly AgInS2 QDs by a colloidal method, systematically altering the In/Ag precursor ratio from 2 to 6 to study the impact on their optical and photophysical properties. Our goals were to find the optimal stoichiometry for maximum quantum efficiency and stability. We also investigated further improving optical and photophysical properties through shelling with ZnS. The emission spectra appeared broad, …

Study Of Ai Applications In Biomedical Data Acquisition, Communication, And Analysis: Cest Mri Acceleration And Ecg Transmissions, Adarsha Bhattarai

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation investigates the application of artificial intelligence in biomedical data acquisition, communication, and analysis to advance neurological research and to enable the early detection of cardiovascular conditions. Despite significant advances in imaging and physiological modalities, challenges persist. Imaging modalities, such as the chemical exchange saturation transfer magnetic resonance imaging (CEST MRI) technique are challenged by a prolonged data acquisition time and high operational costs. In addition, physiological modalities such as electrocardiogram (ECG) sensors face constraints in providing uninterrupted signal monitoring which is crucial for the timely detection of premature cardiac abnormalities. The primary goal of this work is to …

Evaluation Of Performance Characteristics And Groundwater Contamination Risks Associated With On-Farm Swine Carcass Disposal Via Composting And Shallow Burial With Carbon, Gustavo Castro Garcia

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation evaluates the performance of three on-farm swine carcass disposal methods: whole carcass composting (WCC), ground carcass composting (GCC), and shallow burial with carbon (SBC), focusing on biosecurity factors and groundwater contamination risks. Foreign animal diseases (FADs), such as African swine fever and classical swine fever, pose severe economic and animal well-being risks if introduced to the United States. With confirmation of an FAD, swine movement will be halted, creating an urgent need for practical, biosecure, and environmentally responsible on-farm disposal strategies for swine carcasses. Nebraska, as a leading swine-producing state, exemplifies the vulnerability of high-density livestock regions to …

Resilience Of Interdependent Transportation And Healthcare Systems: A Simulation-Driven Framework Incorporating Social Equity And Facility Optimization, S. Yasaman Ahmadi

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

The overarching goal of this dissertation is to develop an integrated, simulation-driven framework to assess and enhance the resilience of interdependent transportation and healthcare systems before, during, and after natural hazards. By examining how spatial disruptions, social vulnerability, operational constraints, and infrastructure interdependencies affect access to and functionality of hospitals, this research offers a multifaceted evaluation of system performance under stress. This dissertation examines the impact of natural hazards, particularly floods, on the interdependent transportation and healthcare systems. The proposed approach combines and advances GIS-based network analysis, graph-theoretical modeling, and discrete-event simulation to evaluate system performance under different scenarios. The …

Visceral, Neural, And Immunotoxicity Of Per- And Polyfluoroalkyl Substances: A Mini Review, Pietro Martano, Samira Mahdi, Tong Zhou, Yasmin Barazandegan, Rebecca Iha, Hannah Do, Joel Burken, Paul Ki-Souk Nam, Qingbo Yang, Ruipu Mu

Chemistry Faculty Research & Creative Works

Per- and polyfluoroalkyl substances (PFASs) have gained significant attention due to their widespread distribution in the environment and potential adverse health effects. While ingestion, especially through contaminated drinking water, is considered the primary route of human exposure, recent research suggests that other pathways, such as inhalation and dermal absorption, also play a significant role. This review provides a concise overview of the toxicological impacts of both legacy and emerging PFASs, such as GenX and perfluoro butane sulfonic acid (PFBS), with a particular focus on their effects on the liver, kidneys, and immune and nervous systems, based on findings from recent …

Experimental Evaluation And Comparison Of Football-Related Head Impacts Among Ovine, Human, And Hybrid Iii Headforms, Madysn D. Cardinal

All Dissertations

Concussions and traumatic brain injury (TBI) remains a significant public health concern, especially in American football, where repeated head impacts pose long-term risks to athlete health. While current helmet testing standards rely heavily on the Hybrid III surrogate headform to evaluate protective performance, these surrogate models lack anatomical accuracy and exclude the presence of a brain component, limiting their ability to capture the true mechanics of concussion. To address this limitation, this research developed and validated a novel inverted impact testing method that allows the impact testing of a Hybrid III headform and a cadaveric specimen. Additionally, this fixture preserves …

Secure Control And Trust Evaluation Framework For Autonomous Transportation Systems, Grace Muriithi

All Dissertations

This dissertation advances the cybersecurity of hybrid tracked vehicles (HTVs) and ship power systems (SPSs) by developing innovative cyber-attack models and corresponding defence frameworks. First, we formulate stealthy false-data-injection attacks (FDIAs) on HTV energy-management systems as a partially observable Markov decision process (POMDP) solved via deep reinforcement learning. A novel sniffing-based reward function guides the attacker to covertly degrade battery capacity and energy efficiency, which we evaluate using custom stealth–impact metrics and a sliding-window anomaly detector (Isolation Forest with Dynamic Time Warping). Additionally, we model sophisticated control-layer attacks in HTVs, including reinforcement-learning-optimised replay attacks and denial-of-service (DoS) attacks targeting generator-speed …

