Digital Commons Network^™

Shoreline Characterization In The Northern Indian River Lagoon, Melinda Donnelly, Michelle Shaffer, Suzanne Connor, Linda Walters

CEELAB Research Data

The purpose of this project was to evaluate current conditions of estuarine shorelines in the northern section of the Indian River Lagoon system, including Mosquito Lagoon, north Indian River, and Banana River. From January 2016 through June 2018, we evaluated structural and functional characteristics of 374 miles of shoreline, from Ponce Inlet in Volusia County to Sebastian Inlet in Brevard County (11,000+ data points). Hard-armoring accounted for approximately 50% of total shoreline, evenly divided between shoreline with bulkheads (25%) and hardened slopes (25%). Forty-five percent of shoreline without hard-armoring had anthropogenic alterations (i.e. mosquito impoundments, railroads and roadways, residential and …

Ncer Assistance Agreement Annual Progress Report For Grant #83582401 - Assessment Of Stormwater Harvesting Via Manage Aquifer Recharge (Mar) To Develop New Water Supplies In The Arid West: The Salt Lake Valley Example, Ryan Dupont, Joan E. Mclean, Richard C. Peralta, Sarah E. Null, Douglas B. Jackson-Smith

Civil and Environmental Engineering Faculty Publications

The goals of the original proposed project remain the same, that is, to test the hypothesis that Managed Aquifer Recharge (MAR) for stormwater harvesting is a technically feasible, socially and environmentally acceptable, economically viable, and legally feasible option for developing new water supplies for arid Western urban ecosystems experiencing increasing population, and climate change pressures on existing water resources. The project is being carried out via three distinct but integrated components that include: 1) Monitoring of existing distributed MAR harvesting schemes involving a growing number of demonstration Green Infrastructure (GI) test sites; 2) Integrated stormwater/vadose zone/groundwater/ ecosystem services modeling; and …

Bats Of Saint Lucia, Lesser Antilles, Scott C. Pedersen, Gary G. Kwiecinski, Hugh H. Genoways, Roxanne J. Larsen, Peter A. Larsen, Carleton J. Phillips, Robert J. Baker

University of Nebraska State Museum: Mammalogy Papers

Eight species of bat have been previously recorded from the island of Saint Lucia: Noctilio leporinus, Monophyllus plethodon, Artibeus jamaicensis, Brachyphylla cavernarum, Ardops nichollsi, Sturnira paulsoni, Molossus molossus, and Tadarida brasiliensis. Herein, we add a ninth species to the fauna—Pteronotus davyi. These nine species represent nine genera from four families: Noctilionidae, Mormoopidae, Phyllostomidae, and Molossidae. This fauna includes four trophic guilds: N. leporinus (piscivore/insectivore), M. plethodon (nectarivore/pollenivore), A. jamaicensis × schwartzi, B. cavernarum, A. nichollsi, and S. paulsoni (frugivores), and P. davyi, M. molossus, and …

Multi-Metric Conservation Assessment For The Imperiled Clinch Dace, Michael James Moore, Donald J. Orth, Eric M. Hallerman

Southeastern Fishes Council Proceedings

Planning frameworks allow managers to spatially prioritize actions to promote species conservation. Traditional aquatic conservation planning frameworks are often organized at the ecological community or ecosystem level, which often neglect imperiled taxa occupying species-poor assemblages. In this study, we develop a multi-metric conservation assessment for the 15 geographically distinct candidate conservation areas (CCAs) occupied by the imperiled Clinch Dace (Chrosomus sp. cf. saylori). Clinch Dace habitat is threatened by anthropogenic landscape alterations, especially for coal mining and timber harvest. Our framework used four metrics to assess the conservation value of each subpopulation of Clinch Dace namely: “habitat …

Actuarial Senescence In A Dimorphic Bird: Different Rates Of Ageing In Morphs With Discrete Reproductive Strategies, M. L. Grunst, A. S. Grunst, Vincent A. Formica, M. L. Korody, A. M. Betuel, M. Barcelo-Serra, R. A. Gonser, E. M. Tuttle

Biology Faculty Works

It is often hypothesized that intra-sexual competition accelerates actuarial senescence, or the increase in mortality rates with age. However, an alternative hypothesis is that parental investment is more important to determining senescence rates. We used a unique model system, the white-throated sparrow (Zonotrichia albicollis), to study variation in actuarial senescence. In this species, genetically determined morphs display discrete mating strategies and disassortative pairing, providing an excellent opportunity to test the predictions of the above hypotheses. Compared to tan-striped males, white-striped males are more polygynous and aggressive, and less parental. Tan-striped females receive less parental support, and invest more into parental …

