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Pain In Fish: Evidence From Peripheral Nociceptors To Pallial Processing, Michael L. Woodruff

Animal Sentience

The target article by Sneddon et al. (2018) presents convincing behavioral and pharmacological evidence that ray-finned fish consciously perceive noxious stimuli as painful. One objection to this interpretation of the evidence is that the fish nervous system is not complex enough to support the conscious experience of pain. Data that contradict this objection are presented in this commentary. The neuroanatomy and neurophysiology of the fish nervous system from the peripheral nerves to the pallium is able to support the sentient appreciation of pain.

Sentience, The Final Frontier...., Shelley Adamo

Animal Sentience

Arguments for fish sentience have difficulty with the philosophical zombie problem. Progress in AI has shown that complex learning, pain behavior, and pain as a motivational drive can be emulated by robots without any internal subjective experience. Therefore, demonstrating these abilities in fish does not necessarily demonstrate that fish are sentient. Further evidence for fish sentience may come from optogenetic studies of neural networks in zebrafish. Such studies may show that zebrafish have neural network patterns similar to those that correlate with sentience in humans. Given the present uncertainty regarding sentience in fish, caution should be applied regarding the precautionary …

If It Looks Like A Duck: Fish Fit The Criteria For Pain Perception, Julia E. Meyers-Manor

Animal Sentience

Whereas we have denied the experience of pain to animals, including human babies, the evidence is becoming clearer that animals across a variety of species have the capacity to feel pain (Bellieni, 2012). As converging findings are collected from pain studies and the study of cognition, it is becoming harder to deny that fish are among the species that do feel pain.

The Human Nervous System Is Not The Gold Standard For Pain, Riccardo Manzotti

Animal Sentience

The basis of pain could be the causal nexus between one’s phylogenetic/ontogenetic history and one’s behavior. It might turn out that the neural implementation is immaterial to the instantiation of pain. Widely different neural structures may token the same pain-type, and nearly identical neural structures may token different types.

Time To (Finally) Acknowledge That Fish Have Emotionality And Pain, Konstantin A. Demin, Anton M. Lakstygal, Allan V. Kalueff

Animal Sentience

The increasing work using fish as a model organism calls for a better understanding of their sentience. While growing evidence suggests that pain and emotionality exist in zebrafish, many deniers continue to ignore the evidence. Here we revisit the main conceptual breakthroughs in the field that argue clearly for pain and emotionality. We call for an end to denial and a focus on studying the mechanisms of fish pain and emotionality, and their translational relevance to human conditions.

Ample Evidence For Fish Sentience And Pain, Lynne U. Sneddon, David C.C. Wolfenden, Matthew C. Leach, Ana M. Valentim, Peter J. Steenbergen, Nabila Bardine, Donald M. Broom, Culum Brown

Animal Sentience

The majority of commentaries are supportive of our position on the scepticism that muddies the waters surrounding fish pain and sentience. There is substantial empirical evidence for pain in fish. Animals’ experience of pain cannot be compared to artificial intelligence (AI) because AI can only mimic responses to nociceptive input on the basis of human observations and programming. Accepting that fish are sentient would not be detrimental to the industries reliant on fish. A more proactive discussion between scientists and stakeholders is needed to improve fish welfare for the benefit of all.

The Many Faces Of Fear And Vigilance, Guy Beauchamp

Animal Sentience

In the target article, I examined the relationship between vigilance and fear in prey animals. The joint occurrence of vigilance and other physiological responses to fear, such as increased heart rate and stress hormone release, would bolster the idea that vigilance can be a useful marker of fear. Nevertheless, a common theme in much of the empirical research is an uncoupling of vigilance and physiological correlates of fear. The commentators suggest several ways to refine the concepts of vigilance, fear, and risk. I discuss these refinements, which in the end will prove useful to assess further the relationship between vigilance …

On Crabs And Statistics, Jonathan Birch

Animal Sentience

I respond to commentaries by Elwood and Seth & Dienes and to a recent critique by Diggles, discussing the link between avoidance learning and sentience, the relevance of the clash between frequentist and Bayesian statistics, the risks to decapod welfare in aquaculture, and the broader concerns one may have about a “precautionary” approach to protecting invertebrates.

