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Symbiotic Bacteria Can Colonize Closely-Related, But Not Distantly-Related Species Of Its Host Dictyostelium Discoideum, Rory Vu Mather

Undergraduate Research Symposium Posters

Some of the closest interactions between organisms can be found within symbioses, where different individuals live in close physiological contact and either benefit or harm the other. A powerful kind of benefit comes when bacterial symbionts produce amino acids or provide digestive capabilities outside the host’s ability, in essence taking advantage of the other’s genetic catalog. One such symbiosis is that of the social amoeba Dictyostelium discoideum and its bacterial symbionts Burkholderia agricolaris, Burkholderia hayleyella, and Burkholderia bonneia. In this symbiosis, Burkholderia provide the capability of carrying food bacteria to their host, an advantageous trait when bacterial food is rare. …

Just Preservation, Adrian Treves, Francisco J. Santiago-Ávila, William S. Lynn

Animal Sentience

We are failing to protect the biosphere. Novel views of conservation, preservation, and sustainability are surfacing in the wake of consensus about our failures to prevent extinction or slow climate change. We argue that the interests and well-being of non-humans, youth, and future generations of both human and non-human beings (futurity) have too long been ignored in consensus-based, anthropocentric conservation. Consensus-based stakeholder-driven processes disadvantage those absent or without a voice and allow current adult humans and narrow, exploitative interests to dominate decisions about the use of nature over its preservation for futurity of all life. We propose that authentically non-anthropocentric …

Who Needs A Mind When You Have Thousands Of Fingers?, Yoram Gutfreund

Animal Sentience

Mather’s target article aligns with a common tendency of granting the octopus a mind or consciousness. But what is the meaning of an octopus’s mind? Is it part of nature or is it observer-dependent, imputed to satisfy our own psychological needs? In this commentary, I build on my own experience with octopuses to challenge the notion that we can conclusively attribute a mind to an animal; and I question the scientific usefulness of doing so.

Octopus Minds Must Lead To Octopus Ethics, Barbara J. King, Lori Marino

Animal Sentience

Mather argues convincingly for the existence of minds in octopuses based largely on laboratory experiments. Many of these experiments are highly invasive and involve mutilation and death. Moreover, octopuses are now being hailed as a “new model” for biological research and are being enthusiastically bred in captivity, both for research and for food. We argue that the compelling evidence for mind in octopuses must be accompanied by intense scrutiny of the ethics that shape how we treat them and that the intrinsic value of their individual lives must be recognized.

The Perfecting Of The Octopus, Ila France Porcher

Animal Sentience

Cephalopods split away from the phylogenetic tree about half a billion years ago, and octopus evolution has been accelerated by an extremely low survival rate. This helps explain why this unusual animal presents qualities found in no other. It has a radially organized nervous system with a processing centre for each of its eight tentacles. Yet, although this might suggest that each tentacle has its own centre of consciousness, it remains just one animal, with one mouth to feed, and one life to lose, and it behaves as if it is centrally controlled. Its capacity for a range of intelligent …

What We Don't Know About Cephalopods And How To Define It, Catia Correia Caeiro

Animal Sentience

Despite the reputation of octopuses as intelligent animals, their cognitive abilities seem to be mostly unknown. This should be the starting point of a long process of scientific enquiry about these taxa, which must include discussions on operational definitions first and foremost. Discussing octopus mind might prove fruitless without more basic concepts. Some approaches are suggested here.

Habitat Characteristics And Nesting Ecology Of Golden Eagles In Arizona, Michele J. Losee

Antioch University Dissertations & Theses

Golden Eagles (Aquila chrysaetos) have a broad range globally and in general are well-studied. However, Arizona’s Golden Eagle population remained essentially unstudied until 2011, when Arizona Game and Fish Department (AZGFD) began nest surveys for cliff nesting Golden Eagles throughout the state. As a result of this data collection, the natural history of Arizona’s Golden Eagles is finally revealing itself. This dissertation outlined a reliable description of their nesting phenology that provides a framework for timing surveys and a baseline to monitor the effects of climate change on Golden Eagles. The mean date for egg-laying was February 14 and pairs …

Home Range, Habitat Use And Thermal Ecology Of The Florida Box Turtle (Terrapene Bauri) On An Anthropogenic Island In Southwestern Florida, Christina Demetrio

