Digital Commons Network^™

Social Familiarity Improves Fast-Start Escape Performance In Schooling Fish, Lauren E. Nadler, Mark I. Mccormick, Jacob L. Johansen, Paolo Domenici

Marine & Environmental Sciences Faculty Datasets

Using social groups (i.e. schools) of the tropical damselfish Chromis viridis, we tested how familiarity through repeated social interactions influences fast-start responses, the primary defensive behaviour in a range of taxa, including fish, sharks, and larval amphibians. We focused on reactivity through response latency and kinematic performance (i.e. agility and propulsion) following a simulated predator attack, while distinguishing between first and subsequent responders (direct response to stimulation versus response triggered by integrated direct and social stimulation, respectively). In familiar schools, first and subsequent responders exhibited shorter latency than unfamiliar individuals, demonstrating that familiarity increases reactivity to direct and, potentially, …

Environment–Host–Microbial Interactions Shape The Sarraceniapurpurea Microbiome At The Continental Scale, Zachary B. Freedman, Alicia Mcgrew, Benjamin Baiser, Mathilde Besson, Dominique Gravel, Timothée Poisot, Sydne Record, Lauren B. Trotta, Nicholas J. Gotelli

Biology Faculty Research and Scholarship

The importance of climate, habitat structure, and higher trophic levels on microbial diversity is only beginning to be understood. Here, we examined the influence of climate variables, plant morphology, and the abundance of aquatic invertebrates on the microbial biodiversity of the northern pitcher plant Sarracenia purpurea. The plant's cup‐shaped leaves fill with rainwater and support a miniature, yet full‐fledged, ecosystem with a diverse microbiome that decomposes captured prey and a small network of shredding and filter‐feeding aquatic invertebrates that feed on microbes. We characterized pitcher microbiomes of 108 plants sampled at 36 sites from Florida to Quebec. Structural equation …

Seasonal Variation In Home-Range And Core-Area Size In Verreaux's Sifaka, Brynn Harshbarger

Theses, Dissertations and Capstones

Primates living in seasonal forests must adapt to extreme fluctuation in resource availability. Verreaux’s sifaka ( ) live in Madagascar’s highly seasonal tropical dry forests and experience periods of extreme resource abundance and scarcity. Home- range and core-area size were measured using 95% and 50% kernel estimation, and 95% minimum convex polygons to compare seasonal shifts in space use based on resource availability. There have been no long-term space use studies on Verreaux’s sifaka; therefore, we do not know how their space use changes over time in an environment which is both highly seasonal and highly variable. Our study leverages …

Assessing The Toxicity Of A Reconstituted Water Simulating Streams Influenced By Mountaintop Mining In Central Appalachia, Benjamin David Browning

Theses, Dissertations and Capstones

Freshwater ecosystems in Central Appalachia experience increased concentrations of manganese (Mn) and total dissolved solids from the runoff of surface mines and valley fills. Biological communities have been impacted by these surface mining operations and it has been suggested that the increase in total dissolved solids may contribute to these negative effects, but standard laboratory toxicity tests have not found increased concentrations of total dissolved solids to have such negative effects as seen in the field. The elevated total dissolved solids in mining influenced streams may only be toxic in conjunction with another toxicant that is presence in these systems …

The Effects Of Fire On Oak-Forest Plant Communities Along Soil Moisture Gradients: A 25-Year Study, Rebekah Frances Shupe

Theses, Dissertations and Capstones

In the eastern U.S., fire is a natural disturbance process in Quercus (oak) forests. Fire is thought to promote oak regeneration and plant diversity by reducing competition, preparing a suitable seedbed, and increasing light availability. However, the era of fire suppression that began in the early 20^th century is thought to have negatively impacted oak regeneration and the biodiversity of the understory layer. In this study, we examined the effects of prescribed fire on tree regeneration and the understory layer over 25 years. From a study initiated in 1994, we resampled 45 permanent vegetation plots measuring 1250 m^{2 …}

Modifying An Ergosterol Extraction Protocol To Quantify Fungal Biomass At The University Of Minnesota-Morris, Alex Carroll

