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Benthic And Planktonic Microalgal Community Structure And Primary Productivity In Lower Chesapeake Bay, Matthew Reginald Semcheski

Biological Sciences Theses & Dissertations

Microalgal populations are trophically important to a variety of micro- and macroheterotrophs in marine and estuarine systems. In Chesapeake Bay, microalgae facilitate the survival and development of ecologically and economically relevant fauna, including shellfish and finfish populations. While regarded as significant components of coastal environments, microphytobenthic communities are historically understudied. In Chesapeake Bay, the importance of phytoplankton to the ecosystem is understood, but the contribution of microphytobenthos remains unclear. This project surveys intertidal microphytobenthic communities, in relation to phytoplankton communities, around lower Chesapeake Bay describing the taxonomic makeup of these populations, coupled with quantification of cell abundance, biomass, and primary …

Overwintering And Early Season Amplification Of Eastern Equine Encephalitis Virus In The Southeastern United States, Andrea Bingham

USF Tampa Graduate Theses and Dissertations

Eastern equine encephalitis virus (EEEV) is a highly pathogenic arbovirus that causes severe disease, with a mortality rate of approximately 30-35% in humans and 80-90% in horses. Studies dating back to the 1930's have identified many of the epidemiological and ecological aspects of the virus. However, there are several aspects of EEEV's transmission cycle that remain unclear. In the northeastern states, transmission is seasonal, peaking in the late summer months, while in Florida there is year-round transmission of EEEV. Recent phylogenetic studies have also suggested that Florida may serve as a reservoir for EEEV; the virus may periodically be introduced …

Host Use Patterns By The European Woodwasp, Sirex Noctilio, In Its Native And Invaded Range, Matthew P. Ayres, Rebeca Pena, Jeffrey A. Lombardo, Maria J. Lombardero

Dartmouth Scholarship

Accelerating introductions of forest insects challenge decision-makers who might or might not respond with surveillance programs, quarantines, eradication efforts, or biological control programs. Comparing ecological controls on indigenous vs. introduced populations could inform responses to new introductions. We studied the European woodwasp, Sirex noctilio, which is not a pest in its native forests, is a serious invasive pest in the southern hemisphere, and now has an uncertain future in North America after its introduction there. Indigenous populations of S. noctilio (in Galicia, Spain) resembled those in New York in that S. noctilio were largely restricted to suppressed trees that …

Consequences Of A Refuge For The Predator-Prey Dynamics Of A Wolf-Elk System In Banff National Park, Alberta, Canada, Joshua F. Goldberg, Mark Hebblewhite, Jonathan M. Bardsley

Wildlife Biology Faculty Publications

Refugia can affect predator-prey dynamics via movements between refuge and non-refuge areas. We examine the influence of a refuge on population dynamics in a large mammal predator-prey system. Wolves (Canis lupus) have recolonized much of their former range in North America, and as a result, ungulate prey have exploited refugia to reduce predation risk with unknown impacts on wolf-prey dynamics. We examined the influence of a refuge on elk (Cervus elaphus) and wolf population dynamics in Banff National Park. Elk occupy the Banff townsite with little predation, whereas elk in the adjoining Bow Valley experience higher wolf predation. The Banff …

Karenia Brevis Harmful Algal Blooms: Their Role In Structuring The Organismal Community On The West Florida Shelf, Alisha Marie Gray

USF Tampa Graduate Theses and Dissertations

Karenia brevis dinoflagellate blooms off the west coast of Florida can create devastating effects on marine communities when they release a neurotoxin known as a brevetoxin. These blooms, informally referred to as red tides, can cause massive fish kills, necessitate closures of shellfish fisheries, and can even leave lingering toxins that impact shelf communities long after the bloom has dissipated. As a result, much effort has been put into studying K. brevis bloom initiation and dynamics. However, how K. brevis blooms impact Florida's fisheries is not fully understood because the relationship between K. brevis cell counts and fish mortality is …