Phylogeny And Population Genetic Analyses Reveals Cryptic Speciation In The Bombus Fervidus Species Complex (Hymenoptera: Apidae), Jonathan B. Koch, Juanita Rodriguez, James P. Pitts, James P. Strange

Ecology Center Publications

Bumble bees (Bombus Latrielle) are significant pollinators of flowering plants due to their large body size, abundant setae, and generalist foraging strategies. However, shared setal coloration patterns among closely and distantly related bumble bee species makes identification notoriously difficult. The advent of molecular genetic techniques has increased our understanding of bumble bee evolution and taxonomy, and enables effective conservation policy and management. Individuals belonging to the North American Bombus fervidus species-complex (SC) are homogenous in body structure but exhibit significant body color phenotype variation across their geographic distribution. Given the uncertainty of the genealogical boundaries within the SC, some …

Courtship Behavior, Communication, And Copulation In Tigrosa Annexa, Samuel White

Scholars Week

The evolution of multimodal communication, where signalers use multiple signal components in multiple sensory modalities, has become the subject of investigation by many researchers. Signaling puts males at risk of predation, so why do males of some species evolve extra signals that may increase this risk? In some wolf spider species, males incorporate many visual and vibrational signals into a display that they use to attract a female for mating. Female spiders are often aggressive toward courting males and so the male display also functions to decrease the odds of cannibalism. Female wandering spiders deposit silk containing pheromones that communicate …

Does Experience With Sagebrush In Utero And Early In Life Influence Use Of Sagebrush By Sheep?, Juan J. Villalba, Fred Provenza, Ashley Longmore

Poisonous Plant Research (PPR)

Learning from mother begins early in the developmental process and can have lifelong effects when it comes to foraging behavior. Pregnancy is not just an incubation period but a starting point for animal well-being and disease later in life. A better understanding of the effects that early exposure to unpalatable feeds impinges on their use later in life may help create management plans that utilize grazing animals to their full potential as landscape manipulators.

Thus, the objective of this research was to explore how experience in utero and early in life with sagebrush (Artemesia tridentata spp. tridentata) -a …

Behavioral Thermoregulation And Thermal Mismatches Influence Disease Dynamics In Amphibians, Erin Louise Sauer

USF Tampa Graduate Theses and Dissertations

Amphibians are currently the most threatened vertebra taxa on the planet. Hundreds of species are thought to have gone extinct while thousands more have been listed as threatened or endangered over the past few decades. Habitat loss, invasive species, climate change, and disease are all thought to have partially contributed to these declines. Two pathogens in particular, infectious viruses in the genus Ranavirus (simply referred to as ranavirus) and the fungus Batrachochytrium dendrobatidis (Bd), have been associated with global mass mortality events of amphibians. Virulent pathogens such as these tend to impose strong selective pressures on their hosts driving the …

Meta-Analysis Challenges A Textbook Example Of Status Signalling And Demonstrates Publication Bias, Alfredo Sánchez-Tójar, Shinichi Nakagawa, Moisès Sánchez-Fortún, Dominic A. Martin, Sukanya Ramani, Antje Girndt, Veronika Bókony, Bart Kempenaers, András Liker, David F. Westneat, Terry Burke, Julia Schroeder

Biology Faculty Publications

The status signalling hypothesis aims to explain within-species variation in ornamentation by suggesting that some ornaments signal dominance status. Here, we use multilevel meta-analytic models to challenge the textbook example of this hypothesis, the black bib of male house sparrows (Passer domesticus). We conducted a systematic review, and obtained primary data from published and unpublished studies to test whether dominance rank is positively associated with bib size across studies. Contrary to previous studies, the overall effect size (i.e. meta-analytic mean) was small and uncertain. Furthermore, we found several biases in the literature that further question the support available …

No Evidence For Kin Protection In The Expression Of Sickness Behaviors In House Mice, Patricia C. Lopes, Per Block, Alice Pontiggia, Anna K. Lindholm, Barbara König

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

When infected, animals change their behaviors in several ways, including by decreasing their activity, their food and water intake, and their interest in social interactions. These behavioral alterations are collectively called sickness behaviors and, for several decades, the main hypotheses put forward to explain this phenomenon were that engaging in sickness behaviors facilitated the fever response and improved the likelihood of host survival. However, a new hypothesis was recently proposed suggesting that engaging in sickness behaviors may serve to protect kin. We tested this kin protection hypothesis by combining a field and a laboratory experiment in house mice. In both …

Speciation And Hybridization In Jamaican-Endemic Streamertail Hummingbirds (Trochilus Polytmus And T. Scitulus), Caroline D. Judy