Antioch University Dissertations & Theses

Limited information is available on the ecology of Terrapene bauri (Florida Box Turtle) in mangrove ecosystems. Radio-telemetry and iButton data loggers were used to study the home range, habitat use, and thermal ecology of ten Florida Box Turtles on an anthropogenic island in the mangrove-dominated region of southwestern Florida. The effects of weather variables on movement and activity were also examined. Home range analysis using Minimum Convex Polygons (MCP) and Kernel Density Estimates (KDE) determined an average home range size of 0.81 ha (MCP) and 2.32 ha (95% KDE). Box Turtles moved an average distance of 6.3 m per day …

Combining The Iad And Ses Frameworks, Daniel H. Cole, Graham Epstein, Michael D. Mcginnis

Articles by Maurer Faculty

No abstract provided.

Population Health Of Spotted Salamanders (Ambystoma Maculatum) In Created Vernal Pools: An Integrative Approach, Alice R. Millikin

Graduate Theses, Dissertations, and Problem Reports (ETD)

Habitat creation is an important tool for conservation to counteract habitat loss and degradation. Vernal pools are susceptible to destruction due to limited detection, protection, and regulation. These wetlands provide fishless breeding habitat for many amphibian species including spotted salamanders (Ambystoma maculatum) in eastern North America. Determining whether created vernal pool habitat is successful is often determined by demographic data of colonizing populations. I suggest that hormone levels, population genetics, and disease prevalence can improve our understanding of population health in created habitat. The goal of this dissertation was to assess the health of spotted salamander larvae in …

The Effects Of Warming On Carbon And Microbial Community Wetland Dynamics At Turnbull National Wildlife Refuge, Washington, Marissa A. Medina

EWU Masters Thesis Collection

Wetlands are biodiverse ecosystems that play a key role in the biogeochemical cycling of carbon. In the face of global warming, wetland hydroperiods could shift causing changes in their functionality. My field experiment surveyed 3 plots within 12 wetlands of each hydroperiod class (i.e. 12 permanent, 12 semi-permanent, 12 ephemeral). This survey was paired with a warming experiment by placing open top warming chambers on half of each wetland type. In chapter one, I compared carbon dynamics across hydroperiods and treatment by measuring soil organic carbon (in Summer 2018) and effluxes of carbon dioxide and methane (in Summer 2018, Fall …

Patterns Of Diatom Diversity Correlate With Dissolved Trace Metal Concentrations And Longitudinal Position In The Notheast Pacific Coastal Offshore Transition Zone, P. Dreux Chappell, E. Virginia Armbrust, Katherine A. Barbeau, Randelle M. Bundy, Jagruti Vedamati, Bethany D. Jenkins

OES Faculty Publications

Diatoms are important primary producers in the northeast Pacific Ocean, with their productivity closely linked to pulses of trace elements in the western high nitrate, low chlorophyll (HNLC) region of the oceanographic time series transect 'Line P.' Recently, the coastal-HNLC transition zone of the Line P transect was identified as a hotspot of phytoplankton productivity, potentially controlled by a combination of trace element and macronutrient concentrations. Here we describe diatom community composition in the eastern Line P transect, including the coastal- HNLC transition zone, with a method using high-throughput sequencing of diatom 18S gene amplicons. We identified significant correlations between …

Spatial Structuring And Life History Connectivity Of Antarctic Silverfish Along The Southern Continental Shelf Of The Weddell Sea, Jilda Alicia Caccavo, Julian R. Ashford, Svenja Ryan, Chiara Papetti, Michael Schröder, Lorenzo Zane

OES Faculty Publications

A multi-disciplinary approach was employed to examine a physical-biological population hypothesis for a critical forage species, the Antarctic silverfish Pleuragramma antarctica. Caccavo et al. (2018; Sci Rep 8:17856) had shown strong gene flow along the westward Antarctic Slope Current, in addition to spatially recurring length modes that provided evidence for episodic connectivity. In this paper, otolith nucleus chemistry from a subset of fish collected in the southern Weddell Sea as part of a hydrographic survey of the Filchner Trough system was used to test between connectivity scenarios. Nucleus chemistry, which reflects environmental exposure during early life, showed significant …

Inferring Food Web Structure To Identify Seasonal And Longitudinal Patterns In Ogeechee River Invertebrate Communities, Julien Marc Buchbinder