Assessing The Homogenization Of Urban Land Management With An Application To Us Residential Lawn Care, Colin Polsky, J. Morgan Grove, Chris Knudson, Peter M. Groffman, Neil D. Bettez, Jeannine Cavender-Bares, Sharon J. Hall, James B. Heffernan, Sarah E. Hobbie, Kelli L. Larson, Jennifer L. Morse, Christopher Neill, Kristen C. Nelson, Laura A. Ogden, Jarlath O'Neil-Dunne, Diane E. Pataki, Rinku Roy Chowdhury, Meredith K. Steele

Environmental Science and Management Faculty Publications and Presentations

Changes in land use, land cover, and land management present some of the greatest potential global environmental challenges of the 21st century. Urbanization, one of the principal drivers of these transformations, is commonly thought to be generating land changes that are increasingly similar. An implication of this multiscale homogenization hypothesis is that the ecosystem structure and function and human behaviors associated with urbanization should be more similar in certain kinds of urbanized locations across biogeophysical gradients than across urbanization gradients in places with similar biogeophysical characteristics. This paper introduces an analytical framework for testing this hypothesis, and applies the framework …

Pathways Of Embodiment: Drug Use Among Adolescents In Popay[Aacute]N Colombia, Sarah Louise Fishleder

USF Tampa Graduate Theses and Dissertations

This research examines the interrelated biological and cultural factors that determine pathways by which recreational drug use is manifest to addiction in the lives of youth aged 12-18 in Popay[aacute]n, Colombia. It utilizes existing data from mixed methods research conducted between 2004-2005 examining epidemiological risk factors, drug use, perceptions about drugs, and a biological phenomenon of the brain known as incentive salience. Perceptions and experiences related to drugs were gathered using structured methods. MDS and hierarchical plots of drug perceptions are presented in order to demonstrate the power of culture and expectation on perception and choice. Structural equation modeling was …

Epibenthic Mobile Invertebrates Along The Florida Reef Tract: Diversity And Community Structure, Kristin Netchy

USF Tampa Graduate Theses and Dissertations

Benthic mobile invertebrates are important components of coral-reef diversity and community structure, though, in most cases, their ecological contributions are poorly known. Baseline information on their diversity, prevalence, assemblages, and ecological roles is needed to aid in the conservation of coral-reef habitats. The objectives of this study are to 1) describe diversity and assemblages of epibenthic, mobile invertebrates in shallow water coral-reef communities in Florida, 2) evaluate their ecological roles by reviewing published literature on diet, and 3) measure the degree of linear dependence between mobile invertebrates and scleractinian corals. Underwater surveys were conducted in the summer of 2013 at …

Hymenolepis Robertrauschi N. Sp. From Grasshopper Mice Onychomys Spp. In New Mexico And Nebraska, U.S.A., Scott Lyell Gardner, Brent A. Luedders, Donald W. Duszynski

Harold W. Manter Laboratory of Parasitology: Faculty Publications

From 1989 through 1998, a total of 358 grasshopper mice were collected and examined for helminth and protistan parasites from several habitat types on the Sevilleta Long Term Ecological Research (LTER) site in New Mexico, U.S.A. Of these, 205 individuals were identified as Onychomys leucogaster (Wied-Neuwied 1841) and 153 individuals were classified as O. arenicola Mearns 1896. Many individuals of Onychomys were infected with a new species of Hymenolepididae (Hymenolepis robertrauschi), which is herein described, illustrated, and compared with all species of Nearctic Hymenolepis s. str. Hymenolepis robertrauschi was found in 26% of the individuals of O. arenicola …

State Of The U.S. Ocean And Coastal Economies 2014, Judith T. Kildow, Charles S. Colgan, Jason D. Scorse, Pat Johnston, Matt Nichols