Polar Gigantism And Sea Spiders: A Study Of Respiratory Scaling, Steven Joseph Lane

Graduate Student Theses, Dissertations, & Professional Papers

All animals must breathe to survive. The types of primary respiratory structures vary across the metazoa, and the overall size and components of these structures scale with body size. The scaling of respiratory structures has been well studied in vertebrate lungs and gills, but very few, if any studies, have looked at it in terms of cutaneous gas exchange, the process where oxygen moves across the outer integument via diffusion. My dissertation has sought to fill this gap in knowledge by studying animals that use cutaneous respiration, and my work has determined both how the components of their respiratory surfaces …

Leptodactylus Validus Garman, 1888 In Colombia: Its Distribution And Identification, Andres R. Acosta Galvis, Rafael O. De Sá

Biology Faculty Publications

Leptodactylus validus is reported for the first time for Colombia, corresponding to the tenth species of the L. melanonotus species group occurring in the country. In collections, all L. validus specimens were identified as L. colombiensis. Morphological, coloration, and ecological characters are provided to differentiate the two species in Colombia. Furthermore, the distribution of L. validus is expanded based on the examination of specimens in both collections and literature records. In addition, the advertisement call of L. validus from Colombia is compared with those reported for other continental and insular populations; the calls are slightly more similar to those …

Physiological Responses To Elevated Temperature Across The Geographic Range Of A Terrestrial Salamander, Alexander J. Novarro, Caitlin R. Gabor, Cory B. Goff, Tori D. Mezebish, Lily M. Thompson, Kristine L. Grayson

Biology Faculty Publications

Widespread species often possess physiological mechanisms for coping with thermal heterogeneity, and uncovering these mechanisms provides insight into species responses to climate change. The emergence of non-invasive corticosterone (CORT) assays allows us to rapidly assess physiological responses to environmental change on a large scale. We lack, however, a basic understanding of how temperature affects CORT, and whether temperature and CORT interactively affect performance. Here, we examine the effects of elevated temperature on CORT and whole-organism performance in a terrestrial salamander, Plethodon cinereus, across a latitudinal gradient. Using water-borne hormone assays, we found that raising ambient temperature from 15 to 25°C …

Effects Of Management On Functional Diversity In Restored Tallgrass Prairie Plant Communities, Anna K. Farrell

Graduate Research Theses & Dissertations

While recent studies have embraced evaluating ecosystems through functional diversity, the focus on interspecific trait changes may limit their usefulness and application. Functional traits (traits that explain species’ responses to environmental conditions and their ecosystem roles) can provide a more nuanced understanding of how disturbances shape plant communities and the functions they perform. Further, the inclusion of intraspecific trait responses can explain a significant portion of these relationships. In ecosystem restorations, management strategies can act as environmental drivers and disturbances that affect community structure. This study examined how three environmental drivers (grazer presence, prescribed fire, and age) in restored grasslands …

The Effect Of Self-Recognition In The Competition Between Genets Of Solidago Altissima, Charles Jaques

Masters Theses

Competition is a major driving force in the abundance, distribution, and diversity within any biological system. Plants are more likely to suffer reductions in fitness as a consequence of competition, as they typically occur in dense communities. Individuals within these populations must respond to both inter- and intraspecific competition. Recent studies suggest that the ability to distinguish kin from non-kin may play an integral role in the success of individuals within different plant populations and communities. However, a less known interaction is that between individual clones within a genet as they grow, spread, and begin to interact with nearby rival …

Impact Of Giant Miscanthus (Miscanthus X Giganteus) Cultivation On Midwestern Farmland Birds, Matthew Craffey

