Digital Commons Network^™

Terrestrial Habitat Requirements Of Nesting Freshwater Turtles, D. A. Steen, J. P. Gibbs, K. A. Buhlman, J. L. Carr, B. W. Compton, J. D. Congdon, J. S. Doody, J. C. Godwin, Kerry L. Holcomb, D. R. Jackson, F. J. Janzen, G. Johnson, M. T. Jones, J. T. Lamer, T. A. Langen, M. V. Plummer, J. W. Rowe, R. A. Saumure, J. K. Tucker, D. S. Wilson

All Faculty Scholarship for the College of the Sciences

Because particular life history traits affect species vulnerability to development pressures, cross-species summaries of life history traits are useful for generating management guidelines. Conservation of aquatic turtles, many members of which are regionally or globally imperiled, requires knowing the extent of upland habitat used for nesting. Therefore, we compiled distances that nests and gravid females had been observed from wetlands. Based on records of > 8000 nests and gravid female records compiled for 31 species in the United States and Canada, the distances that encompass 95% of nests vary dramatically among genera and populations, from just 8 m for Malaclemys to …

The Ecological Role Of Rhizophytic Green Algae In Soft-Bottom Habitats, Laura Bedinger

USF Tampa Graduate Theses and Dissertations

Rhizophytic algae are large, abundant primary producers throughout tropical and subtropical areas worldwide where they grow as an understory in seagrass beds, as well as form mixed or monospecific beds of exclusively rhizophytic algal species. In this dissertation, "rhizophytic algae" refers to coenocytic green algae (Chlorophyta) in the order Bryopsidales that use a net of rhizoids to anchor in unconsolidated sediments. In the development of seagrass beds, rhizophytic algae colonize bare patches and are thought to facilitate seagrass colonization by stabilizing sediments and providing organic matter. However, despite their prominence little is known about many aspects of the ecology of …

Genetic Variation In Potentially Virulent Vibrio Parahaemolyticus From The Northern Gulf Of Mexico, Nicholas Felix Noriea Iii

Dissertations

Vibrio parahaemolyticus (V_p) is a gram-negative bacterium found naturally in marine and estuarine environments. V_p is found in oysters including those which are later consumed by the public. Sub-populations of potentially virulent Vp contain specific virulence factors and are relevant human pathogens capable of causing gastroenteritis, wound infection, and death. The tdh and trh genes, both encoding hemolysins, have been correlated with the majority of clinical V_p isolates but have not been shown to be the definitive virulence factors.

A total of 146 V_p isolates from the northern Gulf of Mexico were collected and probed …

Effects Of Hypoxia And 4-Tert-Octylphenol On Gene Expression Profiles Of The Sheepshead Minnow (Cyprinodon Variegatus), Arthur Alan Karels