Student Research, Papers, and Creative Works

In aquatic ecosystems, fungi play an essential role in decomposing leaves and making nutrients available to other organisms such as invertebrates and detritivores. Therefore, it is useful to quantify the amount of fungal biomass growing on submerged leaves, and this quantity can be estimated by measuring the chemical ergosterol, which is found only in fungi. Gessner (2005) developed an ergosterol extraction protocol using lipid extraction, purification with solid-phase extraction (SPE), and analysis with high-performance liquid chromatography (HPLC). However, not all of the equipment mentioned in the protocol was available at the University of Minnesota-Morris. Therefore, the goal of this project …

The Effects Of Roadways On The Spatial And Temporal Movement Patterns Of Timber Rattlesnakes (Crotalus Horridus), Anna F. Tipton, Dominic L. Desantis

Graduate Research Showcase

Roadways are among the most widespread and disruptive anthropogenic land use features that influence the behavior and movement of wildlife. Negative impacts include vehicle-induced mortality, habitat destruction and fragmentation, and creating barriers to movement which can have far-reaching sub-lethal effects. In an effort to improve upon historical methods of evaluating the influence of prominent landscape features, such as roads, on the movement of small and secretive wildlife, we are using a novel integration of emerging spatial analyses and tri-axial accelerometry in Timber Rattlesnakes (Crotalus horridus) from central Georgia. We used dynamic Brownian Bridge Movement Models to estimate motion …

Data Repository For "Use Of Redwood Basal Hollows By Bats: A Focus On The Townsend’S Big-Eared Bat On The North Coast Of California", Amon J. Armstrong

Research Data Sets

Loss of roosting resources, either through disturbance or removal, negatively affects bats. Identifying sensitive species and determining roost requirements are critical components in conserving their habitat. Cavity roosting bats on the North Coast of California are known to use hollows in large redwood trees. In this study, we examined the factors determining the use of basal tree hollows by different bat species at eight redwood forest sites in Del Norte, Humboldt, and Mendocino Counties, California. Bat guano was collected from 179 basal hollow roosts from 2017 to 2018, and guano mass was used as an index of roosting activity. Nine …

An Exceptionally Small New Polycotylid Plesiosaur (Reptilia: Sauropterygia) With Raptorial Eyes From The Western Interior Seaway Of North America, Robert O’Brien Clark

Theses, Dissertations and Capstones

Polycotylidae is a family of plesiosaurian marine reptiles that evolved during the Early Cretaceous and radiated into multiple genera during the Late Cretaceous, achieving a worldwide distribution. Derived polycotylids of the subclade Polycotylinae have a gracile and elongated rostrum, homodont dentition, an extended mandibular symphysis, and foreshortened temporal fenestrae. In this thesis, I describe a small and highly derived new polycotylid taxon based on three specimens from the Campanian of the Western Interior Seaway in North America. A high number of maxillary teeth, fused neural arches, propodials with well-defined facets, and heavily remodeled cortical bone indicate the specimens are adults, …

Pleistocene Rodents From Southeast Georgia, Parker Rhinehart

Graduate Research Showcase

Late-Pleistocene fossil sites are uncommon in Georgia. However, Clark Quarry, a locality near Brunswick, Georgia, has yielded a large and diverse collection of vertebrate skeletal material dominated by cranial and post-cranial fossils of Columbian mammoths (Mammathus columbi) and giant bison (Bison latifrons). Screen washing of the fossiliferous sediment associated with the bones of the megafauna has produced a large number of microfossils. Here I describe fossil rodents from Clark Quarry. Cranial and post-cranial material of eight rodent taxa have been identified to date. Of these, five are found in the area today: Sigmodon hispidus, Peromyscus sp., …

Soil Macroinvertebrate Responses To Wildfires In The Blue Ridge Mountains, Usa, Madeline Nicole Olliff, Bruce Snyder, Mac Callaham Jr., Melanie K. Taylor

Graduate Research Showcase

Title: Soil Macroinvertebrate Responses to Wildfires in the Blue Ridge Mountains, USA Authors: 1Madeline N. Olliff, 1Bruce A. Snyder, 2Melanie K. Taylor, and 2Mac A. Callaham

1Georgia College and State University, Milledgeville, Georgia, USA; 2USDA Forest Service, Southern Research Station, Athens, Georgia, USA

Abstract: Wildfires are of increasing concern in light of climate change, more frequent late summer droughts, and increasing incidence of human ignitions. There have been few studies examining the effects of wildland fires on soil macroinvertebrates in the Blue Ridge Mountains, in spite of the importance of these animals to soil processes, and their contributions to the …