College of Graduate Studies: Theses & Dissertations

Understanding how the structure and function of aquatic communities vary across space and time is essential for proper management of freshwater ecosystems. Current management relies on rapid biomonitoring using metrics of community structure, but metrics that incorporate ecosystem processes and functions are only just beginning to see use in assessment and management. Food webs inferred from known species interactions have been proposed as a method of incorporating function into bioassessment without expending extra effort or sacrificing the cost-effectiveness of current monitoring schemes. To apply food webs in biomonitoring, it is first necessary to understand how communities and food webs vary …

Effects Of Climate Variability: A Long-Term Perspective On Leaf Litter Processing In The Ogeechee River, Jose A. Sanchez

College of Graduate Studies: Theses & Dissertations

The Intergovernmental Panel for Climate Change (IPCC) predicts a rise in temperatures and changes to precipitation patterns for the 21^st century. These changes are expected to lead to a higher frequency of extreme events such as drought and floods which lead to the alteration of the hydrology, communities, and processes of freshwater ecosystems. Leaf litter decomposition in stream ecosystems is an important component of the energy and nutrient cycle representing a food source for aquatic organisms. This has made it a tool for assessing long term responses to disturbance due to changes in the assemblage of macroinvertebrates that …

Impact Of Seasonal And Host-Related Factors On The Intestinal Microbiome And Cestode Community Of Sorex Cinereus And Sorex Monticola, Katelyn D. Cranmer

College of Graduate Studies: Theses & Dissertations

The intestinal microbiome of mammals plays a significant role in host health and response to environmental stimuli and can include both beneficial native bacteria as well as parasitic worms. In this study, I examined the intestinal cestode and bacterial communities of two closely related species of shrew, Sorex monticola and Sorex cinereus, over a six month period in 2016. Specimens were collected approximately every three weeks from May to October from the Sangre de Cristo Mountains in Cowles, New Mexico. A total of 79 shrews were prepared with the gastrointestinal tracts removed and flash-frozen in liquid nitrogen. An additional …

The Role Of Local Adaptation On Biting Performance In Trinidadian Guppies, Hannah E. Cohen

College of Graduate Studies: Theses & Dissertations

Divergent selection pressures in populations that occupy different environments can result in phenotypic differentiation in traits that provide a local fitness advantage. Trinidadian guppy (Poecilia reticulata) populations are separated by physical barriers such as waterfalls which result in repeated shifts in selective pressures from predator avoidance in high predation environments towards resource competition in low predation environments. Such shifts in selection pressures have previously shown that a range of locally adapted morphological and behavioral traits are changed. However, the role of local adaptation on biting behaviors remains unclear. I analyzed morphological differences such as body length, jaw position, …

Happy Or Hangry Families: Does Kinship Mediate Cooperation And Cannibalism In Drosophila Melanogaster Larvae?, Lucas Khodaei

Theses and Dissertations (Comprehensive)

The fruit fly Drosophila melanogaster has a long history as a research model for studies on behaviour and group dynamics. When individuals are grouped in an environment and resources decrease, then they may behave co-operatively with one another or antagonistically compete. Hamilton’s Law states that if the benefit of helping a related individual out-weighs the cost to its direct fitness, then the individual’s indirect fitness will increase when they help their kin compared to helping an unrelated stranger. Yet it is unknown whether kinship mediates larval behaviour to encourage co-operation and/or lessen antagonistic behaviours between consanguineous individuals. In this thesis …

Competition Or Facilitation: Examination Of Interactions Between Endangered Sida Hermaphrodita And Invasive Phragmites Australis, Samantha N. Mulholland

Theses and Dissertations (Comprehensive)

Virginia Mallow (Sida hermaphrodita) is a perennial herb of the Malvaceae family that is native to riparian habitats in northeastern North America. Throughout most of its geographical distribution however, it is considered threatened and only two populations are known from Canada. The biology and ecology of S. hermaphrodita are still poorly understood and although few studies have been performed to determine the factors that contribute to the species rarity, it is considered threatened potentially due to the loss of habitat caused by exotic European Common reed (Phragmites australis subsp. australis) invasion. Allelopathic and phytotoxic conditioning of …

