Digital Commons Network^™

Comparative Microbial Community Composition From Secondary Carbonate (Moonmilk) Deposits: Implications For The Cansiliella Servadeii Cave Hygropetric Food Web, Annette Summers Engel, Maurizio G. Paoletti, Mattia Beggio, Luca Dorigo, Alberto Pamio, Tiziano Gomiero, Claudio Furlan, Mauro Brilli, Angelo Leandro Dreon, Roberto Bertoni, Andrea Squartini

International Journal of Speleology

The microbial diversity of moonmilk, a hydrated calcium carbonate speleothem, was evaluated from two Italian caves to provide context for the food web of highly-specialized troglobitic beetles, Cansiliella spp. (Leptodirinae), with distinctive carbon and nitrogen isotope values indicative of a novel food source. The moonmilk and associated percolating waters had low to no extractable chlorophyll, with an average organic C:N ratio of 9, indicating limited allochthonous input and a significant contribution from microbial biomass. The biomass from moonmilk was estimated to be ~10⁴ micro- and meiofaunal individuals per m² and ~10⁷ microbial cells/ml. Betaproteobacteria dominated the …

Elk (Cervus Elaphus) Seasonal Habitat Selection In A Heterogeneous Forest Structure, Jesse N. Popp, David N.C. Mcgeachy, Josef Hamr

Aspen Bibliography

Seasonal habitat selection by the reintroduced Burwash elk population, approximately 30 km south of Sudbury, Ontario, has been analysed in order to assist in the development of future management. Twenty-five adult females were radio-collared and tracked 1–3 times a week for 3 years. The most prominent patterns included selection of intolerant hardwood forests (trembling aspen, white birch, and balsam poplar) during all seasons, while Great Lakes-St. Lawrence pines (white and red pine dominated stands) were used less than expected based on availability for all seasons. The selection patterns are likely associated with seasonal climatic conditions and forage preferences. Because the …

Movement And Habitat Use Of The Snapping Turtle In An Urban Landscape, Travis J. Ryan, William A. Peterman, Jessica D. Stephens, Sean C. Sterrett

Scholarship and Professional Work - LAS

In order to effectively manage urban habitats, it is important to incorporate the spatial ecology and habitat use of the species utilizing them. Our previous studies have shown that the distribution of upland habitats surrounding a highly urbanized wetland habitat, the Central Canal (Indianapolis, IN, USA) influences the distribution of map turtles (Graptemys geographica) and red-eared sliders (Trachemys scripta) during both the active season and hibernation. In this study we detail the movements and habitat use of another prominent member of the Central Canal turtle assemblage, the common snapping turtle, Chelydra serpentina. We find the same …

James’S Rule And Causes And Consequences Of A Latitudinal Cline In The Demography Of John’S Snapper (Lutjanus Johnii) In Coastal Waters Of Australia, Mike Cappo, Ross J. Marriott, Stephen J. Newman

Fisheries Research Articles

Demographic parameters were derived from sectioned otoliths of John’s Snapper (Lutjanus johnii) from 4 regions across 9° of latitude and 23° of longitude in northern Australia. Latitudinal variation in size and growth rates of this species greatly exceeded longitudinal variation. Populations of John’s Snapper farthest from the equator had the largest body sizes, in line with James’s rule, and the fastest growth rates, contrary to the temperature size rule for ectotherms. A maximum age of 28.6 years, nearly 3 times previous estimates, was recorded and the largest individual was 990 mm in fork length. Females grew to a larger mean …

The Rate And Effects Of Spontaneous Mutation On Fitness Traits In The Social Amoeba, Dictyostelium Discoideum, David W. Hall, Sara Fox, Jennie J. Kuzdzal-Fick, Joan E. Strassmann, David C. Queller