LSU Doctoral Dissertations

Streamertails hummingbirds (Trochilus polytmus and T. scitulus) are recently diverged sister taxa that appear to have speciated in situ on the island of Jamaica. They are distinguished by male bill color, a secondary sexual trait that is coral red in T. polytmus and jet black in T. scitulus. They hybridize in a narrow zone where their ranges meet in eastern Jamaica. In Chapter 2, I performed a formal population survey of T. scitulus to determine the size of the population, which was unknown. I determined that the total population contains well over 100,000 individuals despite its limited …

Habitat Segregation Between Brown Bears And Gray Wolves In A Human-Dominated Landscape, Cyril Milleret, Andrés Ordiz, Guillaume Chapron, Harry Peter Andreassen, Jonas Kindberg, Johan Månsson, Aimee Tallian, Petter Wabakken, Camilla Wikenros, Barbara Zimmermann, Jon E. Swenson, Håkan Sand

Ecology Center Publications

Identifying how sympatric species belonging to the same guild coexist is a major question of community ecology and conservation. Habitat segregation between two species might help reduce the effects of interspecific competition and apex predators are of special interest in this context, because their interactions can have consequences for lower trophic levels. However, habitat segregation between sympatric large carnivores has seldom been studied. Based on monitoring of 53 brown bears (Ursus arctos) and seven sympatric adult gray wolves (Canis lupus) equipped with GPS collars in Sweden, we analyzed the degree of interspecific segregation in habitat selection …

Embryonic Origin And Genetic Basis Of Cave Associated Phenotypes In The Isopod Crustacean Asellus Aquaticus., Hafasa Mojaddidi, Franco Fernandez, Priscilla A. Erickson, Meredith E. Protas

Natural Sciences and Mathematics | Faculty Scholarship

Characteristics common to animals living in subterranean environments include the reduction or absence of eyes, lessened pigmentation and enhanced sensory systems. How these characteristics have evolved is poorly understood for the majority of cave dwelling species. In order to understand the evolution of these changes, this study uses an invertebrate model system, the freshwater isopod crustacean, Asellus aquaticus, to examine whether adult differences between cave and surface dwelling individuals first appear during embryonic development. We hypothesized that antennal elaboration, as well as eye reduction and pigment loss, would be apparent during embryonic development. We found that differences in pigmentation, eye …

Engaging Students In Fundamental Biological Concepts Through Un Sustainability Goals, Sowmya Anjur, Donald Dosch

Faculty Publications & Research

Advanced Biological Systems is year-long introductory biology course for Juniors at IMSA. It is aligned with the United Nations Sustainable Development goals, the use of which has been identified as an initiative for curriculum development. These goals help to bring purpose to students’ learning. We have identified three of the seventeen goals as guideposts for our curriculum. These are clean water and sanitation, sustainable cities and communities, and good health and well-being. In this presentation, we will share our curriculum development process and examples of instruction linked to these UN goals.

The Paradoxical Giant Hummingbird: Comparison Of Andean And Coastal Subspecies With Respect To Blood, Migration, And Genes, Jessie L. Williamson

Shared Knowledge Conference

The Giant Hummingbird (Patagona gigas) is twice as large as the next largest hummingbird species and has long been considered paradoxical with respect to flight biomechanics. It is also an extreme outlier in other respects. For example, it is the only hummingbird species that breeds above 4,000 m elevation and also along the beaches of the Pacific Ocean. The high Andean populations of Giant Hummingbird (P. g. peruviana) that we have studied previously have a beta-hemoglobin genotype (serine at beta-hemoglobin A positions 13 and 83) that is characterized by high O2-affinity and is only shared with four unrelated hummingbird taxa …

Rainfall Changes Alter Plant Communities In Chihuahuan Desert Grasslands, Timothy Ohlert

Shared Knowledge Conference

Variations in New Mexico’s climate have been detected over the past century and are expected to continue into the future. Some of these climatic changes result in more frequent instances of extreme drought events and alterations of monsoon seasonality, with monsoons being pushed later into the fall. Such changes could make our Chihuahuan Desert plant communities less productive, shift the abundance of the plant species, or have other destabilizing impacts. Our experiment manipulated precipitation in two desert grassland communities at the Sevilleta National Wildlife Refuge near Socorro, NM. Some plots were subjected to an extreme drought event, receiving only 33% …

Wild Bees Of Grand Staircase-Escalante National Monument: Richness, Abundance, And Spatio-Temporal Beta-Diversity, Olivia Messinger Carril, Terry Griswold, James Haefner, Joseph S. Wilson

