Digital Commons Network^™

Multiscale Collection And Analysis Of Submerged Aquatic Vegetation Spectral Profiles For Eurasian Watermilfoil Detection, Colin Brooks, Amanda Grimm, Amy Marcarelli, Richard Dobson

Michigan Tech Publications, Part 1

The ability to differentiate a non-native aquatic plant, Myriophyllum spicatum (Eurasian watermilfoil or EWM), from other submerged aquatic vegetation (SAV) using spectral data collected at multiple scales was investigated as a precursor to mapping of EWM. Spectral data were collected using spectroradiometers for SAV taken out of the water, from the side of a boat directly over areas of SAV and from a lightweight portable radiometer system flown from an unmanned aerial system (UAS). EWM was spectrally different from other SAV when using 651 spectral bands collected in ultraviolet to near-infrared range of 350 to 1000 nm but does not …

The Finch Effect: Evolutionary Metaphors And Illiberal Democracy In Central And Eastern Europe, Abigail Woodfield

Claremont-UC Undergraduate Research Conference on the European Union

In recent years, several states in Central and Eastern Europe have seen democratic digression. Such illiberal resurgences came as a surprise to the many political scientists who assumed that the future of these states was democratic. Indeed, after the fall of the Soviet Union, the world largely regarded liberal democracy as the predominant system of government. The future seemed bright, and it was tempting to understand that future in evolutionary terms—just as humans evolved under natural selection to become the dominant species, democracy had survived a similar competition and defeated all other systems of government to become the dominant regime. …

The Missing Angle: Ecosystem Consequences Of Phenological Mismatch, Karen H. Beard, Katharine C. Kelsey, A. Joshua Leffler, Jeffrey M. Welker

Ecology Center Publications

Climate change leads to unequal shifts in the phenology of interacting species, such as consumers and their resources, leading to potential phenological mismatches. While studies have investigated how phenological mismatch affects wild populations, we still lack studies and a framework for investigating how phenological mismatch affects ecosystems, particularly nutrient cycling.

Design And Implementation Of Degenerate Qpcr/Qrt-Pcr Primers To Detect Microbial Nitrogen Metabolism In Wastewater And Wastewater-Related Samples, Ryan F. Keeley

USF Tampa Graduate Theses and Dissertations

Nitrogen cycling processes can be tracked using quantitative Polymerase Chain Reaction (qPCR) to determine the presence and qReverse Transcriptase-PCR (qRT-PCR) to determine expression of key genes, or ‘biological markers’, for nitrogen metabolism. Nitrification is catalyzed in part, by two enzymes: ammonia monooxygenase (AMO; NH3 NH2OH) and nitrite oxidoreductase (NXR; NO2- NO3-). For denitrification, four enzymes act sequentially: nitrate reductase (NAR/NAP; NO3- NO2-), nitrite reductase (NIR; NO2- NO), nitric oxide reductase (NOR; NO  N2O), and nitrous oxide reductase (NOS; N2O  N2). A principle of wastewater treatment (WWT) is to remove excess nitrogen by taking advantage of natural nitrogen cycling …

Phylogenetic Trees And Networks Can Serve As Powerful And Complementary Approaches For Analysis Of Genomic Data, Christopher Blair, Cécile Ané

Publications and Research

Genomic data have had a profound impact on nearly every biological discipline. In systematics and phylogenetics, the thousands of loci that are now being sequenced can be analyzed under the multispecies coalescent model (MSC) to explicitly account for gene tree discordance due to incomplete lineage sorting (ILS). However, the MSC assumes no gene flow post divergence, calling for additional methods that can accommodate this limitation. Explicit phylogenetic network methods have emerged, which can simultaneously account for ILS and gene flow by representing evolutionary history as a directed acyclic graph. In this point-of-view we highlight some of the strengths and limitations …

Quantifying Impacts Of Climate Change On Species Interactions While Fostering Undergraduate Research Experiences Using The Monarch (Danaus Plexippus)- Milkweed (Asclepias Sp.) System, Matthew J. Faldyn

LSU Doctoral Dissertations

Species interactions, specifically plant-insect interactions, are ubiquitous worldwide. Climate change will alter species interactions by affecting abiotic conditions, affecting species phenologies, interaction strengths, and physiological development. However, climate change impacts are often studied using individual species, with limited consideration quantifying the direct and indirect impacts of climate change species interactions. Using lab, field, and greenhouse experiments, I investigated how climate change will directly and indirectly affect species interactions while also fostering undergraduate research experiences using the monarch butterfly (Danaus plexippus)- milkweed (Asclepias sp.) system.