Shizen Nōhō: Restoring The Relationship Between Food, Nature, And People In Japan, Katharine Graham

Scripps Senior Theses

In Japan’s postwar era, agriculture has become highly industrialized, involving heavy machinery, chemical fertilizers, and pesticides, all in the name of “progress.” Through employing such practices, humans have attempted to improve upon nature’s way of doing things, and in turn have degraded the soil’s fertility, natural ecosystems, and human health. In response to this, Shizen Nōhō has emerged in Japan as an alternative way of cultivating food. Shizen Nōhō practitioners challenge the notion that we need chemical fertilizers, pesticides, and machinery to farm successfully. Rather, they advocate for a way of growing food that functions seamlessly with natural ecosystems. This …

Modeling Organic Carbon Accumulation Rates And Residence Times In Coastal Vegetated Ecosystems, E. Fay Belshe, Jose Sanjuan, Carmen Leiva-Dueñas, Nerea Piñeiro-Juncal, Oscar Serrano, Paul Lavery, Miguel Angel Mateo

Research outputs 2014 to 2021

Coastal vegetated “blue carbon” ecosystems can store large quantities of organic carbon (OC) within their soils; however, the importance of these sinks for climate change mitigation depends on the OC accumulation rate (CAR) and residence time. Here we evaluate how two modeling approaches, a Bayesian age-depth model alone or in combination with a two-pool OC model, aid in our understanding of the time lines of OC within seagrass soils. Fitting these models to data from Posidonia oceanica soil cores, we show that age-depth models provided reasonable CAR estimates but resulted in a 22% higher estimation of OC burial rates when …

Effects Of Disturbance On Jack Pine- (Pinus Banksiana Lamb.) Dominated Ecosystems In Northern Lower Michigan: Forest Management, Wildfires, And Climate Change, Madelyn Tucker

Wayne State University Dissertations

Jack pine-dominated forests in northern Lower Michigan were historically characterized by a frequent, severe fire regime that produced a patchwork of dense stands interspersed with open barrens. This structure also provided breeding habitat for Kirtland’s warblers, a migratory songbird. Fire suppression management caused forests to become older and reduced Kirtland’s warbler habitat, resulting in severe population losses. Kirtland’s warblers were designated as endangered, and subsequent habitat management has produced homogeneous forests that lack historical structural and compositional diversity. Moreover, future climate may increasingly complicate forest and fire management moving forward. In a landscape defined by disturbance, novel disturbances or changes …

Production And Ecosystem Structure In Cold‐Core Vs. Warm‐Core Eddies: Implications For The Zooplankton Isoscape And Rock Lobster Larvae, Anya M. Waite, Eric Raes, Lynnath E. Beckley, Peter A. Thompson, David Griffin, Megan Saunders, Christin Sawstrom, Richard O'Rorke, Miao Wang, Jason P. Landrum, Andrew Jeffs

Research outputs 2014 to 2021

Anticyclonic (warm-core) mesoscale eddies (WCEs) in the Eastern Indian Ocean carry higher surface chlorophyll signatures than cyclonic (cold-core) eddies (CCEs). Paradoxically, WCEs host rock lobster larvae (phyllosomas) with lower lipid stores and protein reserves than phyllosomas in CCEs, suggesting a poorer nutritional status. We assess primary productivity and zooplankton isotopic data from eight eddies across four research voyages (2003–2011) to determine how this contradiction might occur. We find that WCEs and CCEs are equally productive per unit chlorophyll a, but depth-integrated primary production (PP) is greater in eddies with shallower mixed layers (MLs), especially in CCEs. MLs tend to be …

Projected Sea Level Rise And The Conservation Ecology Of The Micronesian Megapode (Megapodius Laperouse Senex) In Palau, Micronesia, Paul M. Radley

Theses: Doctorates and Masters

Climate change has been a subject of numerous studies. While findings suggest that most biological taxa will be affected by its manifestations, aspects of a species life history may increase its susceptibility to climate change. Given their reliance on environmental sources of heat to incubate their eggs, I examined the vulnerability to climate change of the avian family Megapodiidae. I also assessed habitat use, susceptibility to sea level rise, and the effect of introduced rats and tourist presence, as added stressors to climate change, on the Micronesian Megapode (Megapodius

laperouse senex) in Palau.