Masters Theses

Giant Miscanthus (Miscanthus x giganteus) is a promising bioenergy feedstock, newly introduced to North America. However, the qualities that make Giant Miscanthus an attractive bioenergy feedstock may pose challenges to local wildlife. To assess the impacts of Giant Miscanthus on Midwestern farmland birds, I conducted point count and vegetation surveys at three sites in east-central Illinois where Giant Miscanthus was being cultivated. I used occupancy modeling to assess the relative influence of Giant Miscanthus on five species relative to other habitat and landscape characteristics. Dickcissel (Spiza Americana), Eastern Meadowlark (Sturnella magna), and Red-Winged Blackbird …

Evaluation And Demographic Response Of The Shovelnose Sturgeon Commercial Caviar Fishery In The Wabash River, Jessica L. Thornton

Masters Theses

Shovelnose sturgeon (Scaphirhynchus platorynchus Rafinesque) are considered one of the last commercially viable options for sturgeon roe harvest. Due to the collapse of several marine sturgeon fisheries and the Similarity of Appearances provision which protect shovelnose sturgeon in only a part of their range, the caviar fishery in the Wabash River remains an important point of supply for this lucrative natural resource. In this thesis, I presented an evaluation of the shovelnose sturgeon commercial caviar fishery in the Wabash River. More specifically, I described the demographic response of this population to continued exploitation over a 10-year period. Additionally, I …

Impact Of Temperature Increase On Freshwater Fish Species: Energetics And Muscle Mechanics Of Two Centrarchids, Israt Jahan

Masters Theses

Fishes have evolved physiologically to live within a specific range of environmental variation and existence outside of that range can be stressful or fatal. These ranges can coincide for fishes that evolved in similar habitats. This study investigates physiological processes limiting thermal tolerance, specifically how changes in water temperature affect the swimming energetics and muscle mechanics in largemouth bass (Micropterus salmoides) and bluegill (Lepomis macrochirus). I focused on the impact of temperature change at the muscle level in these two species and the capacity to adapt to rapid changes in the environment. Fish were housed at …

Potential For Climate Induced Methane Hydrate Dissociation, Graham Macwilliams

Pomona Senior Theses

Methane hydrates are frozen deposits of methane and water found in high pressure or low temperature sediments. When these deposits destabilize, large quantities of methane can be emitted into the atmosphere. This is significant to climate change because methane has 25 times more greenhouse gas potential than Carbon Dioxide. Worldwide, it is estimated there are between 2500 and 10000 gigatons of methane stored in hydrate deposits. This represents more carbon than all fossil fuels on Earth. It is estimated that between 200 and 2000 gigatons of methane are stored in hydrates in Arctic waters acutely vulnerable to greenhouse warming. Over …

Lewis’S Woodpecker Nest Success And Habitat Selection In Cottonwood Floodplain Versus Burned Conifer Forests, William M. Blake

Graduate Student Theses, Dissertations, & Professional Papers

Breeding habitat selection influences reproductive outcomes. Habitat selection may be adaptive and benefit populations, but it can also be maladaptive with negative consequences for populations. Understanding habitat selection and its influence on reproductive success, especially in species of concern, is critical for effective management. Lewis’s Woodpecker (Melanerpes lewis) is a Species of Concern that has experienced national population declines. We studied its abundance and reproductive success in two commonly selected breeding forest types (i.e., cottonwood floodplain and mixed-conifer burned), and nest-site characteristics (nest availability, food availability, and vegetation attributes) that have the potential to yield strong differences in …

Avian Community Responses To Bison Grazing In North American Intermountain Grasslands, Danielle A. Fagre

Graduate Student Theses, Dissertations, & Professional Papers

Grassland and shrubland songbird species are a guild of conservation concern in North America. Many of these species have experienced severe population declines, due to habitat loss and land use change. This makes the conservation and management of remaining habitat of crucial importance for this guild. Grazing by large herbivores is an ecosystem process in grassland systems, and in North America, one of the major historic grazers was the Plains bison (Bison bison). Bison are considered ecosystem engineers, because they modify habitat to be more or less suitable for other species, such as grassland and shrubland songbirds. Bison …