Publications

The nation's coasts and oceans contribute much to the United States economy. For the past 14 years, the National Ocean Economics Program (NOEP), now a program of the Center for the Blue Economy at the Monterey Institute of International Studies, has compiled time-series data that track economic activities, demographics, ports and cargo volume and value, natural resource production and value, non-market values, and federal expenditures in the U.S. coastal zone both on land and in the water. A report on the ocean and coastal economies of the United States was released by NOEP in 2009 covering data through 2005. The …

Molecular Evolution Of Glycoside Hydrolase Genes In The Western Corn Rootworm (Diabrotica Virgifera Virgifera), Seong-Il Eyun, Haichuan Wang, Yannick Pauchet, Richard H. Ffrench-Constant, Andrew K. Benson, Arnubio Valencia-Jimenez, Etsuko N. Moriyama, Blair Siegfried

Department of Entomology: Faculty Publications

Cellulose is an important nutritional resource for a number of insect herbivores. Digestion of cellulose and other polysaccharides in plant-based diets requires several types of enzymes including a number of glycoside hydrolase (GH) families. In a previous study, we showed that a single GH45 gene is present in the midgut tissue of the western corn rootworm, Diabrotica virgifera virgifera (Coleoptera: Chrysomelidae). However, the presence of multiple enzymes was also suggested by the lack of a significant biological response when the expression of the gene was silenced by RNA interference. In order to clarify the repertoire of cellulose-degrading enzymes and related …

Influence Of Introgression And Geological Processes On Phylogenetic Relationships Of Western North American Mountain Suckers (Pantosteus, Catostomidae), Peter J. Unmack, Thomas E. Dowling, Nina J. Laitinen, Carol L. Secor, Richard L. Mayden, Dennis K. Shiozawa, Gerald R. Smith

Biological Sciences Faculty Research Publications

Intense geological activity caused major topographic changes in Western North America over the past 15 million years. Major rivers here are composites of different ancient rivers, resulting in isolation and mixing episodes between river basins over time. This history influenced the diversification of most of the aquatic fauna. The genus Pantosteus is one of several clades centered in this tectonically active region. The eight recognized Pantosteus species are widespread and common across southwestern Canada, western USA and into northern Mexico. They are typically found in medium gradient, middle-elevation reaches of rivers over rocky substrates. This study (1) compares molecular data …

Evolutionary Relationships Of The Critically Endangered Frog Ericabatrachus Baleensis Largen, 1991 With Notes On Incorporating Previously Unsampled Taxa Into Large-Scale Phylogenetic Analyses, Karen Siu-Ting, David J. Gower, Davide Pisani, Roman Kassahun, Fikirte Gebresenbet, Michele Menegon, Abebe A. Mengistu, Samy A. Saber, Rafael O. De Sá, Mark Wilkinson, Simon P. Loader

Biology Faculty Publications

Background: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic genus Ericabatrachus has been addressed thus far only with phenotypic data and remains contentious.

Results: We obtained fresh samples of the now rare and Critically Endangered Ericabatrachus baleensis and generated DNA sequences for two mitochondrial and four nuclear genes. Analyses of these new data using de novo and constrained-tree phylogenetic reconstructions strongly support a close relationship between Ericabatrachus and …

Comparison Of Gross Primary Productivity Derived From Gimms Ndvi3g, Gimms, And Modis In Southeast Asia, Junbang Wang, Jingwei Dong, Jiyuan Liu, Mei Huang, Guicai Li, Steven W. Running, William Kolby Smith, Warwick Harris, Nobuko Saigusa, Hiroaki Kondo, Yunfen Liu, Takashi Hirano, Xiangming Xiao

Ecosystem and Conservation Sciences Faculty Publications

Gross primary production (GPP) plays an important role in the net ecosystem exchange of CO2 between the atmosphere and terrestrial ecosystems. It is particularly important to monitor GPP in Southeast Asia because of increasing rates of tropical forest degradation and deforestation in the region in recent decades. The newly available, improved, third generation Normalized Difference Vegetation Index (NDVI3g) from the Global Inventory Modelling and Mapping Studies (GIMMS) group provides a long temporal dataset, from July 1981 to December 2011, for terrestrial carbon cycle and climate response research. However, GIMMS NDVI3g-based GPP estimates are not yet available. We applied the GLOPEM-CEVSA …