Fitness Of Interspecific Hybrids In The Genus Cyprinella: An Evaluation Of Swimming Performance In Stream Fishes, Jessica K. Wilks, Gregory J. Glotzbecker, Gary D. Grossman, Michael J. Blum

Graduate Research Showcase

As the result of anthropogenic disturbance, freshwater ecosystems are rapidly being destroyed worldwide. Accordingly, such impacts are also resulting in the loss of aquatic biodiversity. Specifically, the introduction of non-native aquatic species is becoming an increasing concern. Historically, many non-native freshwater fish introductions have been the result of commercial baitfish aquaculture and private aquarium release. Cyprinella lutrensis (the red shiner) is endemic to much of the central U.S., and its natural range does not extent east of the Mississippi River. Since the 1950’s, red shiner have been cultivated and transported across the globe as both bait and aquarium fish. During …

Monitoring Lake Sinclair, Margaret Blackledge

Graduate Research Showcase

Algae, a polyphyletic group of aquatic primary producers, play a great part in earth’s biosphere. They produce half of the world’s oxygen and are major contributors to aquatic biodiversity. When conditions are favorable to a species, algae will bloom. Some algal species will produce algal toxins during a bloom as a potential mechanism to concentrate carbon. Due to the integral part they play in aquatic food webs, nutrient cycling and the potential for harmful algal blooms, algal communities are monitored to determine the health and safety of aquatic environments. Lake Sinclair in middle Georgia is a good model where in …

Age, Growth, And Mortality Of Atlantic Tripletail In The North-Central Gulf Of Mexico, Amanda E. Jefferson, Matthew B. Jargowsky, Meagan N. Schrandt, Pearce T. Cooper, Sean P. Powers, John Dindo, J. Marcus Drymon

University Faculty and Staff Publications

In the southeastern USA and the Gulf of Mexico (GOM), Atlantic Tripletail Lobotes surinamensis are increasingly targeted by recreational anglers, indicating that stock status should be assessed. A critical need for such assessments is age-specific data; however, previous studies have drawn conflicting conclusions regarding the most appropriate structure for aging. Moreover, growth parameters and mortality rates for GOM Atlantic Tripletail are unknown. Therefore, the goals of this study were to (1) evaluate sagittal otoliths and first dorsal spines as aging structures; (2) model combined and sex-specific growth; and (3) estimate mortality rates for GOM Atlantic Tripletail. From 2012 to 2019, …

Choices On Sampling, Sequencing, And Analyzing Dna Influence The Estimation Of Community Composition Of Plant Fungal Symbionts, Jonathan A. Cale, Natalie Scott, Gregory J. Pec, Simon M. Landhäusser, Justine Karst

Publications: Biology

Plant root symbionts, namely mycorrhizal fungi, can be characterized using a variety of methods, but most of these rely on DNA. While Sanger sequencing still fulfills particular research objectives, next‐generation sequencing currently dominates the f ield, thus understanding how the two methods differ is important for identifying both opportunities and limitations to characterizing fungal communities. In addition to testing sequencing methods, we also examined how roots and soils may yield different fungal communities and how disturbance may affect those differences. We sequenced DNA from ectomycorrhizal fungi colonizing roots of Pinus banksiana and found that operational taxonomic unit richness was higher, …

The Ecological Resilience Of A Tropical Montane Pine Forest To Droughts, Fire, And Hurricane Disturbance, Daniel Erland Brugger Swann

Electronic Theses and Dissertations

Owing to the geographic isolation and unique climatic conditions which occur in tropical montane forests (TMFs), these systems are highly sensitive to changes in both climate and disturbance. Therefore, as ongoing climate change alters disturbance regimes – potentially facilitating multiple disturbance interactions much greater than that of isolated disturbances – TMFs may be shifted to alternate stable states. However, study of TMF resilience is essentially unknown given the lack of long-term studies in these systems. We address the resiliency of the tropical montane pine forests of the Cordillera Central, Dominican Republic using long-term climate records, remeasured vegetation data, and reconstructed …

Understanding Patterns And Functional Impacts Of An Invasive Tree And Its Biological Control In A Riparian System, Annie L. Henry

Electronic Theses and Dissertations

Invasive species have become an inextricable part of the landscape, particularly in riparian plant communities, and removal is often a key component of restoration programs. Biological control (biocontrol) is a method of removal that is often both efficient and effective. However, the impact of biocontrol on target species and indirect effects from invasive species removal can be hard to predict. While monitoring the impact of invasive species removal usually involves some species-based assessment such as changes in diversity, historically dominant species or native species, these strategies do not typically provide insight into the mechanisms underlying plant community response to removal. …