Dissertations

Hypoxia occurs in estuaries of northern Gulf of Mexico and world-wide, with increasing frequency/severity via eutrophication and anthropogenic influences. Hypoxia inducible factors (HIFs) form transcriptional complex and bind DNA at hypoxia responsive elements (HREs) in promoter regions of genes needed for systemic and cellular adaptation of fish to low dissolved oxygen (hypoxia, DO <2.0 mg/ml). Hypoxia-induced activation of HIF-αs can lead to a cascade of downstream activation, such as erythropoietin (EPO). Return to normal DO levels (normoxia), prolyl hydroxylases (PHDs) are activated to degrade HIF-αs back to baseline. Fish are affected by environmental estrogen mimics, like 4-tert-octylphenol (4tOP), binding estrogen receptor alpha (ERα) at estrogen responsive elements (EREs) and activating genes vitellogenin (VTG). Previous research showed overlap or crosstalk between these two mechanistic pathways. Hypoxia triggers unknown factors regulating ERE-mediated ERα signaling pathway, and stressor combinations could increase/decrease hypoxic or endocrine pathway. Research examined molecular/physiological effects of hypoxia (acute and chronic, moderate and severe) and 4tOP (~60μg/L)on adult male and/or female sheepshead minnow (Cyprinodon variegatus). Three genes identified, cloned, and sequenced (HIF-1α, HIF-2α, and PHD3), plus previously identified genes EPO and VTG, were examined in liver/testes exposed to hypoxia and/or 4tOP for cellular/physiological changes. Endpoints examined included mRNA expression from real-time PCR of HIF-1α, HIF-2α, PHD3, EPO, and VTG using cDNA from total RNA extracts, and microarray analyses of genes expressed during the transition from hypoxia back to normoxia. Phylogenetic analyses confirmed isolation of two HIF-α isofoms (HIF-1α and HIF-2α) and the PHD3 isoform. Significant up-regulation of PHD3 occurred within 10 hrs of chronic hypoxia, and persisted when severe (1.5 mg/L) and declined when moderate (~2.5mg/L). Significant up-regulation of HIF-1α and EPO occurred within 30 minutes to 2 hours of onset of acute severe and very severe (~1.08mg/L) hypoxia. Hypoxia acted similar to an estrogen mimic, with huge up-regulation of VTG gene expression in males, and increased VTG levels (additive effect) when hypoxia was combined with 4tOP. Microarray analyses showed 125 genes with significant transcriptional change, with up- or down-regulation from transitions of: (1) hypoxia (72 hrs) to normoxia (74 hrs) and (2) hypoxia+4tOP (72 hrs) to normoxia+4tOP (74 hrs).

Comparison Of Creel Survey Data To Traditional Sampling Techniques In Pit-Lake Fisheries Of Muhlenberg County, Kentucky, Derek L. Rupert

Masters Theses & Specialist Projects

Populations of largemouth bass, Micropterus salmoides, and bluegill, Lepomis macrochirus, were evaluated from five pit-lakes in Muhlenberg County, Kentucky, to determine if accurate proportional stock density (PSD) data can be obtained from a mandatory creel survey. It was hypothesized that the proportion of stock-to-quality (300-400mm) and quality (+400mm) largemouth bass from four years (2007-2010) of creel survey data would be statistically similar to those generated through on-site sampling in 2011. Fish were collected via a combination of gill netting, seining, hook-and-line fishing, and boat-mounted electro-fishing. In two of the pit-lakes, the sampling-generated length frequency data was not significantly …

The Herring River Estuary: Understanding Salt Marsh Restoration And How To Predict The Response Of Phragmites Australis To Increased Tidal Flow, Theresa Murphy

Senior Honors Projects

My presentation invites you to learn about what is involved in planning a salt marsh restoration project. The Herring River Estuary is a disturbed salt marsh ecosystem at Cape Cod National Seashore which has been diked since 1909. The National Park Service (NPS), in cooperation with many partners, is engaged in efforts to restore the now impacted 1,100 acre estuary by re-introducing tidal flow. There is significant complexity involved in trying to restore such an intricate system- from the multitude of environmental factors to important social and economic consequences. There are also several benefits to restored tidal flow. My thesis …

Increase In Ponderosa Pine Density In The Nebraska Sandhills: Impacts On Grassland Plant Diversity And Productivity, Alexa Armstrong

Department of Environmental Studies: Undergraduate Student Theses

Increase in woody species encroachment into semi-arid grasslands and savannas has been of great concern at a global level. Temperature and precipitation are key factors determining vegetation cover; however other factors, such as fire regime and grazing may be at play in semi-arid ecosystems. Historically, in Nebraska’s semi-arid grasslands, woody species have been controlled by periodic fires. Changes in social values and land use, fire suppression, overgrazing, increased N deposition, and climate change, have attributed to the observed shift from grasslands to shrublands or woodlands. The primary objectives of this study were to determine the impacts of Ponderosa pine ( …

Integrating Ecology And Economics For Restoration: Using Ecological Indicators In Valuation Of Ecosystem Services, Eric T. Schultz, Robert Johnston, Kathleen Segerson, Elena Y. Besedin