Notes On The Avifauna Of The Floodplain Forest Of The Rio Mamoré, Beni, Bolivia, With A Description Of The Juvenile Plumage Of Unicolored Thrush (Turdus Haplochrous) (Aves: Turdidae), Ryan S. Terrill, Miguel Angel Aponte Justiniano, Michael G. Harvey, Glenn F. Seeholzer, Rosa Ines Strem

Occasional Papers of the Museum of Natural Science, Louisiana State University

Notes on the avifauna of the floodplain forest of the Rio Mamoré, Beni, Bolivia, with a description of the Juvenile plumage of Unicolored Thrush (Turdus haplochrous) – The floodplain forest along the Rio Mamoré is an isolated stretch of riverine forest in the matrix of flooded grassland and gallery forest of the Llanos de Moxos in the department of Beni, Bolivia and contains an understudied avifauna. This habitat potentially represents a stronghold for certain bird taxa. During Dec 2010-Jan 2011, we conducted daily audiovisual censuses, targeted collecting with shotguns, and general collecting with mist-nets for birds at a …

Did Pre-Clovis People Inhabit The Paisley Caves (And Why Does It Matter)?, Stuart J. Fiedel

Human Biology Open Access Pre-Prints

The date and processes of initial human colonization of the Americas are crucial issues for the understanding of human biological and cultural development. For example, Soares et al. (2009) cited the American archaeological record to validate their proposed revision of the human mitochondrial molecular clock. Their suggested mutation rate puts the date of rapid expansion of Native American clades at around 13,500–15,000 cal BP. Similarly, Poznik et al. (2013) have used the “high-confidence archaeological dating” of the initial peopling of the Americas to calibrate the rates of both Y-chromosome and mtDNA mutation and thereby to reconcile the ages of the …

Pedigree Structure And Kinship Measurements Of A Mid-Michigan Community: A New North American Population Isolate Identified, Joseph D. Bonner, Rachel Fisher, James Klein, Qing Lu, Ellen Wilch, Karen H. Friderici, Jill L. Elfenbein, Debra L. Schutte, Brian C. Schutte

Human Biology Open Access Pre-Prints

Previous studies identified a cluster of individuals with an autosomal recessive form of deafness that resides in a small region of mid-Michigan. We hypothesized that affected members from this community descend from a defined founder population. Using public records and personal interviews, we constructed a genealogical database that includes the affected individuals and their extended families as descendants of 461 settlers who emigrated from the Eifel region of Germany between 1836 and 1875. The genealogical database represents a 13-generation pedigree that includes 27,747 descendants of these settlers. Among these descendants, 13,784 are presumed living. Many of the extant descendants reside …

Effect Of Recent Historical Events On Migration And Isonymic Stratification Among The Rama Amerindians From Nicaragua, Norberto F. Baldi

Human Biology Open Access Pre-Prints

The Rama Amerindians from southern Nicaragua are one of few indigenous populations inhabiting the east coast and lowlands of southern Central America. Early 18th century ethnohistorical accounts depicted the Rama as a mobile hunter-gatherer and horticulturalists group dispersed in household units along southern Nicaraguan rivers. However, during the 19th and 20th centuries, Rama settlement patterns changed to aggregated communities due to increased competition for local resources resulting from non-indigenous immigration. This study’s objective was to discern the degree of relatedness between and within subdivisions of seven of these communities based on patterns of surname variation and genealogical data. We applied …

Review: The Rediscovery Of The Wild, Jillian M. Slater

Marian Library Faculty Publications

Copyright (c) 2014, Jillian Slater. This review is available for non-commercial, educational use, provided that the user identify the author and the publication listed as the place of first publication, along with the volume and the year of the work's publication.