Based on available literature, I …

Causes And Possible Consequences Of Hybridisation In Angelfishes At Christmas Island, Federico Vitelli

Theses: Doctorates and Masters

The angelfishes (family Pomacanthidae) have the greatest proportion (~30%) of hybridising species, compared to other families of reef fishes, with 26 species implicated in hybridisation. However, very little is known about hybridisation in angelfish, especially in terms of fitness of the hybrids and possible ecological consequences. Hybrids between three species (C. flavissima, C. eibli and C. vroliki) in the genus Centropyge have previously been reported from Christmas island, where these have been observed in heterospecific harems and interbreeding. This provides the unique opportunity to examine the breakdown in assortative mating in marine fishes. The broad aim of this …

Seedling Xylem Anatomy Of Two Banksia Species Relative To Availability Of Groundwater, Melissa Karlinski

Theses: Doctorates and Masters

Fluctuating environmental conditions place plants at risk of mortality if they cannot adapt, particularly to warmer temperatures and drier environments. Plants are known to modify their morphology, physiology and anatomy to thrive under these conditions, and xylem anatomy and hydraulic architecture are common traits studied to understand plant adaptations and responses to changeable water availability. However, little is known about the changes to the hydraulic architecture of groundwater dependent plants during their early establishment in water-limited environments. By exposing young seedlings of two Banksia species to contrasting groundwater availability treatments in a glasshouse experiment, it was possible to analyse the …

Digital Repositories In Ecology And Environment: An Analytical Study, Midhat Mehraj, Ikhlaq Ur Rehman, Shohar Bano

Library Philosophy and Practice (e-journal)

The present study aims to identify the status of Open Access Repositories (OARs) in the field of Ecology and Environment. The data was collected from the Directory of Open Access Repositories (OpenDOAR). Data collected was analysed on different parameters such as geographical distribution, software usage, content type, repository type and language diversity. As of now OpenDOAR holds 176 repositories in the field of Ecology and Environment. The findings further reveal that the maximum number of repositories belong to the USA accounting for 18(10.2%). Also, the maximum number of repositories are institutional accounting for 134(76%).

Ecological Consequences Of Sea Star Wasting Disease: Non-Consumptive Effects And Trait-Mediated Indirect Interactions From Pisaster Ochraceus, Timothy Ian Mcclure

Cal Poly Humboldt theses and projects

Consumptive effects (CEs) of predators are an important factor in structuring biological communities, but further work is needed to understand how the interaction between spatial and temporal differences in predator density affects non-consumptive effects (NCEs) on prey. NCEs can cause indirect effects on food resources, known as trait-mediated indirect interactions (TMIIs), and thus can also affect community structure. However, few studies have considered the relationships between spatial and temporal predator density variation and the strength of NCEs and TMIIs in the natural environment. The ochre star Pisaster ochraceus is common predator of the herbivorous black turban snail Tegula funebralis, imposing …

Freshwater And Marine Survival Of Coho Salmon (Oncorhynchus Kisutch) As A Function Of Juvenile Life History, Grace Katherine Ghrist

Cal Poly Humboldt theses and projects

Juvenile Coho Salmon (Oncorhynchus kisutch) in coastal California streams exhibit various life history strategies during their freshwater development. One strategy of interest to managers and conservationists is the early migrant. Juvenile early migrants emigrate from natal habitat into lower parts of the watershed or estuary during their first fall or winter, where they rear before migration to the ocean. By contrast, the more prevalent spring migrant resides in natal reaches over the winter and migrates directly to the ocean the following spring. Salmon monitoring programs generally estimate juvenile production and demographic rates using only spring migrants, and these …

Effects Of Longline Oyster Aquaculture On Benthic Invertebrate Communities In Humboldt Bay, California, Hannah C. Coe

Cal Poly Humboldt theses and projects

Oyster aquaculture has had a commercial presence in Humboldt Bay for nearly 60 years and has experienced changes in scope and methodology as the industry has grown. The traditional method of bottom-culture oyster beds has been phased out, with longline oyster aquaculture becoming the common replacement. However, this transition has preceded much of the research regarding potential impacts to the broader ecosystem. The benthic invertebrate community of Humboldt Bay is a vital food source for many commercially important fishes, as well as for the many shorebirds that utilize Humboldt Bay. The importance of the invertebrate community to the ecosystem highlights …