Biology Faculty Research

We performed a mutation accumulation (MA) experiment in the social amoeba Dictyostelium discoideum to estimate the rate and distribution of effects of spontaneous mutations affecting eight putative fitness traits. We found that the per-generation mutation rate for most fitness components is 0.0019 mutations per haploid genome per generation or larger. This rate is an order of magnitude higher than estimates for fitness components in the unicellular eukaryote Saccharomyces cerevisiae, even though the base-pair substitution rate is two orders of magnitude lower. The high rate of fitness-altering mutations observed in this species may be partially explained by a large mutational target …

Evolution And Allometry Of Calcaneal Elongation In Living And Extinct Primates, Doug M. Boyer, Erik R. Seiffert, Justin T. Gladman, Jonathan I. Bloch

Publications and Research

Specialized acrobatic leaping has been recognized as a key adaptive trait tied to the origin and subsequent radiation of euprimates based on its observed frequency in extant primates and inferred frequency in extinct early euprimates. Hypothesized skeletal correlates include elongated tarsal elements, which would be expected to aid leaping by allowing for increased rates and durations of propulsive acceleration at takeoff. Alternatively, authors of a recent study argued that pronounced distal calcaneal elongation of euprimates (compared to other mammalian taxa) was related primarily to specialized pedal grasping. Testing for correlations between calcaneal elongation and leaping versus grasping is complicated by …

The Birds Of Nebraska, Revised Edition 2013, Paul A. Johnsgard

Zea E-Books Collection

This summary of the birds of Nebraska has been restricted to those species that have been convincingly reported at least once in Nebraska from historic time to the present. It has also been modified in its current revision to conform very closely in that regard to the most recent Nebraska Ornithologists’ Union’s “Official List of the Birds of Nebraska” (Brogie, 2010; NOU Records Committee, 2011 and annual updates). The N.O.U.’s official state list of birds (455 species as of 2013, including 329 “regular” species, 42 of “casual” occurrence, 68 accidentals, and six extinct or extirpated species) is based on actual …

A Prototype Decision Support Tool For Ballast Water Risk Management Using A Combination Of Hydrodynamic Models And Agent-Based Modelling, Fleming T. Hansen, Jesper H. Andersen, Michael Potthof, Thomas Uhrenholdt, Hong D. Vo, Olof Lindén

NSBWO

We report the development of a prototype Decision Support Tool (DST) for modelling the risks of spreading of non-indegenous invasive species via ballast water. The DST constitutes of two types of models: A 3D hydrodynamical model calculates the currents in the North Sea and Danish Straits, and an agent-based model estimates the dispersal of selected model organisms with the prevailing currents calculated by the 3D hydrodynamical model. The analysis is concluded by a post processing activity, where scenarios of dispersal are combined into an interim estimate of connectivity within the study area. The latter can be used as a tool …

Climate Change And Plant Demography In The Sagebrush Steppe, Aldo Compagnoni

Green Canyon Environmental Research Area, Logan Utah

No abstract provided.

Policy On Restocking And Stock Enhancement In Western Australia, Department Of Fisheries Western Australia.

Fisheries Management Papers

The practice of releasing hatchery-reared fish into existing populations to augment fishing (stock enhancement) or restore depleted spawning biomass (restocking) has occurred around the world for decades with varying degrees of success. The underpinning concept is to produce and release fish into wild populations to increase their abundance, catch rates and/or fishery yields

If restocking and stock enhancement activities are to be successful, they should have clear objectives and be well planned and targeted at situations where there is a reasonable expectation of having a beneficial effect.

Will Hubbard Brook Soils Be A Source Or Sink Of Carbon In A Changing Climate?, Chris E. Johnson

Civil and Environmental Engineering - All Scholarship

No abstract provided.

Air Pollution: The Trees Aren't Lichen It, Wes L. Hanson, Leigh A. Hanson, Meghan Lockwood, Morgan Yarber

2013 Projects

The Keck Summer Collaborative Research Program provides opportunities for Linfield College students and faculty to conduct research on issues related to the Pacific Northwest, and to bring the research findings back into the classroom within the subsequent academic year. Students partner with faculty to conduct research and present their work to other students, Linfield staff and faculty, and community members during a series of brown bag lunches. Wes Hanson, Leigh Hanson, Meghan Lockwood, and Morgan Yarber conducted research with Nancy Broshot and gave this presentation during the summer of 2013.