EEB Articles

Because it can uniquely furnish insights into nonuse values for ecosystem services, survey-based Stated Preference (SP) valuation is widely used to estimate the benefits of ecological restoration. SP surveys ask respondents to select among restoration options yielding different ecological outcomes. This review examines the representation of ecological outcomes in SP studies seeking to quantify values for restoration of aquatic ecosystems. To promote the validity of ecological indicators used in SP valuation, we identified four standards: indicators should be measurable, interpretable, applicable, and comprehensive. We reviewed recent SP studies estimating the value of aquatic ecosystem services to assess whether ecological indicators …

Territories,Territoriality, And Conservation Of The Louisiana Waterthrush And Its Habitat, The Watershed Of The Upper Buffalo National River, Leesia Cheryl Marshall

Graduate Theses and Dissertations

The Louisiana Waterthrush, Parkesia motacilla, is a migratory wood-warbler and breeding season resident of the eastern United States. Males defend breeding territories that extend linearly along clear, fast-flowing, gravel-bottomed, forest streams. Defense includes two song types, primary and extended song. As riverine specialists, birds rely upon aquatic invertebrates as prey and riparian habitat features for nesting. They use a unique foraging maneuver, leaf-pulling, that involves picking up or pulling a leaf from water, and turning it over to search for prey. Their relationship with riparian habitat introduces potential for Louisiana Waterthrushes to serve as indicators of stream health. The …

Stable Isotope Analysis (Delta Nitrogen-15 And Delta Carbon-13) And Bioenergetic Modeling Of Spatial-Temporal Foraging Patterns And Consumption Dynamics In Brown And Rainbow Trout Populations Within Catch-And-Release Areas Of Arkansas Tailwaters, Jon M. Flinders

Graduate Theses and Dissertations

I examined spatial and temporal consumption dynamics using an energy intake model and a bioenergetics model of rainbow trout, Oncorhynchus mykiss, and brown trout, Salmo trutta, within three catch-and-release (C-R) areas in Bull Shoals and Norfork tailwaters to determine whether trout populations were limited by food supply. I also examined the seasonal and ontogenetic shifts in the foraging patterns of brown and rainbow trout within these areas using gut content analysis (GCA) and stable isotope analysis (SIA) of C and N. I examined 605 brown trout and 768 rainbow trout for GCA and SIA at Bull Shoals, Norfork, …

An Evaluation Of Stocking And Habitat Influences On Channel Catfish In Lentic Ecosystems Of The Great Plains, Lindsey K. Chizinski

School of Natural Resources: Dissertations, Theses, and Student Research

Channel catfish Ictalurus punctatus is an important sport fish, particularly in the Great Plains. In Nebraska, a majority of anglers target channel catfish, and fishing activities are a vital part of the state’s economy. Lentic water bodies provide the primary fishing opportunity for catfish anglers in Nebraska. Despite the popularity and economic importance of channel catfish, little is known of its population dynamics or habitat requirements, and existing studies often profile river populations. Current standards for sampling channel catfish in lentic systems often yield inadequate catch to assess populations. The objective of this study was to utilize a recently developed …

Natural And Constructed Wetlands For Ecosystem And Engineering Services In The Arid And Semi-Arid Regions, Achyut Raj Adhikari

UNLV Theses, Dissertations, Professional Papers, and Capstones

The Las Vegas Wash (LVW) has undergone significant wetlands degradation and soil erosion over the past thirty years due to increasing flow resulting from urbanization and large rainfall events in the Las Vegas Valley Watershed. The increased flow and associated pollution load in the LVW and its adverse impact in Lake Mead have alerted stakeholders to pay a greater attention to explore alternative measures for rehabilitation of wetland ecosystems. This dissertation, using the case of changes in LVW, analyzes and describes ecological and engineering services provided by wetlands in arid and semi-arid regions and provides a knowledge base that can …

Prehistoric Foraging Strategies In The Piute Valley Of Southern Nevada, Christopher Alan Brosman

UNLV Theses, Dissertations, Professional Papers, and Capstones

The Piute Valley of Southern Nevada is an incredibly diverse but arid zone in the eastern portion of the Mojave Desert. Most of this diversity can be attributed to the elevation shifts ranging from the Colorado River basin to the peaks of the surrounding mountain ranges. These peaks and valleys provide a multitude of resource zones in which prehistoric hunter-gatherers could provision themselves throughout the year. For this thesis I have used archaeological survey, paleo-climate models, life-sciences data and ethnographic research to perform an in-depth land use analysis of prehistoric forager adaptations to this challenging but life-sustaining environment.