Scalability And Performance Tradeoffs In Quantifying Relationships Between Elevation And Tidal Wetland Plant Communities, James R. Holmquist, Lisa Schile-Beers, Kevin Buffington, Meng Lu, Thomas J. Mozdzer, Jefferson Riera, Donald E. Weller, Meghan Williams, J Patrick Megonigal

Biology Faculty Research and Scholarship

Elevation is a major driver of plant ecology and sediment dynamics in tidal wetlands, so accurate and precise spatial data are essential for assessing wetland vulnerability to sea-level rise and making forecasts. We performed survey-grade elevation and vegetation surveys of the Global Change Research Wetland, a brackish microtidal wetland in the Chesapeake Bay estuary, Maryland (USA), to both intercompare unbiased digital elevation model (DEM) creation techniques and to describe niche partitioning of several common tidal wetland plant species. We identified a tradeoff between scalability and performance in creating unbiased DEMs, with more data-intensive methods such as kriging performing better than …

Addressing Bias In Faculty Retention, Sparkle L. Malone, Sydne Record

Biology Faculty Research and Scholarship

The field of ecology in the United States is not fully harnessing the diverse perspectives of the American population. Two major limitations to advancing diversity and inclusion include insufficient awareness of biased attitudes and the lack of large-scale faculty engagement in diversity and inclusion programs. Academic institutions must recognize and value individuals that participate in diversity and inclusion programs. Valuing this work will motivate all ecologists to accept the responsibility for these efforts and not simply assume that the few minorities in their field can do this work.

Analysis Of Methods To Measure Heart Rate In Mytilus Edulis, Kristin Pinho

Student Research Poster Presentations 2021

Non-invasive research will be performed to limit the additional stress from equipment and focus on the harmful effects that polluted run-off water has on mussels’ heart rates. The chemical that will be introduced to the laboratory environment will be weed killer. This research will simulate how water pollution affects different aquatic species and how that ultimately leads to environmental changes, while evaluating the most effective methods to conduct this research.

Identification And Functional Analysis Of Thadh1 And Thadh4 Genes Involved In Tolerance To Waterlogging Stress In Taxodium Hybrid ‘Zhongshanshan 406’, Lei Xuan, Jianfeng Hua, Fan Zhang, Zhiquan Wang, Xiaoxiao Pei, Ying Yang, Yunlong Yin, David Creech

Faculty Publications

The Taxodium hybrid ‘Zhongshanshan 406’ (T. hybrid ‘Zhongshanshan 406’) [Taxodium mucronatum Tenore × Taxodium distichum (L.). Rich] has an outstanding advantage in flooding tolerance and thus has been widely used in wetland afforestation in China. Alcohol dehydrogenase genes (ADHs) played key roles in ethanol metabolism to maintain energy supply for plants in low-oxygen conditions. Two ADH genes were isolated and characterized—ThADH1 and ThADH4 (GenBank ID: AWL83216 and AWL83217—basing on the transcriptome data of T. hybrid ‘Zhongshanshan 406’ grown under waterlogging stress. Then the functions of these two genes were investigated through transient expression and overexpression. The results showed that the …

Tree-Ring Based Reconstruction Of Historical Fire In An Endangered Ecosystem In The Florida Keys, Lauren A. Stachowiak, Maegen L. Rochner, Elizabeth A. Schneider, Grant L. Harley, Savannah A. Collins-Key, Hunter A. Bonawitz

SHU Faculty Publications

Big Pine Key, Florida, is home to one of Earth’s largest swaths of the critically-endangered dry forests. Known as pine rocklands, this fire-adapted ecosystem must experience regular fire to persist and remain healthy. Pine rocklands are composed of a sole canopy species: the South Florida slash pine (Pinus elliottii var. densa), along with a dense understory of various woody and herbaceous species, and minimal surface moisture and soil development. Slash pine record wildfire activity of the surrounding area via fire scars preserved within the annual tree rings formed by the species. Our study used dendrochronology to investigate the fire history …

Precise Multispecies Agricultural Gas Flux Determined Using Broadband Open-Path Dual-Comb Spectroscopy, D. I. Herman, C. Weerasekara Et Al.

School of Natural Resources: Documents and Reviews

No abstract provided.