The Ethosophy Of The Grizzly Man: Timothy Treadwell's Three Ethologies, Blake L. Ginsburg

Graduate Student Theses, Dissertations, & Professional Papers

This paper explores the ethical appropriateness and significance of Timothy Treadwell’s life among the bears and foxes of Alaska’s Katmai National Park and Preserve. In an attempt to reveal the formative and transformative aspects of Treadwell’s project, I rely upon an ethological framework developed by Matthew Calarco that moves beyond the narrow conception of ethology as a scientific practice aimed at systematic and rigorous documentation of the quantifiable aspects of animal behavior. While many people might be hesitant to conceive of Treadwell’s project as an ethological one, I hope to illuminate the ways in which his life among bears and …

Vertical Distribution Of Meroplankton And Bivalve Competition In A Well-Mixed Estuary, Jennifer M. Raabe

UNF Graduate Theses and Dissertations

If we want to understand how meroplankton utilize the water column and how their vertical distribution may influence horizontal advection, it is important to study their behavior in the various environments where they exist. In a well-mixed system with physical cues dampened, and no vertical layering, these organisms will have to depend on environmental cues such as light, tidal current, and tide cycle, as well as their own swimming ability to migrate vertically. Plankton and water samples were collected at three depths (near surface, midwater, near bottom) during the summers of 2013 and 2014 from sites within the main channel …

The Effects Of The Red Tide Producing Dinoflagellate, Karenia Brevis, And Associated Brevetoxins On Viability And Sublethal Stress Responses In Scleractinian Coral: A Potential Regional Stressor To Coral Reefs, David A. Reynolds

UNF Graduate Theses and Dissertations

Coral cover is in decline on a global scale, with increased mortality events being attributed to a number of global and regional stressors. While the impacts of global stressors (e.g. sea surface temperature rise, ocean acidification) are well documented, there is growing interest in identifying and understanding the impacts of regional stressors. The reason for this change in focus is that regional stressors can often work in combination, sometimes synergistically, with global stressors and that stressors on a regional scale tend to be more easily mitigated by management practices. One regional stressor that impacts a myriad of marine organisms in …

Environmental Factors Affecting Hatch Success In The Loggerhead Sea Turtle (Caretta Caretta), Mattie J. Whitesell

College of Graduate Studies: Theses & Dissertations

The loggerhead turtle (Caretta caretta) is a species federally listed as “threatened” whose global populations are declining. Georgia Department of Natural Resources conservation protocols for this species require the daily monitoring of nesting activity and permit physical relocation of nests which are at risk of being eroded or flooded by storms and high tides in order to increase hatch success--the proportion of hatched to unhatched eggs. Relocated nests are moved to an area with higher elevation in order to avoid flooding, but other variables such as increased temperature and decreased moisture are introduced when relocating. For years temperature …

Arthropod Diets In Chihuahuan Desert Snakes, Victor Manuel Parga

Open Access Theses & Dissertations

Over the past century, studies in herpetology regarding snake diets have been commonly focused on those species that feed or specialize in vertebrate prey items. For those that feed primarily on invertebrates however, little work has been done in determining diet specializations and comparing diets within a community of species. This Thesis focuses on small species of snakes that feed primarily on arthropods in a Chihuahuan Desert community, and will investigate if these are diet generalists or specialists. To this end, stomach contents were examined from preserved specimens of the following species: Rena humilis and Rena dissecta (Leptotyphlopidae), Gyalopion canum …

Estimating Exploitation Rates In The Alabama Red Snapper Fishery Using A High-Reward Tag–Recapture Approach, Dana K. Sackett, Mattgew Catalano, J. Marcus Drymon, Sean P. Powers, Mark Albins

