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The Effects Of Environmental Changes On The Biodiversity And Macroecological Patterns Of Bird Assemblages In The United States, Marlen Acosta Alamo

Dissertations, Theses, and Capstone Projects

The current restructuring of species assemblages and global loss of biodiversity result from species-specific responses to anthropogenic changes in climate and land cover. I investigated the effect of these two drivers on the seasonal distribution and biodiversity of birds in the United States and how human-induced habitat loss impacts macroecological patterns such as the species-area and the abundance-occupancy relationships. In Chapter 1, I examined the existence of a correlation between breeding and wintering geographic distributions of birds with different migratory strategies and the effect of changes in climate and the proportion of crop-pasture and urban land cover on this correlation. …

Diverse Origins Of Near-Identical Antifreeze Proteins In Unrelated Fish Lineages Provide Insights Into Evolutionary Mechanisms Of New Gene Birth And Protein Sequence Convergence, Nathan Rives, Vinita Lamba, C.H. Christina Cheng, Xuan Zhuang

Biological Sciences Faculty Publications and Presentations

Determining the origins of novel genes and the mechanisms driving the emergence of new functions is challenging yet crucial for understanding evolutionary innovations. Recently evolved fish antifreeze proteins (AFPs) offer a unique opportunity to explore these processes, particularly the near-identical type I AFP (AFPI) found in four phylogenetically divergent fish taxa. This study tested the hypothesis of protein sequence convergence beyond functional convergence in three unrelated AFPI-bearing fish lineages. Through comprehensive comparative analyses of newly sequenced genomes of winter flounder and grubby sculpin, along with available high-quality genomes of cunner and 14 other related species, the study revealed that near-identical …

Of Geese And Grass: Investigating Impacts Of Brant Grazing On Eeelgrass, Dakota L. Osborne

Master's Theses

Grazing pressure is important in structuring plant communities, particularly in aquatic environments. Eelgrass (Zostera marina), a keystone species in estuaries across North America, is experiencing widespread population declines. As a keystone species, eelgrass provides numerous important functions, including: 1) water filtration, 2) sediment stabilization, 3) providing refuge and nursery habitat for numerous species, and 4) carbon sequestration. Benefits which could be lost if eelgrass beds continue to diminish. California has experienced some of the greatest eelgrass declines, and Morro Bay, CA experienced a 96% decrease in eelgrass from 2007 to 2017. Most studies to date have examined bottom-up …

The Potential For Automated Insect Classification Using Infrared Remote Sensing, Rachel Deahl

Theses

Insects play an important role within ecosystems, occupying almost all trophic levels and providing crucial services such as pollination and decomposition. In addition, they can directly and negatively impact humans as crop pests, parasites, and disease vectors. Thus, it is essential to understand the spatial and temporal dynamics of insect populations and communities. Various forms of remote sensing, such as LiDAR, have been used to capture data on insects but often are costly and require advanced expertise. The objective of this thesis is to evaluate a cost-effective methodology that balances information loss. This thesis aims to outline the discrimination required …

Methodologies For Dry Fixation And Taxidermy Of Education-Oriented Scorpion Specimens, Victoria Tang

Euscorpius

Scorpions hold a renowned status as iconic creatures across numerous cultures in the world. Traditionally preserved as desiccated specimens for educational purposes, they have been exhibited in museums and pedagogic collections, serving as concrete epistemological conduits for public education on biodiversity. However, these specimens frequently lack meticulous organization, potentially misrepresenting the animals’ ethological characteristics. This brief article aims to offer paradigmatic guidance for taxidermy of scorpions, ensuring a more accurate depiction of their in vivo habitus, achievable through the use of readily obtainable tools and undemanding techniques.

Three New Species Of Genus Scorpiops Peters, 1861 From Tibet, China (Scorpiones: Scorpiopidae), With Implications For The Diagnostic Values Of Qualitative Characters, Victoria Tang, Kaichen Ouyang, Zhenbang Liu, František Šťáhlavský

Euscorpius

Three new species of genus Scorpiops Peters, 1861 are described from Tibet Autonomous Region, China. S. deshpandei sp. n. is described based on an adult male and an immature pair collected from Mêdog County, Nyingchi, with additional molecular evidence substantiating its validity against S. longimanus Pocock, 1893. S. kovariki sp. n. is featured by a single adult female from Zayü. This species is only weakly supported by its genetic distance from S. jendeki Kovařík, 1994, but empirical understanding of the morphological variation in Scorpiops species motivated us to consider them as distinct. S. matthewi sp. n. is based on …

Euscorpius Gulhanimae Sp. N. From The Konya Province, Turkey (Scorpiones: Euscorpiidae), Ersen A. Yağmur

Euscorpius

A new species Euscorpius gulhanimae sp. n. is described from southern Turkey (Beyşehir District of Konya Province). It differs by trichobothrial numbers in Pv and et series; these numbers are the highest in all species of Euscorpius in Turkey. E. gulhanimae sp. n. has light greyish yellow mesosoma, dark reddish-brown chela and dark brown metasomal segments III-V; the new species is distinguished by this two-colored feature from all Euscorpius species. With this description, the known number of species in the family Euscorpiidae in Turkey is increased to 21.