Assessing Pace-Of-Life: Comparing Metabolism And Behavior In Tarantulas, Haley Vanscoyoc

Master's Theses and Doctoral Dissertations

Pace-of-Life Syndrome (PoLS) links physiology, behavior, and life history to understand how an organism lives and is under-researched in many invertebrate groups. In this study I used five tarantula species to assess if they follow the predictions of PoLS. I compared individual species as well as Old- and New-World lineages and solitary and sub-social species. I predicted that Old- World and sub-social species would have higher resting metabolic rates (RMRs) and activity levels compared to New-World and solitary species. RMRs were measured using an open-flow respirometry system, and a classic open-arena test was used to assess activity level. Spearman’s correlation …

Acoustic Communication In The Atlantic Mudskipper, Periopthalmus Barbarus, Seth Hoffman

Mahurin Honors College Capstone Experience/Thesis Projects

Mudskippers are intertidal fishes that can survive both in and out of the water. They are territorial and exhibit behaviors to attract mates and defend against competitors. Recently, it has been shown that vibrations are produced and transmitted through the mud during such displays in one species, Periophthalmodon septemradiatus. To see if similar vibrations are produced in other species of mudskippers, I recorded the behavioral interactions of pairs of the mudskipper Periophthalmus barbarus via digital video and acoustic signals via accelerometer. Comparative analysis of fish mass, sex, contest length, and contest outcome coupled with acoustic characteristics within dyadic pairings …

A Comparison Of Bee Abundance And Species Richness In Three Managed Grassland Types, Emily Russ

Mahurin Honors College Capstone Experience/Thesis Projects

Bees are threatened by environmental changes, pathogens, and pesticides (Pettis, 2012, Meeus et al., 2018). The goal of the study is to compare and evaluate the bee abundance and species richness in three different field types. My hypothesis is that bees would favor the fields planted for their benefit, and that the tall grass dominated plantings would be preferred over mowed fescue. My findings have low power considering few replicates and the use of relative abundance and relative species richness for statistical analyses. Bee abundance and species richness had an overall positive relationship of varying degrees across habitat types. Relative …

Bryophyte Ecology, Janice M. Glime

Open Access Books

Bryophyte Ecology is an ebook comprised of 5 volumes written by Janice Glime, Professor Emerita of Biological Sciences at Michigan Technological University. Chapter coauthors include Irene Bisang, S. Robbert Gradstein, J. Lissner, W. J. Boelema, and D. H. Wagner.

This book is written in the hope that it is useful to a broad audience, from children to seasoned professionals. Its citations help the scientist find further information. The images help the beginner to understand. Its aim is to broaden the group of people who appreciate and understand the roles that bryophytes play in our world.

For videos that accompany the …

Green Team – Ecological Restoration Of Plaster Creek, Jia Luchs, Caleb Mathai, Rachel Warners, David Warners, Deanna Geelhoed

Summer Research

Plaster Creek, though its watershed is home to many potential stewards in Grand Rapids, is the most polluted creek in West Michigan. The Green Team, a branch of Plaster Creek Stewards, is a group of students that work during the summer with a focus on research, education, and working directly to restore Plaster Creek. The team works toward this goal through urban green infrastructure, utilizing native plants to manage stormwater. Two Calvin students, Caleb Mathai and Jia Luchs, one high school intern, Ben Zwart, and twelve high school students living in the Plaster Creek watershed were hired by PCS this …

Crippling Rapid Evolution Of Metastasis And Drug Resistance In A549 Non-Small Cell Lung Cancer Cells With The Clinically Relevant Hsp90 Inhibitor Auy922, Nickolas Anthony Bacon

Theses, Dissertations and Capstones

The ability for species to evolve new features in response to changing circumstances in order to survive and propagate is a ubiquitous observation on both the macroscopic and microscopic levels of living systems. It should be no surprise, then, that diseases such as cancer utilize their own forms of adaptation to perpetuate themselves when exposed to external threats. Indeed, concepts drawn from Darwinian evolution are now widely accepted to help explain certain aspects of carcinogenesis and malignant progression, the sum of which have come to be known as the theory of tumor evolution. Since metastasis and drug resistance are features …

“Runoff” With Calculations From The Curb, Evan Hsu, Julie Wildschut, Robert Hoeksema

Summer Research

Objectives

• Re-design a one page calculator system with a user manual and database system on Excel
• Research and update old values that the equations use (rainfall and soil porosities for example).