University Faculty and Staff Publications

Accurate estimates of exploitation are essential to managing an exploited fishery. However, these estimates are often dependent on the area and vulnerable sizes of fish considered in a study. High-reward tagging studies offer a simple and direct approach to estimating exploitation rates at these various scales and in examining how model parameters impact exploitation rate estimates. These methods can ultimately provide a better understanding of the spatial dynamics of exploitation at smaller local and regional scales within a fishery—a measure often needed for more site-attached species, such as the Red Snapper Lutjanus campechanus. We used this approach to tag 724 …

Compression And Relaxation Of Fishing Effort In Response To Changes In Length Of Fishing Season For Red Snapper (Lutjanus Campechanus) In The Northern Gulf Of Mexico, Sean P. Powers, Kevin Anson

University Faculty and Staff Publications

A standard method used by fisheries managers to decrease catch and effort is to shorten the length of a fishery; however, data on recreational angler response to this simple approach are surprisingly lacking. We assessed the effect of variable season length on daily fishing effort, measured by using numbers of boat launches per day, anglers per boat, and anglers per day from video observations, in the recreational sector of the federal fishery for red snapper (Lutjanus campechanus) in coastal Alabama. From 2012 through 2017, season length fluctuated from 3 to 40 d. Daily effort, measured by using mean number of …

Massively Parallel Computational Studies Of Material Response At High Strain Rate Deformation, Jayalath Abeywardhana Mudiyanselage Madawa Abeywardhana

Open Access Theses & Dissertations

Large scale molecular dynamics (MD) simulations are now commonly utilized to study materials at extreme conditions: high pressure and/or temperatures and ultra-high strain rates of deformation. A variety of emerging architectures such as general purpose graphics processing units (GP-GPU) and many-integrated core (MIC) architecture as well as new execution models have changed the traditional approach of high-performance computing. ExMatEx, the DoE initiative for enabling exa-scale (10^18 flops) performance in scientific applications, has developed several proxy applications to facilitate co-design of novel algorithms and hardware by software developers and microchip vendors.

We have used CoMD, a proxy application for classical MD, …

Effects Of Increasing Deciduous Shrub Litter On Ecosystem Functioning In Alpine Tundra, Alejandro Emmanuel Benhumea

Open Access Theses & Dissertations

Rising temperatures due to global warming have resulted in rapid environmental changes in northern environments, resulting in an increase in deciduous shrub growth which has the potential to alter soil ecosystem properties and processes. In order to address some potential mechanisms by which shrubs alter ecosystem properties and processes, we designed an experiment which separated the effects of physical shrub presence and the effects of litter quantity in a fully factorial experiment on a north facing alpine plateau in the southwest Yukon, Canada. Specifically, we asked the following questions: What are effects of shrub litter, independent of shrub presence, on …

Biologically Available Phosphorus In Biocrust-Dominated Soils Of The Chihuahuan Desert, Grace Margaret Crain

Open Access Theses & Dissertations

In desert soils, phosphorus (P) is an important limiting nutrient and its cycling characteristics are less understood compared to nitrogen and carbon. Phosphorus cycling is controlled by both geochemical and biological factors. Traditionally, P availability has been characterized via sequential extraction analyses such as Hedley fractionation, but newly developed extraction methods allow for the examination of more biologically relevant P fractions, providing insight on mechanisms of P acquisition by plants and microbes. We examined these P cycling features in the context of biological soil crusts (biocrusts), which have been found to be important drivers of nutrient cycling and have the …

Comparative Phylogeography, Taxonomy, And Neuroanatomy Of Montane Chameleons In The Albertine Rift, Central Africa, Daniel Hughes

Open Access Theses & Dissertations

How do traits vary across the tree of life? Our ability to address this question is diminished if: A taxonomic group has a poorly sampled phylogeny, a species goes extinct before their systematic position is resolved, or a trait is inadequately characterized for detailed studies. In the current era of mass extinction, it is imperative to not only accelerate species discovery through traditional studies in taxonomy and expeditionary research, but also to increase rescue efforts for all types of data before poorly understood species and potentially undescribed traits are lost. Here, an integrative taxonomic approach was used and novel methods …