All PIRU Publications

Interest in bees has grown dramatically in recent years in light of several studies that have reported widespread declines in bees and other pollinators. Investigating declines in wild bees can be difficult, however, due to the lack of faunal surveys that provide baseline data of bee richness and diversity. Protected lands such as national monuments and national parks can provide unique opportunities to learn about and monitor bee populations dynamics in a natural setting because the opportunity for large-scale changes to the landscape are reduced compared to unprotected lands. Here we report on a 4-year study of bees in Grand …

Local Adaptation In Mainland Anole Lizards: Integrating Population History And Genome–Environment Associations, Ivan Prates, Anna Penna, Miguel Trefaut Rodrigues, Ana Carolina Carnaval

Publications and Research

Environmental gradients constrain physiological performance and thus species’ ranges, suggesting that species occurrence in diverse environments may be associated with local adaptation. Genome–environment association analyses (GEAA) have become central for studies of local adaptation, yet they are sensitive to the spatial orientation of historical range expansions relative to landscape gradients. To test whether potentially adaptive genotypes occur in varied climates in wide‐ranged species, we implemented GEAA on the basis of genomewide data from the anole lizards Anolis ortonii and Anolis punctatus, which expanded from Amazonia, presently dominated by warm and wet settings, into the cooler and less rainy Atlantic …

Use Of A Towed Camera System Along The West Florida Shelf: A Case Study Of The Florida Middle Grounds Benthic Marine Communities, Katie S. Davis

USF Tampa Graduate Theses and Dissertations

As technologies advance the study of ocean dynamics, new approaches to vexing problems of scale and process are becoming more widely available. Originally conceived as a tool primarily for indexing the abundance of near-bottom fishes, the Camera-based Assessment and Survey System (C-BASS) may also be an effective tool for monitoring benthic invertebrate resources vulnerable to natural and anthropogenic perturbations, and for characterizing the composition of benthic communities to inform spatial management. Using still images derived from the C-BASS video of benthic transects within the Florida Middle Grounds, I documented the abundance of benthic habitat-forming functional groups—sponges, algae, and corals—and noted …

Integrating Towed Underwater Video With Multibeam Acoustics For Mapping Benthic Habitat And Assessing Reef Fish Communities On The West Florida Shelf, Alexander Ross Ilich

USF Tampa Graduate Theses and Dissertations

Using a towed underwater video camera system, benthic habitats were classified along transects in a popular offshore fishing area on the West Florida Shelf (WFS) known as “The Elbow.” Additionally, high resolution multibeam bathymetry and co-registered backscatter data were collected for the entire study area. Using these data, full coverage geologic and biotic habitat maps were developed using both unsupervised and supervised statistical classification methodologies. The unsupervised methodology used was k-means clustering, and the supervised methodology used a random forest algorithm. The two methods produced broadly similar results; however, the supervised methodology outperformed the unsupervised methodology. The results of the …

Index To Volume 86

Nebraska Bird Review

16 pages, from Aguillon, Stepfanie 103, to Yungbluth, Linda 149

13 Terrestrial Wetlands, Randall Kolka, Carl T Trettin

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

The objective of this chapter is to characterize the distribution of carbon stocks and fluxes in terrestrial wetlands within North America. The approach was to synthesize available literature from field measurements with analyses of resource inventory data to estimate wetland area, carbon stocks, and net ecosystem exchange (NEE) of carbon and methane (CH4) fluxes of terrestrial wetlands (see Appendices 13A, p. 547, and 13B, p. 557, for details1). Then, the findings employed from large-scale simulation studies provided additional context, with consideration given to the effects of disturbance regimes, restoration and creation of terrestrial wetlands, and the application of modeling tools …

A Glimpse Into The Ecological Communities Of Camp Greenwood, Rachael Noteboom

Honors Projects

There is a Presbyterian summer camp near Greenville, Michigan that is home to beautiful wetlands with a variety of wildlife. This camp is nestled between multiple larger connected lakes and surrounded by many large waterfront properties. The number of campers has dwindled in recent years and the council in charge of the land is desperate to sell the most ecologically important sections of the camp, if not all of the land, to developers for multi-million dollar price tags. My dad is on the committee trying to convince the council and the community to save the camp from development.