Recent investigations …

Exploring The Seed Bank Dynamics Of Red Brome: Longevity, Density, And Relationship To Fire, Benjamin S. Jurand

UNLV Theses, Dissertations, Professional Papers, and Capstones

This research explores several untested aspects of the seed bank characteristics of red brome (Bromus rubens), an invasive annual grass in southwestern United States arid lands. Red brome is a formidable competitor to native plant species, both annual and perennial alike, and produces many seeds that germinate easily. The stalks of red brome contribute continuous-cover fuel loads that facilitate wildfires destructive to mature native Mojave Desert plant communities. This makes it a priority species for land managers, particularly when dealing with recovery after fire.

This project addressed questions related to the longevity of red brome seeds in soil seed banks …

The Ecological Roles Of Podostemum Ceratophyllum And Cladophora In The Habitat And Dietary Preferences Of The Riverine Caddisfly Hydropsyche Simulans, Brenna Tinsley

Mahurin Honors College Capstone Experience/Thesis Projects

The net-spinning caddisfly Hydropsyche simulans can be a common inhabitant of shallow reaches in riverine systems, and is easily the most common hydropsychid in the upper Green River, Kentucky. This study was performed in summer 2011 and focused on two main questions: 1. Do the larvae of the riverine caddisflies H. simulans and Cheumatopsyche preferentially inhabit dense patches of P. ceratophyllum compared to bare substrates in the upper Green River?, and 2. Do larvae of H. simulans and Cheumatopsyche consume the filamentous alga Cladophora during the annual late summer algal bloom in the upper Green River? Densities of both hydropsychid …

Productivity And Habitat Features Of Swainson's Hawks (Buteo Swainsoni) Nesting In Suburban And Agricultural Areas Of Southwest Idaho, Steven Edward Alsup

Boise State University Theses and Dissertations

I compared nesting success and productivity of Swainson’s Hawks nesting in suburban and agricultural areas in southwest Idaho to assess the effects of land use change on Swainson’s Hawk reproduction. I also evaluated habitat parameters and land use patterns around nesting areas to determine if nest site, habitat, and/or landscape features were related to reproductive success in Swainson’s Hawks. I recorded habitat characteristics, nest tree characteristics, distances to four habitat features, and disturbance types, as well as land use patterns within a 1500m radius around nest trees to assess any differences in nest site characteristics, habitat features, and/or landscape features …

Ribosomal Rna Gene-Based And Multigene Phylogenies Of Smittium (Harpellales) And Allies—Toward Unraveling Relationships Among Early-Diverging Fungi, Yan Wang

Boise State University Theses and Dissertations

Smittium is one of the oldest members of the Harpellales, a group commonly referred to as the “gut fungi”. Gut fungi are endosymbiotic microorganisms that live in the digestive tracts of various Arthropods, worldwide. During the 75 years since the first species, Smittium arvernense, was described, Smittium has increased in number and now includes 81 species. Research on this genus has also helped to advance our understanding of the gut fungi, by serving as a “model” for laboratory studies of the fungal trichomycetes. Many isolates of Smittium have been used for ultrastructural, physiological, host feeding, serological, as well as …

American Pika (Ochotona Princeps): Persistence And Activity Patterns In A Changing Climate, Cody P. Massing

Master's Theses

An increasing amount of evidence suggests that as temperatures increase, montane animals are moving upward in elevation (IPCC 2007, Parmesan and Yohe 2003). As suitable habitats rise in elevation and then disappear altogether, these animals could be pushed to extinction. The American pika, Ochotona princeps, is a montane mammal that lives in western North America, usually at elevations above 1500 m (Smith and Weston 1990). Recent evidence suggests that pika population numbers are dropping in response to rising temperatures (Beever et al. 2010). The pika is a small herbivorous lagomorph, a relative of hares and rabbits. Its habitat is …