In North America, a widely planted, invasive milkweed species, Asclepias curassavica, negatively …

Diffuse Light And Wetting Differentially Affect Tropical Tree Leaf Photosynthesis, Z. Carter Berry, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

‐Most ecosystems experience frequent cloud cover resulting in light that is predominantly diffuse rather than direct. Moreover, these cloudy conditions are often accompanied by rain that results in wet leaf surfaces. Despite this, our understanding of photosynthesis is built upon measurements made on dry leaves experiencing direct light.

‐Using a modified gas exchange setup, we measured the effects of diffuse light and leaf wetting on photosynthesis in canopy species from a tropical montane cloud forest.

‐We demonstrate significant variation in species‐level response to light quality independent of light intensity. Some species demonstrated 100% higher rates of photosynthesis in diffuse light …

Uncovering The True Diversity Of Chanterelles In Indiana, Jairus Chittenden

The Journal of Purdue Undergraduate Research

No abstract provided.

Comparison Of The Efficacy Of Four Drug Combinations For Immobilization Of Wild Pigs, Christine K. Ellis, Morgan E. Wehtje, Lisa L. Wolfe, Peregrine L. Wolff, Clayton D. Hilton, Mark C. Fisher, Shari Green, Michael P. Glow, Joeseph M. Halseth, Michael J. Lavelle, Nathan P. Snow, Eric H. Vannatta, Jack C. Rhyan, Kurt C. Vercauteren, William R. Lance, Pauline Nol

United States Department of Agriculture Wildlife Services: Staff Publications

Field immobilization of native or invasive wild pigs (Sus scrofa) is challenging. Drug combinations commonly used often result in unsatisfactory immobilization, poor recovery, and adverse side effects, leading to unsafe handling conditions for both animals and humans. We compared four chemical immobilization combinations, medetomidine–midazolam–butorphanol (MMB), butorphanol–azaperone–medetomidine (BAM™), nalbuphine–medetomidine–azaperone (NalMed-A), and tiletamine– zolazepam–xylazine (TZX), to determine which drug combinations might provide better chemical immobilization of wild pigs. We achieved adequate immobilization with no post-recovery morbidity withMMB. Adequate immobilization was achieved with BAM™; however, we observed post-recovery morbidity. Both MMB and BAM™ produced more optimal results relative to body temperature, recovery, and …

A Comparison Of Individual Learning And Social Learning In Zebrafish Through An Ethorobotics Approach, Yanpeng Yang, Romain J. G. Clément, Stefano Ghirlanda, Maurizio Porfiri

Publications and Research

Social learning is ubiquitous across the animal kingdom, where animals learn from group members about predators, foraging strategies, and so on. Despite its prevalence and adaptive benefits, our understanding of social learning is far from complete. Here, we study observational learning in zebrafish, a popular animal model in neuroscience. Toward fine control of experimental variables and high consistency across trials, we developed a novel robotics-based experimental test paradigm, in which a robotic replica demonstrated to live subjects the correct door to join a group of conspecifics. We performed two experimental conditions. In the individual training condition, subjects learned the correct …

Vision In An Abundant North American Bird: The Red-Winged Blackbird, Esteban Fernández-Juricic, Patrice E. Baumhardt, Luke P. Tyrrell, Amanda Elmore, Shelagh T. Deliberto, Scott J. Werner

United States Department of Agriculture Wildlife Services: Staff Publications

Avian vision is fundamentally different from human vision; however, even within birds there are substantial between species differences in visual perception in terms of visual acuity, visual coverage, and color vision. However, there are not many species that have all these visual traits described, which can constrain our ability to study the evolution of visual systems in birds. To start addressing this gap, we characterized multiple traits of the visual system (visual coverage, visual acuity, centers of acute vision, and color vision) of the Red-winged Blackbird (Agelaius phoeniceus), one of the most abundant and studied birds in North America. We …

A New Species Of Catalinia Soleglad Et Al., 2017 (Scorpiones: Vaejovidae) From Southern California, Usa, Rolando Teruel, Brandon Myers

Euscorpius

Herein we describe a new species of the vaejovid scorpion genus Catalinia Soleglad, Ayrey, Graham & Fet, 2017. It was collected in a single locality of the northwestern foothills of the Santa Ana Mountains. It is most closely related to both Catalinia andreas (Gertsch & Soleglad, 1972) and C. minima (Kraepelin, 1911), but is clearly distinguished by tegumentary sculpture, morphometric ratios and pectinal tooth counts. The new species is described and illustrated in detail, with some ecological data included; moreover, a minor correction is introduced to the diagnosis of the genus.