Amphiphala, A New Genus And Its Three New Species From Eastern North America (Lepidoptera: Tortricidae: Cochylina), Michael A. Roberts, Michael Sabourin, John W. Brown

Insecta Mundi

Amphiphala Roberts and Sabourin, new genus (Lepidoptera: Tortricidae), is proposed for three new species: A. liatriana Roberts and Sabourin, new species; A. landryana Brown, new species; and A. carolana Sabourin, new species. The genus is recorded from the eastern part of North America from Ontario, Canada south to South Carolina, and west to Manitoba and Mississippi. Owing to its superficial similarity to the banded sunflower moth, Cochylichroa hospes (Walsingham, 1884), Amphiphala remained hidden in North American Lepidoptera collections. Amphiphala liatriana has been reared from northern blazing star, Liatris scariosa (L.) Willd. (Asteraceae), in Maine.

Forest Defoliation By And Invasive Outbreak Insect: Catastrophic Consequences For A Charismatic Mega Moth, Richard L. Lindroth, Mark R. Zierden, Clay J. Morrow, Patricia C. Fernandez

Aspen Bibliography

Earth is now experiencing declines in insect abundance and diversity unparalleled in human history. The drivers underlying those declines are many, complex, and incompletely known. Here, using a natural experiment, we report the first test of the hypothesis that forest defoliation by an invasive outbreak insect compromises the fitness of a native insect via damage-induced increases in toxicity of the forest canopy. We demonstrate that defoliation by the invasive spongy moth (Lymantria dispar) elicits an average 8.4-fold increase in foliar defense expression among aspen (Populus tremuloides) genotypes. In turn, elevated defense dramatically reduces survivorship, feeding, and …

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xxxiii. Three New Species Of Gint From Ethiopia And Somaliland (Buthidae), František Kovařík, Hassan Sh A. Elmi, František Šťáhlavský

Euscorpius

Three new species, Gint sahil sp. n. from Somaliland and Gint abshiri sp. n. and G. derbiae sp. n. from Ethiopia are described and compared with other species of the genus. Additional information is provided on the taxonomy and distribution of the genus Gint, fully complemented with color photos of specimens of the new species, as well as of their habitats. Furthermore, alongside the analyses of external morphology and hemispermatophores, we have provided description of the karyotype of G. abshiri sp. n. This species exhibits karyotype with 2n=27. Included is distribution map and a key for the genus Gint …

Revision Of The Genus Scorpio In Jordan, With A Description Of A New Genus And Three New Species (Scorpiones: Scorpionidae), Bassam Abu Afifeh, Ersen A. Yağmur, Mohammad Al–Saraireh, Zuhair Amr

Euscorpius

Several new Scorpio populations are studied from various habitats in Jordan, including specimens previously identified as Scorpio kruglovi Birula, 1910 and S. fuscus (Ehrenberg, 1829). A new scorpionid genus, Jordanius gen. n. is described, mainly differentiated from the genus Scorpio Linné, 1758 by the elongation and heavy patterns of granulation of chela manus, and granulated chela fingers. Scorpio granulomanus Al-Saraireh et al., 2023 is transferred to the new genus, and Jordanius maysaraensis gen. et sp. n. is described. Also, Scorpio jordanensis sp. n. and S. wahbehi sp. n. are described. Detailed …

Phylotranscriptomic Relationships Of The Oophila Clade Of Green Algae Associated To Amphibian Egg Masses, Ryan Kerney, Miguel Vences, Maria Sachs, Iker Irisarri, Fabian Bartels, Pontus Eriksson, Sven Künzel, Atsushi Kurabayashi, Ane Laugen, Zachary Vegso, Cory Bishop, Hartmut Arndt