In-Water Hull Cleaning And Filtration System: In-Water Cleaning Trials, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Guidance Statement For Oil And Gas Industry Consultation With The Department Of Fisheries, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Animals Represent The Past And The Future, Thomas R. Zentall

Psychology Faculty Publications

It has been proposed by some that only humans have the ability to mentallytravel back in time (i.e., have episodic memory) and forward in time (i.e., have the ability to simulate the future). However, there is evidence from a variety of nonhuman animals (e.g., primates, dolphins, scrub jays, rats, and pigeons) that they have some ability to recover personal memories of what-where-when an event occurred (an earlier requirement of the ability to recover an episodic memory) and answer unexpected questions (another requirement to distinguish between semantic and episodic memory). Also, perhaps more critically, according to Tulving’s more recent definition of …

Changes In Avian Vocalization Occurrence And Frequency Range During The Winter, Amy I. Oden

School of Natural Resources: Dissertations, Theses, and Student Research

Human population expansion has led to an increase in vehicle traffic and therefore vehicle noise. Traffic and traffic noise has been shown to affect avian abundance, breeding success, density and species diversity on the landscape. Documented changes in avian vocalizations due to traffic noise include shifts in amplitude, frequency, rate, timing, and duration of vocalizations along with a number of behavioral adaptations. During the winters of 2011–2012 and 2012–2013, we recorded and measured the “chick-a-dee” vocalization of Black-capped Chickadees (Poecile atricapillus) and the “po-ta-to-chip” vocalization of American Goldfinches (Spinus tristis) to determine …

Comparative Approaches To Studying Strategy: Towards An Evolutionary Account Of Primate Decision Making, Sarah F. Brosnan, Michael J. Beran, Audrey E. Parrish, Sara A. Price, Bart J. Wilson

Economics Faculty Articles and Research

How do primates, humans included, deal with novel problems that arise in interactions with other group members? Despite much research regarding how animals and humans solve social problems, few studies have utilized comparable procedures, outcomes, or measures across different species. Thus, it is difficult to piece together the evolution of decision making, including the roots from which human economic decision making emerged. Recently, a comparative body of decision making research has emerged, relying largely on the methodology of experimental economics in order to address these questions in a cross-species fashion. Experimental economics is an ideal method of inquiry for this …

Systematics And Distributions Of The Genera Cyrtusa Erichson, Ecarinosphaerula Hatch, Isoplastus Horn, Liocyrtusa Daffner, Lionothus Brown, And Zeadolopus Broun Of The United States And Canada (Coleoptera: Leiodidae: Leiodinae: Leiodini), Stewart B. Peck, Joyce Cook

Insecta Mundi

The following genera of Leiodini (Coleoptera: Leiodidae: Leiodinae) of the continental United States and Canada are reviewed: Cyrtusa Erichson, with two species; Isoplastus Horn, with two species (one new); Liocyrtusa Daffner, with three species; Lionothus Brown, with five species (three new), and Zeadolopus Broun, with four species (all genera are in the “Cyrtusa genus group”) and Ecarinosphaerula Hatch, with one named species (in the “Leiodes genus group”). The new species are Isoplastus floridanus Peck and Cook of Florida; Lionothus bidentatus Peck and Cook of Texas and Oklahoma, Lionothus exiguus Peck and Cook of Florida and Texas, and Lionothus …

Oyster Bed Mapping In The Great Bay Estuary, 2012-2013, Raymond E. Grizzle, Krystin M. Ward