Investigating Three Decades Of Vegetation Change In A Mojave Desert Mountain Range, Chris Lee Roberts

UNLV Theses, Dissertations, Professional Papers, and Capstones

This project is a vegetation change study spanning 29 years in the Newberry Mountains of Southern Nevada. Long term monitoring data are crucial for understanding the effects of climate change on vegetation dynamics. Successful management intervention in vegetation change will require identification of early indicator plant species and their responses to climatic cues. This project is one of the oldest comparisons of resurveyed Mojave vegetation community plots with repeatable methodology and the longest survey interval reported for the southeastern Mojave Desert. 103 plots were relocated and resurveyed based on data methods in Jim Holland's thesis titled "A Vegetative Analysis of …

A Coupled Human And Natural Systems Approach To Understanding An Invasive Frog, Eleutherodactylus Coqui, In Hawaii, Emily A. Kalnicky

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Human activities worldwide have altered nature in ways that create new combinations of species and environmental processes. To understand so-called "novel ecosystems" it is important to consider both the natural and the societal factors that shape them, and how those factors are interconnected or "coupled." We used such an approach to explore options for managing a non-native invasive frog, the coqui, which has become established on the island of Hawaii and threatens to spread to other parts of the state.

The nighttime calls of the coqui create a nuisance for property owners when populations become dense enough, as often occurs …

Landscape And Habitat Attributes Influencing Beaver Distribution, Ryan John Leary

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Removal of beaver across the North America landscape from the 1600s through the 1800s has played a major influence on the alteration of stream and riparian resources. Degradation of riparian habitats has negatively impacted many wildlife and fish species, including species listed under the Endangered Species Act. The ability of beavers to modify stream ecosystems offers a unique opportunity to restore these habitats. Many private and government agencies are working towards using beaver as a restoration tool, not only for better functioning ecosystems but also to benefit humans. Taking the big picture look, beaver and their ability to modify the …

The Role Of Fine-Scale Habitat Associations In Structuring Spider Assemblages: Determinants Of Spatial Patterns In Community Composition, Stephanie M. Cobbold

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ecologists strive to identify the mechanisms that drive the identity and abundance of species in different locations, because a better understanding of such factors enables them to better predict the effects of habitat modification on organisms, and to identify landscapes in which species are likely to benefit from conservation interventions. However, there is still no consensus on the mechanisms behind geographical variation in species diversity. The primary objective of this dissertation was to focus on spider assemblages to investigate how the fine-scale habitat associations of organisms may drive the composition of their communities at larger scales. Research was conducted in …

Spatio-Temporal Differentiation And Sociality In Spiders, Jessica Purcell, João Vasconcellos-Neto, Jeffrey Alan Fletcher, Marcelo O. Gonzaga, Leticia Avilés

Complex Systems Faculty Publications and Presentations

Species that differ in their social system, and thus in traits such as group size and dispersal timing, may differ in their use of resources along spatial, temporal, or dietary dimensions. The role of sociality in creating differences in habitat use is best explored by studying closely related species or socially polymorphic species that differ in their social system, but share a common environment. Here we investigate whether five sympatric Anelosimus spider species that range from nearly solitary to highly social differ in their use of space and in their phenology as a function of their social system. By studying …

The Effects Of Invasive Grasses On The Survival And Germination Of Native Forbs, Rachel A. King

Scripps Senior Theses

Invasive species are an increasingly severe conservation problem that can dramatically alter native plant communities. Although ecologists have proposed many mechanisms for the dominance of invasive species, superior competitive ability is one of the longest standing hypotheses. In winter annual plant communities, germination timing affects competition among plants. I hypothesized that grass invasion has changed the costs and benefits of early and late germination, and that species with flexible germination timing would compete better with invasives. Experiments at the Bernard Field Station in Claremont, CA and germinator trials in a controlled environment were used to examine the survivorship and germination …