Biology Faculty Publications

Green algae usually assigned to the genus Oophila are known to colonize egg capsules of amphibian egg masses across the Nearctic and Palearctic regions. We study the phylogenetic relationships of these algae using a phylotranscriptomic data set of 76 protein-coding single-copy nuclear genes. Our data set includes novel RNAseq data for six amphibian-associated and five free-living green algae, and draft genomes of two of the latter. Within the Oophila clade (nested within Moewusinia), we find samples from two European frogs (Rana dalmatina and R. temporaria) closely related to those of the North American frog R. aurora (Oophila …

Simulating The Long-Term Response Of Forest Succession To Climate Change In The Boreal Forest Of Northern Ontario, Canada, Guy R. Larocque, F. Wayne Bell, Eric B. Searle, Stephen J. Mayor, Thomas Schiks, Parvin Kalantari

Aspen Bibliography

The effect of climate change on forest dynamics is likely to increase in importance in the forthcoming decades. For this reason, it is essential to predict the extent to which changes in temperature, precipitation, and atmospheric CO₂ might affect the development of forest ecosystems and successional pathways. The gap model ZELIG-CFS was used to simulate the potential long-term effects of climate change on species-specific annual change in mean basal area and stand density under two scenarios of representative concentration pathways (RCP), 4.5 and 8.5, for the boreal forest region of Ontario, Canada, where mean temperature, precipitation, and atmospheric CO …

Chinese Tallow Long-Term Impact On Stand Dynamics In A Bottomland Hardwood Forest Following Vegetation Management, Nicklaus R. Langlois

Electronic Theses and Dissertations

Chinese tallow (Triadica sebifera (L.) Small) is an invasive tree known to have negative impacts on bottomland hardwood forests. Chinese tallow is proficient in reproducing and surviving in bottomland hardwood forests because it is more flood and shade tolerant than most native trees. The long-term effectiveness of Chinese tallow control is an important topic to research as only a few long-term studies of Chinese tallow control have been conducted. A 10-year re-measurement of 22 paired plots installed in 2012 on the Pineywoods Mitigation Bank near Diboll, Texas following herbicide treatments examined Chinese tallow and native tree stand structure. Each …

A Comparative Analysis Of Extant Oceanic Shark Species Using Trait-Based Ecology, Elizabeth A. Johnson

All HCAS Student Capstones, Theses, and Dissertations

Over the past few decades, scientists have been working together to mitigate human impacts on global shark populations, but deciding which species need the most immediate attention can be difficult. This study uses a newly emerging approach to ecology, trait-based ecology, to identify trends in trait expression with depth and determine which species have the most unique sets of traits. While trait-based ecology has already been applied to numerous fields, a trait-based approach to shark research is still in its infancy. A total of 15 traits across 337 oceanic shark species were examined to identify trends in trait expression and …

Exploring The Roles Of Physiology And Phylogeny In Novel Signal Evolution, Mia E. Phillips

Dartmouth College Ph.D Dissertations

In animal communication, signal phenotypes are shaped by a combination of selective

forces pushing for improved transmission, efficiency, and detection, and limited by

developmental constraints in signal production and reception abilities (Morton 1975; Guilford &

Dawkins 1991; Endler 1992; Davranoglou et al. 2023). These opposing forces have resulted in

communication strategies that are broadly diverse yet similar among closely related species. We

expect to see gradual changes in signal phenotypes across different clades (Harvey & Pagel

1991). Sometimes, though, the communication strategies of closely related taxa are drastically

different (Ligon et al. 2018), indicating that selection must have overcome the …

Living Dead Forests: Assessing Detrital Services In Puget Sound Pseudotsuga Menziesii Ecosystems, Forrest Becker

Capstone Collection

Coarse woody debris (CWD), the detrital result of down wood recruitment, contributes to wildlife habitat, nutrient cycling, morphological processes like soil formation, and each forest’s sense of place but if undermanaged can fuel wildfires or obstruct stakeholder use. Despite its ubiquity in Puget Sound Douglas fir (Pseudotsuga menziesii) forests in Washington, USA, few studies quantify the exact ecosystem services which down wood provides. This study seeks to understand how forest managers can estimate the ecosystem services of down wood and how human communities perceive down wood management between community, public, and private Douglas fir (P. menziesii) …

Modelling Climate Effects On Site Productivity And Developing Site Index Conversion Equations For Jack Pine And Trembling Aspen Mixed Stands, Mahadev Sharma

Aspen Bibliography

Forest site productivity estimates are crucial for making informed forest resource management decisions.These estimates are valuable both for the tree species currently growing in the stands and for those being considered for future stands. Current models are generally designed for pure stands and do not account for the influence of climate on tree growth. Consequently, site index (SI) conversion equations were developed specifically for jack pine (Pinus banksiana Lamb.) and trembling aspen (Populus tremuloides Michx.) trees grown in naturally originated mixed stands. This work involved sampling 186 trees (93 of each species) from 31 even-aged mixed stands (3 …

A New Species Of Acmaeodera Eschscholtz, 1829 (Coleoptera: Buprestidae) From The State Of Michoacán, Mexico, Jason A. Hansen, Richard L. Westcott

Insecta Mundi

Acmaeodera parasuperba Hansen and Westcott, new species (Coleoptera: Buprestidae), from Michoacán, is described, imaged, and its relationship discussed.