PREP Reports & Publications

Six major oyster beds (reefs) in New Hampshire are mapped periodically to assess wild oyster populations in the Great Bay Estuary. Data on the spatial extent of the beds are combined with density and other measures to estimate the abundances of live oysters. The first objective of the present project was to determine the spatial extent of these six oyster beds, and to compare the 2012/2013 data with previous mapping efforts. A second objective was twofold: to map the extent of live oyster bottom at selected recent oyster restoration sites, and to map areas where oyster beds have been known …

A Comprehensive And Integrative Reconstruction Of Evolutionary History For Anomura (Crustacea: Decapoda)., Heather D Bracken-Grissom, Maren E Cannon, Patricia Cabezas, Rodney M Feldmann, Carrie E Schweitzer, Shane T Ahyong, Darryl L Felder, Rafael Lemaitre, Keith A Crandall

Computational Biology Institute

BACKGROUND: The infraorder Anomura has long captivated the attention of evolutionary biologists due to its impressive morphological diversity and ecological adaptations. To date, 2500 extant species have been described but phylogenetic relationships at high taxonomic levels remain unresolved. Here, we reconstruct the evolutionary history-phylogeny, divergence times, character evolution and diversification-of this speciose clade. For this purpose, we sequenced two mitochondrial (16S and 12S) and three nuclear (H3, 18S and 28S) markers for 19 of the 20 extant families, using traditional Sanger and next-generation 454 sequencing methods. Molecular data were combined with 156 morphological characters in order to estimate the largest …

Responses Of Soil Respiration And Its Temperature/Moisture Sensitivity To Precipitation In Three Subtropical Forests In Southern China, H. Jiang, Qi Deng, Guoyi Zhou, Dafeng Hui, Deqiang Zhang, S. Liu, Guowei Chu, J. Li

Biology Faculty Research

Both long-term observation data and model simulations suggest an increasing chance of serious drought in the dry season and extreme flood in the wet season in southern China, yet little is known about how changes in precipitation pattern will affect soil respiration in the region. We conducted a field experiment to study the responses of soil respiration to precipitation manipulations – precipitation exclusion to mimic drought, double precipitation to simulate flood, and ambient precipitation as control (abbr. EP, DP and AP, respectively) – in three subtropical forests in southern China. The three forest sites include Masson pine forest (PF), coniferous …

A Floristic Analysis And Comparison Of Plant Communities In Harlan County, Nebraska, Naomi D. Hastings, Steven J. Rothenberger

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Historically, the Republican River Valley in Harlan County, Nebraska, has been extensively explored, but the county flora has continually been under-represented and has been found to lack records for plants that are considered common. During the 2009 growing season, a taxonomic study and comparison of 3 different sites in Harlan County was made. Site #1 was pastureland and Sites #2 and #3 were both riparian, located on the north side of the Republican River. Collections were pressed, dried, identified, and deposited in the University of Nebraska at Kearney Herbarium (NEBK). Forty-eight new county records were verified, in­cluding cutleaf-cucumber (Cyclanthera …

Spatial And Temporal Patterns In Macrofaunal Diversity Components Relative To Sea Floor Landscape, Roman Zajac, Brittney R. Gibbons, Joseph M. Vozarik

Biology and Environmental Science Faculty Publications

We examined temporal changes in macrofaunal α- and β-diversity over several spatial scales (within patches, among patches, across landscapes and across regions) in Long Island Sound on the northeast USA coast. Regional ε-diversity was estimated at 144 taxa, however γ-diversity fluctuated over time as did α- and β-diversity components. Based on additive partitioning, patch- and region-scale β-diversity components generally had the highest contributions to γ-diversity; lower percentages were found at within-patch and landscape scales. Multiplicative diversity partitioning indicated highest species turnover at within- and among patch scales. For all partition results, within-patch and patch-scale β-diversity increased sharply when hypoxia impacted …

Nature Notes: Environews # 6, Richard Philp

Data and Test Instruments

This paper reviews rewcent informaion regarding invasive species and vindicates the lowly beaver