Understanding The Elements Of Sterile Processing Workflow: Or, Sterilization And Personnel, Sayed Rezwanul Islam

All Dissertations

The Sterile Processing Department (SPD), also known as the Central Sterile Services Department (CSSD), is an essential part of hospitals and healthcare facilities and is responsible for ensuring the cleanliness, sterility, and proper functioning of medical instruments. Sterile processing departments (SPDs) are key drivers of productivity, effectiveness, safety, and infection control in hospitals. A well-designed SPD workflow can enhance patient safety, reduce operating room (OR) delays, and improve productivity. To understand the flow of sterile processing and interactions between the OR and SPD, process maps and task analyses were developed through direct observations of the basic SPD functions: decontamination, assembly, …

Population Analysis Of Cyanobacteria In Rotating Algal Biofilm Reactors, Eric H. Matthews

All Graduate Theses and Dissertations, Fall 2023 to Present

Algal biofilms have numerous applications in wastewater treatment and bioproduct production. The Sustainable Waste-to-Bioproducts Engineering Center at Utah State University is working to develop rotating algal biofilm reactors (RABRs) to remove excess nitrogen and phosphorus from wastewater effluent while producing biomass for downstream production.

Genetic analysis of algal biofilms on various RABRs was performed to gain improved understanding of the biofilm populations. This analysis focuses on a pilot-scale RABR and how it compares to several other RABRs. Additionally, old methods of genetic analysis filtered out important cyanobacterial populations. A new method was developed to identify the cyanobacteria within the biofilms. …

Aging Effect On Effective Connectivity Within The Prefrontal-Motor Network And Postural-Related Muscle Responses During Dual-Task Paradigms, Jiahao Pan

Boise State University Theses and Dissertations

Falls are a significant global public issue for older adults, leading to severe health and social impacts. To understand the underlying mechanism of increased fall risk with aging, loss of postural automaticity has been suggested as increased prefrontal cortex and motor cortices activation, as well as worse balance performance in response to the secondary cognitive task. However, the interaction within these cortical regions and its effects on postural-related muscle responses are poorly understood. This dissertation investigated age-related changes in effective connectivity within the prefrontal-motor network, postural related lower limb muscle response, and biomechanical characteristics in response to the secondary cognitive …

A Numerical Investigation Of Erection Bridging In Double-Pitched Open-Web Steel Joists, Logan Joshua Ward

All Graduate Theses and Dissertations, Fall 2023 to Present

Open-web steel joists are truss members used to support roofs and floors in steel buildings. They are commonly used because they are lightweight and inexpensive to manufacture on a large scale but have a large load carrying capacity due to their depth. Because of this depth, these joists are very unstable laterally, which is addressed by adding bridging (horizontal or diagonal) members between them to resist rotation of the joists. One of the bridging types is erection bridging, which is used to prevent a joist from buckling laterally while steel erectors are traversing it during construction.

The current erection bridging …

Crevice Corrosion Mechanisms Of Cocrmo Alloys In Orthopedic Implants: Retrieval Analysis, Nano-Tribocorrosion And Cellular Responses, Hwaran Lee

All Dissertations

Mechanically assisted corrosion and non-mechanically (chemically) driven corrosion in modular junctions of orthopedic implants using cobalt-chromium-molybdenum (CoCrMo) alloys remain clinical concerns and may contribute to implant failure. The underlying corrosion mechanisms are not yet fully understood, leaving a critical research gap. We hypothesized that corrosion in modular junctions may be driven by aggressive local environments, including fretting, metal ion release (cobalt ion, Co²⁺), low pH and reactive oxygen species (ROS). This dissertation aims to (1) analyze corrosion modes and potential causes in modular junctions; (2) identify chemically driven corrosion modes on CoCrMo alloys using simulated inflammatory modular taper …

Self-Poled P(Vdf-Trfe) Based Composites For Energy Harvesting And Wearable Sensor Applications, Lavanya Muthusamy

All Dissertations

The growing demand for flexible, low-power, and self-powered wearable electronic systems has accelerated research interest in polymer-based sensors and energy harvesting technologies. Among piezoelectric polymer materials, Poly(vinylidene fluoride-trifluoro ethylene) [P(VDF-TrFE)], over the years, has garnered significant attention due to its unique piezoelectric properties, high dielectric constant, mechanical flexibility, thermal stability, chemical resistance, biocompatibility and compatibility with scalable fabrication processes. Despite its advantages, conventional P(VDF-TrFE)-based devices often require external poling and face limitations in integration with low-cost, flexible substrates. To overcome these limitations, this research study explores the nanofiller approach, along with facile fabrication processes, and structural design strategies aimed at …