Does A Carbonatite Deposit Influence Its Surrounding Ecosystem?, James M.C. Jones, Elizabeth A. Webb, Michael D.J. Lynch, Trevor C. Charles, Pedro M. Antunes, Frédérique C. Guinel

Biology Faculty Publications

Carbonatites are unusual alkaline rocks with diverse compositions. Although previous work has characterized the effects these rocks have on soils and plants, little is known about their impacts on local ecosystems. Using a deposit within the Great Lakes–St. Lawrence forest in northern Ontario, Canada, we investigated the effect of a carbonatite on soil chemistry and on the structure of plant and soil microbial communities. This was done using a vegetation survey conducted above and around the deposit, with corresponding soil samples collected for determining soil nutrient composition and for assessing microbial community structure using 16S/ITS Illumina Mi-Seq sequencing. In some …

Factors Affecting Waterfowl Diversity At Wetland Area, Punjab (Pakistan), Zahid Bhatti, Fakhra Nazir, Inayatullah Malik

Journal of Bioresource Management

Different wetlands are being selected through WWF to improve their conditions and to create awareness about their importance in public of Pakistan. The study will help in providing sound basis for the future conservation activities and management of waterfowl population, on sounder footing. The study was conducted at Marala wetlands from October 2000 to September 2001. The State of Jammu and Kashmir lies in the north. Three rivers, i.e., Tawi, Chenab and Manawar Tawi, coming from Jammu and Kashmir, flow into Game Reserve and meet to enter the Head Marala water storage reservoir. At river Jammu Tawi, 58 species of …

Phytological Study Of Freshwater Wetland Ecosystem Of Bajwat Area, Zahid Bhatti, Asad Ghufran, Sher Wali Khan

Journal of Bioresource Management

Freshwater wetlands are individual ecosystems that support a variety of wildlife, vegetation and microscopic life. The type of plants that exist in these areas describe the physico-chemical characteristics of their locality and vice-versa. This study was carried out at Marala wetlands in Bajwat Game Reserve. The study found 39 species of higher plants in the areas of the wetland and its associated terrain. The total species were arranged into 5 vegetation types, named on the basis of the dominant plant species, with their own composition of the species and present in different habitat conditions. The vegetative community Phragmites karka constituted …

A Comparison Of Drone Imagery And Ground-Based Methods For Estimating The Extent Of Habitat Destruction By Lesser Snow Geese (Anser Caerulescens Caerulescens) In La Pérouse Bay, Andrew Barnas, Brian J. Darby, Gregory S. Vandeberg, Robert F. Rockwell, Susan N. Ellis-Felege

Biology Faculty Publications

Lesser snow goose (Anser caerulescens caerulescens) populations have dramatically altered vegetation communities through increased foraging pressure. In remote regions, regular habitat assessments are logistically challenging and time consuming. Drones are increasingly being used by ecologists to conduct habitat assessments, but reliance on georeferenced data as ground truth may not always be feasible. We estimated goose habitat degradation using photointerpretation of drone imagery and compared estimates to those made with ground-based linear transects. In July 2016, we surveyed five study plots in La Pérouse Bay, Manitoba, to evaluate the effectiveness of a fixed-wing drone with simple Red Green Blue …

Low Secondary Risks For Captive Coyotes From A Sodium Nitrite Toxic Bait For Invasive Wild Pigs, Nathan P. Snow, Katherine E. Horak, Simon T. Humphrys, Linton D. Staples, David G. Hewitt, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

An acute toxic bait is being developed to deliver micro‐encapsulated sodium nitrite (SN) to stimulate severe methemoglobinemia and humane death for invasive wild pigs (Sus scrofa), thereby providing a new tool for reducing their populations. During April 2016, we evaluated sensitivity to SN and outcomes of secondary consumption in the ubiquitous mammalian scavenger, coyote (Canis latrans), to determine secondary risks of consuming carcasses of wild pigs that died from consuming the SN toxic bait. At the National Wildlife Research Center in Fort Collins, Colorado, USA, we first evaluated whether coyotes fed carcasses of domestic pigs killed by consumption of SN …

Comparison Of Play Frequency In Four Sympatric Monkey Species In Kibale National Park, Uganda, Sara G. Lucci

Theses and Dissertations

This study describes play in red colobus (Procolobus rufomitratus), grey-cheeked mangabeys (Lophocebus albigena), black-and-white colobus (Colobus guereza), and redtail monkeys (Cercopithecus ascanius) to test Instinct-Practice Theory. Solitary locomotor play was different among the species. Rough-and-tumble play was different between male and female redtail monkeys. These results partially support Instinct-Practice Theory.