Evolution Of A Higher Intracellular Oxidizing Environment In Caenorhabditis Elegans Under Relaxed Selection, Joanna Joyner-Matos, Kiley A. Hicks, Dustin Cousins, Michelle Keller, Dee R. Denver, Charles F. Baer, Suzanne Estes

Biology Faculty Publications and Presentations

We explored the relationship between relaxed selection, oxidative stress, and spontaneous mutation in a set of mutationaccumulation (MA) lines of the nematode Caenorhabditis elegans and in their common ancestor. We measured steady-state levels of free radicals and oxidatively damaged guanosine nucleosides in the somatic tissues of five MA lines for which nuclear genome base substitution and GC-TA transversion frequencies are known. The two markers of oxidative stress are highly correlated and are elevated in the MA lines relative to the ancestor; point estimates of the per-generation rate of mutational decay (DM) of these measures of oxidative stress are similar to …

Ectoparasites Of The Virginia Opossum (Didelphis Virginiana), Raccoon (Procyon Lotor), And Striped Skunk (Mephitis Mephitis) From Keith County, Nebraska, Lance A. Durden, Dennis J. Richardson

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Six Virginia opossums (Didelphis virginiana), nine raccoons (Procyon lotor) and one striped skunk (Mephitis mephitis) collected from Keith County Nebraska were examined for ectoparasites. All three host species were parasitized by adults of the American dog tick, Dermacentor variabilis. Opossums were also parasitized by the flea Pulex simulans and the tiny fur mite Didelphilichus serri­fer; the latter species represents a new state record for Nebraska. Raccoons were also parasitized by P. simulans and by the lago­morph-associated flea Euhoplopsyllus glacialis affinis, whereas the skunk was also parasitized by the chewing louse Neotrichodectes …

Estudios Científicos En El Estado De Hidalgo Y Zonas Aledañas, Volumen Ii, Griselda Pulido-Flores, Scott Monks

Zea E-Books Collection

Los 16 capítulos que conforman este libro son una contribución al conocimiento de la biodiversidad y conservación de los recursos naturales en el estado de Hidalgo, México.

Se aborda el derecho de propiedad intelectual en la biodiversidad, citando algunos ejemplos de México. Así mismo, se presenta un estudio de la biodiversidad y distribución de la herpetofauna en cuatro tipos de vegetación. Desde el punto de vista de la helmintología se presentan dos estudios de los helmintos parásitos de vertebrados silvestres; con nuevos registros de hospederos y localidades de algunas especies de helmintos para Hidalgo. También, se aborda el uso de …

Wallace On Natural Selection: What Did He Really Have In Mind?, Charles H. Smith

DLPS Faculty Publications

No abstract provided.

Environmental Impacts Of One Puppy Mill Among Many: A Case History, John A. Gill

Puppy Mills Collection

In recent decades, the animal welfare aspects of irresponsibly-managed commercial dog-breeding businesses have attracted national attention, prompting legislative and regulatory actions. However, the environmental impacts of such businesses, also known as puppy mills, have received far less attention. Most puppy mills are secretive; therefore, it is hard to get documented information about their environmental impacts. Although the former Whispering Oaks Kennels near Parkersburg, W.Va., also kept secrets, reliable environmental information regarding its operation became available because in the summer of 2008, Wood County cited the facility for violating the State’s water pollution and solid waste statutes. This report is based …

Marine Invertebrates: Communities At Risk, Jennifer A. Mather

Ecological Impacts of Climate Change Collection

Our definition of the word ‘animal’ centers on vertebrates, yet 99% of the animals on the planet are invertebrates, about which we know little. In addition, although the Census of Marine Life (COML.org) has recently conducted an extensive audit of marine ecosystems, we still do not understand much about the animals of the seas. Surveys of the best-known ecosystems, in which invertebrate populations often play a key role, show that the invertebrate populations are affected by human impact. Coral animals are the foundation of coral reef systems, which are estimated to contain 30% of the species in the ocean. Physical …