Homocopris Burmeister, 1846 (Coleoptera: Scarabaeidae): Lectotype Designation For Copris Torulosus Eschscholtz, 1822, And Correction On The Geographic Distribution Of The Two Chilean Species, José Mondaca, Fernando Z. Vaz-De-Mello

Insecta Mundi

Homocopris Burmeister, 1846 (Coleoptera: Scarabaeidae) is a small genus of South American dung beetles composed of four species distributed in Argentina, Brazil, and Chile. Recently, a neotype was designated for Copris torulosus Eschscholtz, 1822 (currently H. torulosus) based on the assumption that the original type series had been lost. However, this designation is invalid for failing to comply with articles 75.2, 75.3, 75.3.1, and 75.3.4. of the International Code of Zoological Nomenclature. Furthermore, even if it had been nomenclaturally valid, the neotype now loses its type status because we found a syntype in the material of the Johann …

New Species, New Combinations, Synonymies, And Nomenclatural Discussion For Hispaniolan Longhorned Beetles (Coleoptera: Disteniidae, Cerambycidae), Steven W. Lingafelter, Norman E. Woodley

Insecta Mundi

Fifteen new species of longhorned beetles (Coleoptera: Cerambycidae, Disteniidae) from Hispaniola (the Dominican Republic and Haiti) are diagnosed, described, and illustrated: Novantinoe pilithorax Lingafelter, new species (Disteniini); Eburiola ciferrii Lingafelter, new species (Eburiini), Eburiola konstantinovi Lingafelter, new species (Eburiini), Elaphidion jaragua Lingafelter, new species (Elaphidiini), Linsleyonides guerreroi Lingafelter, new species (Elaphidiini), Compsibidion iviei Lingafelter, new species (Tropidini: Subtribe Neoibidionina), Hormathus albisetosus Lingafelter, new species (Tropidini: Subtribe Compsina), Trichrous eryphoides Lingafelter, new species (Dichophyiini), Plectrocerum woodruffi Lingafelter, new species (Dichophyiini), Oreodera nearnsi Lingafelter, new species (Acrocinini/Acanthoderini), Acrepidopterum fuscum Lingafelter, new species (Apomecynini), Acrepidopterum giesberti Lingafelter, new species (Apomecynini), Estola touroulti Lingafelter, …

Additions To The Knowledge Of The Vietnamese Tiger Beetle Species (Coleoptera: Cicindelidae), Jürgen Wiesner, Christian Kerkering, Miroslav Klícha

Insecta Mundi

Therates tuberosus Fleutiaux, 1893 and Calochroa octogramma octogramma (Chaudoir, 1852) (Coleoptera: Cicindelidae) are newly recorded for Vietnam. Ten additional species are reported to have new provincial records in Vietnam.

Range Extension For Pulchriphyllium Anangu Cumming Et Al., 2023 (Phasmatodea: Phylliidae) And First Record From Maharashtra, Gaurang Tawde, Amol Patwardhan, Royce Cumming

Insecta Mundi

Pulchriphyllium anangu Cumming et al., 2023 is here reported for the first time from Maharashtra state, India. Also, this is the first record of a leaf insect (Phasmatodea: Phylliidae) for Phansad Wildlife Sanctuary, District Raigad, Maharashtra. This sighting represents the northernmost distribution in the Western Ghats for Pulchriphyllium anangu.