Paleobiological Assessment Of Controls Underlying Long-Term Diversity Dynamics, Andrés L. Cárdenas

USF Tampa Graduate Theses and Dissertations

Deciphering the factors underlying both long-term patterns of diversity and taxonomic turnover rates (i.e., extinction, and origination) has been one of Paleobiology's major foci for the past three decades. The importance of documenting these components is that they will expand our ability to interpret and model the evolutionary processes underlying those trends, highlight the evolutionary impact of historical events, and contribute to the formulation of robust predictions about the future of global diversity in response to the current anthropologically driven environmental changes. Accordingly, the first part of this study examines the possible occurrence of global marine evolutionary environmental controls into …

Eelgrass Habitat Creation In Nantucket Harbor, Massachusetts, David M. Burdick, Gregg Moore, Chris Peter

Natural Resources & the Environment

In response to eelgrass habitat losses associated with development and marine activities in and around Nantucket Harbor, a plan to restore a meadow by transplanting eelgrass to previously vegetated areas was developed in conjunction with the Nantucket Land Council. Over 6,000 eelgrass shoots were sustainably harvested from an extensive bed within the Harbor that was located just west of First Point and near the inlet to Nantucket Sound. Four weeks following collection, impacts from our collection were shown by a 24% decline in shoot density, but live eelgrass cover did not decline significantly. After 12 weeks, no effects of collecting …

Widespread Diversity In African Toads (Anura: Amietophrynus), Nancy P. Conkey ^, Eli Greenbaum *

COURI Symposium Abstracts, Spring 2012

No abstract provided.

Comparing Avian Diversity Between Perennial And Ephemeral Water Sources Located Within The Northern Chihuahuan Desert, Geoffrey H. Wiseman ^, Jerry D. Johnson, Vanessa L. Lougheed *

COURI Symposium Abstracts, Spring 2012

Water availability in the Chihuahuan Desert is highly variable and dependent on various physical factors. Indio Mountains Research Station (IMRS), located in southeastern Hudspeth County, Texas, contains one perennial water source, Squaw Spring, and at least sixteen man-made ephemeral “tanks” previously used for watering livestock. It was hypothesized that bird diversity would be greater near Squaw Spring, due to continuous water availability, rather than ephemeral tanks where water availability is inconsistent.

The experimental design included a multi-seasonal bird survey by means of visual sightings of different species, backed by photographic evidence to assure accurate identification. Surveys were completed near Squaw …

How Roads Affect The Population Genetic Structure Of The Lizard Uta Stansburiana In The Northern Chihuahuan Desert, Priscilla D. Duran ^, Kevin W. Floyd, Elizabeth J. Walsh *

COURI Symposium Abstracts, Spring 2012

Urbanization can have significant ecological effects on natural populations, including habitat fragmentation through increased road density. Roads may isolate populations, causing disruption of gene flow, inbreeding, and decreased genetic diversity. In this study we investigate how two roads, interstate highway I-10 and rural country road NM-9, affect population genetic structure of ideblotched lizards (Uta stansburiana) in the northern Chihuahuan Desert of New Mexico. Lizards were trapped on both sides of each road, plus one control site/road. Nine microsatellite loci were amplified to determine signatures of disrupted gene flow. Genotypes were obtained for 144 individuals from three sites, I-10 …

Effects Of A Cymothoid Ectoparasite On The Turning Behavior (Lateralization) Of The Bridled Monocle Bream Scolopsis Bilineata, Laura Strong

Independent Study Project (ISP) Collection

Lateralization, or behavioral asymmetry, is the tendency to favor one side of the body over the other, and exists in humans and animals including in mammals, birds, and fishes. It has been found to increase performance in certain behaviors such as escape from predators by lowering reation time. Lateralization has predominantly genetic bases, but can also be influenced by environmental factors. For example, lateralization has been observed to increase in populations of fish subject to high predation pressure as it decreases their response time to predatory attacks. Parasitism may also have important effects on lateralization. In particular, increased drag from …