Sudden Aspen Decline: A Review Of Pattern And Process In A Changing Climate, Jack A. Singer, Rob Turnbull, Mark Foster, Charles Bettigole, Brent R. Frey, Michelle C. Downey, Kristofer R. Covey, Mark S. Ashton

Aspen Bibliography

The American quaking aspen (Populus tremuloides Michx.) and its close relative, the Eurasian quaking aspen (Populus tremula L.), cover a realm that is perhaps the most expansive of all tree species in the world. In North America, sudden aspen decline (SAD) is a growing concern that marks the rapid decline of quaking aspen trees leading to mortality at the stand and landscape scale. Research suggests that drought and water stress are the primary causes of SAD. Predisposing factors (age, structure, and landscape position), as well as associated stressors (i.e., pests and pathogens), have been linked to mortality in affected stands. …

Integrated Pest Management In The Academic Small Greenhouse Setting: A Case Study Using Solanum Spp. (Solanaceae)., Daniel S. Hayes, Ingrid E. Jordon-Thaden, Jason T. Cantley, Angela J. Mcdonnell, Christopher T. Martine

Faculty Journal Articles

Premise

Botanical faculty and staff at academic institutions are often tasked with establishing and/or caring for plant collections held in small greenhouse facilities. Once plants are in place, an especially acute challenge is managing plant pest/pathogen populations. Integrated pest management (IPM) approaches are an excellent option, but few examples exist in the literature of successful programs that have been developed in academic small greenhouse settings.

Methods and Results

Over several years, we developed an IPM program for two small research greenhouses on the campus of a primarily undergraduate institution where hundreds of plants have been grown for studies in the …

What We (Don’T) Know About Global Plant Diversity, William K. Cornwell, William D. Pearse, Rhiannon L. Dalrymple, Amy E. Zanne

Ecology Center Publications

The era of big biodiversity data has led to rapid, exciting advances in the theoretical and applied biological, ecological and conservation sciences. While large genetic, geographic and trait databases are available, these are neither complete nor random samples of the globe. Gaps and biases in these databases reduce our inferential and predictive power, and this incompleteness is even more worrisome because we are ignorant of both its kind and magnitude. We performed a comprehensive examination of the taxonomic and spatial sampling in the most complete current databases for plant genes, locations and functional traits. To do this, we downloaded data …

The Influence Of Signaling Conspecific And Heterospecific Neighbors On Eavesdropper Pressure, Paula A. Trillo, Christopher S. Benson, Michael S. Caldwell, Tiffany L. Lam, Oliver H. Pickering, David M. Logue

Biology Faculty Publications

The study of tradeoffs between the attraction of mates and the attraction of eavesdropping predators and parasites has generally focused on a single species of prey, signaling in isolation. In nature, however, animals often signal from mixed-species aggregations, where interactions with heterospecific group members may be an important mechanism modulating tradeoffs between sexual and natural selection, and thus driving signal evolution. Although studies have shown that conspecific signalers can influence eavesdropper pressure on mating signals, the effects of signaling heterospecifics on eavesdropper pressure, and on the balance between natural and sexual selection, are likely to be different. Here, we review …

The Fate Of Atmospherically Deposited Mercury In Mountain Lake Food Webs, And Implications For Fisheries Management, Ariana Martos Chiapella

Dissertations and Theses

Mountain lakes are an iconic feature of the landscape in the Mountain West. They hold significant ecological and cultural value, and are important sentinels of environmental change. Despite their pristine image, these remote waterbodies are subjected to numerous anthropogenic stressors. Mountain lakes are naturally fishless systems, but historical fish stocking has led to major changes in mountain lake food web structure, including declines of resident amphibians, large-bodied zooplankton, and emergent insect populations. Atmospherically deposited contaminants, such as mercury, can accumulate in mountain lake food webs, leading to relatively high levels in the fish relative to the water. Managing for these …

Turtles Of The Early Pleistocene Santa Fe River 1b Locality, Dennis Parmley, Robert Chandler, Linda Chandler

Georgia Journal of Science

The early Pleistocene (ca. 2.588–1.806 Ma) Santa Fe River 1B fossil site (SF1B) of Gilchrist County, Florida has yielded turtle fossils representing nine genera and at least 10 species. Of these, at least six genera are aquatic turtles (Macrochelys and/or Chelydra, Apalone, Trachemys, Pseudemys, Sternotherus, and Kinosternon) and three are terrestrial (Hesperotestudo, Gopherus, and Terrapene). Hesperotestudo and an undescribed cf. Trachemys are the only extinct turtles identified in the paleoherpetofauna. Overall, the generic composition of the turtle fauna is predominantly modern and indicative of the southeastern United States today.