I surveyed …

Troubled Waters: Threats And Extinction Risk Of The Sharks, Rays And Chimaeras Of The Arabian Sea And Adjacent Waters, Rima W. Jabado, Peter M. Kyne, Riley A. Pollom, David A. Ebert, Colin A. Simpfendorfer, Gina M. Ralph, Shakha S. Al Dhaheri, K. V. Akhilesh, Khadeeja Ali, Mohamud Hassan Ali

Biological Sciences Faculty Publications

The extinction risk of sharks, rays and chimaeras is higher than that for most other vertebrates due to low intrinsic population growth rates of many species and the fishing intensity they face. The Arabian Sea and adjacent waters border some of the most important chondrichthyan fishing and trading nations globally, yet there has been no previous attempt to assess the conservation status of species occurring here. Using IUCN Red List of Threatened Species Categories and Criteria and their guidelines for application at the regional level, we present the first assessment of extinction risk for 153 species of sharks, rays and …

Carnivorous Pitcher Plants Eat A Diet Of Certain Spiders, Regardless Of What's On The Menu, Marc A. Milne, Deborah A. Waller

Biological Sciences Faculty Publications

The purple pitcher plant, Sarracenia purpurea, is a low-lying carnivorous plant that uses pitcher-shaped leaves to catch arthropod prey for nutrition. Spiders make up a significant portion of these prey. To determine the tendency of specific spider taxa to be captured by the plant, we compared the composition (by taxonomic family) of three spider assemblages: those captured by the plant, those residing on or over the plant, and those found nearby in the local environment. Although there were some broad similarities within the three spider assemblages, significant differences existed when specific families and guilds were considered. While some families …

Examining Patterns In Nest Predation Using Artificial Nests, Victoria L. Simonsen

School of Natural Resources: Dissertations, Theses, and Student Research

The use of artificial nests to study the predation of avian nests has faced disregard by ecologists due to inconsistencies found between the survival rates of real and artificial nests across studies and reviews. The negative perception of artificial nests providing an inconsistent assessment of survival has thus fostered the perception that artificial nests are a secondary option to be used to overcome logistical hurdles associated with achieving sufficient sample sizes in systems where study species are rare or elusive, or as merely a preliminary method to study predation across gradients. We argue that the greatest mistake ecologists have made …

Museum Metabarcoding: A Novel Method Revealing Gut Helminth Communities Of Small Mammals Across Space And Time, Stephen E. Greiman, Joseph A. Cook, Vasyl V. Tkach, Eric P. Hoberg, Damian M. Menning, Andrew G. Hope, Sarah A. Sonsthagen, Sandra L. Talbot

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Natural history collections spanning multiple decades provide fundamental historical baselines to measure and understand changing biodiversity. New technologies such as next generation DNA sequencing have considerably increased the potential of museum specimens to address significant questions regarding the impact of environmental changes on host and parasite/pathogen dynamics. We developed a new technique to identify intestinal helminth parasites and applied it to shrews (Eulipotyphla: Soricidae) because they are ubiquitous, occupy diverse habitats, and host a diverse and abundant parasite fauna. Notably, we included museum specimens preserved in various ways to explore the efficacy of using metabarcoding analyses that may enable identification …

Stable Isotopes Reveal Opportunistic Foraging In A Spatiotemporally Heterogeneous Environment: Bird Assemblages In Mangrove Forests, Christina Buelow, April Reside, Ronald Baker, Marcus Sheaves

University Faculty and Staff Publications

Environmental heterogeneity can foster opportunistic foraging by mobile species, resulting in generalized resource and habitat use. Determining species’ food web roles is important to fully understand how ecosystems function, and stable isotopes can provide insight into the foraging ecology of bird assemblages. We investigated flexibility of food choice in mangrove bird assemblages of northeast Australia by determining whether species’ carbon and nitrogen isotopic values corresponded to foraging group classification described in the literature, such as groups of species that are omnivorous or insectivorous. Subsequently, we evaluated foraging group isotopic niche size, overlap, degree of individual specialization, and the probable proportions …

The Phylogenetic Signal In Tooth Wear: What Does It Mean?, Larisa Desantis, Mikael Fortelius, Frederick E Grine, Christine Janis, Thomas M Kaiser, Gildas Merceron, Mark A Purnell, Ellen Schulz-Kornas, Juha Saarinen, Mark F. Teaford, Peter S Ungar, Indrė Žliobaitė

Faculty Publications & Research of the TUC College of Osteopathic Medicine

A new study by Fraser et al (2018) urges the use of phylogenetic comparative methods, whenever possible, in analyses of mammalian tooth wear. We are concerned about this for two reasons. First, this recommendation may mislead the research community into thinking that phylogenetic signal is an artifact of some sort rather than a fundamental outcome of the evolutionary process. Secondly, this recommendation may set a precedent for editors and reviewers to enforce phylogenetic adjustment where it may unnecessarily weaken or even directionally alter the results, shifting the emphasis of analysis from common patterns manifested by large clades to rare cases.