The Effects Of People, Time Of Day, And Season On Affiliative And Stereotypic Behaviors In Captive Rhinoptera Bonasus And Other Rays Across Two Human-Interactive Enclosures, Wren C. A. Newman

Theses and Dissertations

Cownose rays (Rhinoptera bonasus) are among the most common species found in aquaria, yet the impact of touch enclosures on their welfare remains largely unknown. While research on animal-visitor interactions has produced mixed results for other species, the lack of studies focusing on fish welfare poses a risk of overlooking potential welfare concerns. Therefore, we aimed to establish a baseline for cownose rays regarding stereotypic behaviors, sociality, and activity in captivity, and to examine the influence of human interaction on these behaviors. We collected over 700 hours of footage from two enclosures at Adventure Aquarium in Camden, NJ …

Meta-Analytical Evidence For Frequency-Dependent Selection Across The Tree Of Life, Miguel Gomez-Llano, Ronald D. Bassar, Erik I. Svensson, Simon P. Tye, Adam M. Siepielski

Biological Sciences Faculty Publications and Presentations

Explaining the maintenance of genetic variation in fitness-related traits within populations is a fundamental challenge in ecology and evolutionary biology. Frequency-dependent selection (FDS) is one mechanism that can maintain such variation, especially when selection favours rare variants (negative FDS). However, our general knowledge about the occurrence of FDS, its strength and direction remain fragmented, limiting general inferences about this important evolutionary process. We systematically reviewed the published literature on FDS and assembled a database of 747 effect sizes from 101 studies to analyse the occurrence, strength, and direction of FDS, and the factors that could explain heterogeneity in FDS. Using …

Identifying New Potential Breeding Pond Sites For The Dusky Gopher Frog In Southern Mississippi, Shelbie Kellum

Master's Theses

The main objective of this thesis was to identify potential new pond sites across southern Mississippi for the critically endangered dusky gopher frog (DGF). Ephemeral ponds are the preferred breeding habitat for the species, but they are quite rare in the region due to the diminishment of the longleaf pine ecosystem. This research addresses gaps in the current literature by providing a broad overview of dusky gopher frog breeding habitat identification. LiDAR derived datasets as well as tools within ArcGIS Pro were utilized in order to perform spatial analysis on sites of interest in south Mississippi. By using this methodology …

Analysis And Tritrophic Associations Of Bats, Bat Flies, And Laboulbeniales Microfungi In Kenya, Ally Willis

Masters Theses & Specialist Projects

Bats (Chiroptera) are host to diverse lineages of ectoparasitic arthropods including ticks, mites, fleas, bat bugs, and bat flies (Arthropoda). Streblidae and Nycteribiidae are families in the dipteran superfamily Hippoboscoidea, and these hematophagous ectoparasites and their host associations are relatively well studied in the American tropics but not as well in east Africa. One of the main properties of host-parasite systems is host specificity, with some Eastern Hemisphere species (Nycteribiidae) appearing to display a lower level. The morphology of bat flies may drive (or be the result of) niche partitioning on the landscape of the host. Streblid bat flies in …

The Evolution Of A Response To Smoke Within The Arthropoda, Adam Miles

Masters Theses & Specialist Projects

Many animals have a survival instinct to flee in response to fire, but do they respond to smoke alone? Many arthropods respond to fire or smoke by moving in the opposite direction (a negative taxis) to obtain shelter. At the species level, taxa that have adapted a behavioral response to fire increase their fitness. This response behavior has been observed in many terrestrial arthropods. Still, the behavior is currently unknown for marine, aquatic, or cave arthropods, which are atypically exposed to smoke or fire. This project assesses how often behavioral adaptation to smoke avoidance may have evolved within Arthropoda. Twenty-two …

The Role Of Elevation In The Migration, Physiology, And Genomic Diversification Of Birds, Jessie L. Williamson

Biology ETDs

Elevational gradients cause profound eco-climatic variation across short distances. Partial pressure of oxygen (PO₂) is a severe challenge that organisms face at high elevations; due partly to specialization on PO₂, most Neotropical bird species have narrow elevational ranges. However, a small fraction are elevational generalists that span sea level to high elevations, and a subset undertake extreme migratory journeys from low to high elevations biannually. My dissertation combines diverse approaches across levels of biological organization to understand how elevation impacts the ecology, evolution, physiology, and migration of montane birds. I examined ‘extreme’ elevational …

Avian Communities Monitored Along A Successional Chronosequence In Bottomland Hardwood Forests In The Lower Mississippi Alluvial Valley, Eamonn Alasdair Thurmond

Electronic Theses and Dissertations

Bottomland hardwood forests in the Lower Mississippi Alluvial Valley have been extensively reduced due to agriculture conversion and altered hydrology. Remnant forests have undergone further degradation from sources such as a lack of forest management, invasive species, and reduced regeneration of oaks (Quercus spp.). Recent restoration efforts of bottomland hardwood forests have focused on implementing wildlife forestry practices that prioritize restoring wildlife habitat while retaining profitable timber harvests. In this study I surveyed bird communities in bottomland hardwood forests in the Lower Mississippi Alluvial Valley along a successional chronosequence. Birds were sampled using automated recording units over 10 days …