A New “Vorhiesi” Group Species Of Vaejovis From The Galiuro Mountains, Southern Arizona (Scorpiones: Vaejovidae), Richard F. Ayrey, Brandon Myers

Euscorpius

A new scorpion species, Vaejovis stetsoni sp. n. is described from Galiuro Mountains, Graham County, Arizona. This is the smallest species of the “vorhiesi” group discovered so far, most similar to V. brysoni Ayrey & Webber. The pedipalp fixed finger has five ID denticles and the movable finger has six, like in most other southern Arizona Vaejovis. The most unique characteristics of this species are its small size (18.35 mm) and a large subaculear tubercle.

Scorpions Of Sri Lanka (Arachnida: Scorpiones). Part Iii. Heterometrus Yaleensis Sp. N. (Scorpionidae), František Kovařík, Kithsiri B. Ranawana, V. A. Sanjeewa Jayarathne, David Hoferek, František Šťáhlavský

Euscorpius

Heterometrus yaleensis sp. n. from Sri Lanka, Southern Province, Yale National Park is described and compared with other species of the genus. The presence of a unique dorsointernal carina on the pedipalp chela distinguishes H. yaleensis sp. n. from all other Heterometrus species. Additional information is provided on the taxonomy and distribution of the genus Heterometrus in Sri Lanka, fully complemented with color photos of specimens of both sexes of the new species, as well as of their habitat. In addition to external morphology and hemispermatophore, we also describe the karyotype of H. yaleensis sp. n. (2n=99).

Impacts Of Climate And Insect Herbivory On Productivity And Physiology Of Trembling Aspen (Populus Tremuloides) In Alaskan Boreal Forests, Melissa A. Boyd, Logan T. Berner, Patricia Doak, Scott J. Goetz, Brendan M. Rogers, Diane Wagner, Xanthe J. Walker, Michelle C. Mack

Aspen Bibliography

Climate change is impacting forested ecosystems worldwide, particularly in the Northern Hemisphere where warming has increased at a faster rate than the rest of the globe. As climate warms, trembling aspen (Populus tremuloides) is expected to become more successful in northern boreal forests because of its current presence in drier areas of North America. However, large-scale productivity decline of aspen has recently been documented throughout the United States and Canada as a result of drought and insect outbreaks. We used tree ring measurements (basal area increment (BAI) and stable carbon isotopes (δ 13C)) and remote sensing indices …

Fucus Distichus: Investigating Humidity And Temperature Between Tides, Jason Thomas, Andrew Chang, Julia Blum, Chela Zabin

STAR Program Research Presentations

Environmental elements such as changing rapidly changing temperature, prolonged periods of low to no water exposure, desiccation, predation and increased wave action can influence the diversity of microhabitats that inhabit the littoral zones. When making observations of various shorelines, specifically the physical conditions of the surrounding marine vegetation (i.e. Fucus distichus), an inquiry is made as to the role of Fucus in the amelioration of stressors on the marine habitat during low tide (MLLW), however, due to time considerations, temperature and humidity are the focus of this study. Using temperature and humidity probes, monitoring data shows that Fucus provides …

Abundance And Community Composition Of Invasive Intertidal Watersipora On The San Francisco Bay Area Outer Coast, Kevin Myron, Meredtyh Duncan, Jaden Stone, C. Sarah Cohen

STAR Program Research Presentations

Invasive species can lead to serious ecological changes. The San Francisco Bay area is one of the most invaded areas in the world due to the commercial shipping industry and recreational water vessels. While the intertidal is not widely invaded, the harbors and docks are. One exception to this is the invasive, colonial filter-feeding bryozoan Watersipora, which has been found at various rocky outer coast sites. Further investigation into how the sites are invaded by this organism and their impact on native species must be carried out. In this project, at four intertidal sites around the SF Bay outflow, we …

A Moral Panic Over Cats, William S. Lynn, Francisco J. Santiago-Ávila, Joann Lindenmayer, John Hadidian, Arian D. Wallach, Barbara J. King

Stray and Feral Animal Populations Collection

Some conservationists believe that free-ranging cats pose an enormous risk to biodiversity and public health and therefore should be eliminated from the landscape by any means necessary. They further claim that those who question the science or ethics behind their arguments are science deniers (merchants of doubt) seeking to mislead the public. As much as we share a commitment to conservation of biodiversity and wild nature, we believe these ideas are wrong and fuel an unwarranted moral panic over cats. Those who question the ecological or epidemiological status of cats are not science deniers, and it is a false analogy …