Celiac Disease As A Model For The Evolution Of Multifactorial Disease In Humans, Aaron Sams, John Hawks

Human Biology Open Access Pre-Prints

Celiac disease (CD) is a multifactorial chronic inflammatory condition that results in injury of the mucosal lining of the small intestine upon ingestion of wheat gluten and related proteins from barley and rye. Although the exact mechanisms leading to CD are not fully understood, the genetic basis of CD has been relatively well characterized. In this review we briefly review the history of discovery, clinical presentation, pathophysiology, and current understanding of the genetics underlying CD risk. Then, we discuss what is known about the current distribution and evolutionary history of genes underlying CD risk in light of other evolutionary models …

Lactase Persistence Variants In Arabia And In The African Arabs, Edita Priehodova, Abdelhay Abdelsawy, Evelyne Heyer, Viktor Cerny

Human Biology Open Access Pre-Prints

Lactase persistence (LP), the state enabling the digestion of milk sugar in adulthood occurs only in some human populations. The convergent and independent origin of this physiological ability in Europe and Africa is linked with animal domestication that had either started in both places independently or had spread from the Near East by acculturation. However, it has recently been shown that at least in its southern parts, the population of Arabia not only has a different LP-associated mutation profile than the rest of Africa and Europe but had also experienced an independent demographic expansion occurring before the Neolithic around the …

Conservative Evolution, Sustainability, And Culture, Gábor Náray-Szabó

CLCWeb: Comparative Literature and Culture

In his article "Conservative Evolution, Sustainability, and Culture" Gábor Náray-Szabó argues that evolution is conservative in the sense that throughout the history of the universe old constructs like elementary particles, amino acids, and living cells remained conserved while the world evolved/evolves in complexity. A similar process can be observed in cultural evolution as components of society and culture continue to evolve. Considering the increasing pressure on natural resources by material consumption, a close alliance between past, present, and future generations is unavoidable and thus Náray-Szabó posits that concepts of conservative evolution and sustainability are related. However, in order to avoid …

The Dynamics Of Animal Social Networks: Analytical, Conceptual, And Theoretical Advances, Noa Pinter-Wollman, Elizabeth A. Hobson, Jennifer E. Smith, Andrew Edelman, Daizaburo Shizuka, Shermin De Silva, James Waters, Steven D. Prager, Takao Sasaki, George Wittemyer, Jennifer Fewell, David B. Mcdonald

Papers in Behavior in Biological Sciences

Social network analysis provides a broad and complex perspective on animal sociality that is widely applicable to almost any species. Recent applications demonstrate the utility of network analysis for advancing our understanding of the dynamics, selection pressures, development, and evolution of complex social systems. However, most studies of animal social networks rely primarily on a descriptive approach. To propel the field of animal social networks beyond exploratory analyses and to facilitate the integration of quantitative methods that allow for the testing of ecologically and evolutionarily relevant hypotheses, we review methodological and conceptual advances in network science, which are underutilized in …

Utilization Of The Invasive Alga Gracilaria Vermiculophylla (Ohmi) Papenfuss By The Native Mud Snail Ilyanassa Obsoleta (Say), Michele Guidone, Christine Newton, Carol S. Thornber

Biology Faculty Publications

The recent invasions of the red alga, Gracilaria vermiculophylla, to the Atlantic and Eastern Pacific Oceans have the potential to significantly alter intertidal and subtidal soft sediment communities. In particular, G. vermiculophylla increases habitat complexity and provides a novel hard substrate in an otherwise two dimensional habitat. Following our observations that the native omnivorous mud snail Ilyanassa obsoleta utilizes G. vermiculophylla for egg capsule deposition, our field surveys demonstrated that the in situ abundance of egg capsules on G. vermiculophylla matched abundances on a native alga Ceramium virgatumandwere at least 11–50 times greater than on all other co-occurring macrophytes. Additionally, …

From The Inside Out, And Through., Dominique Ovalle

The Transdisciplinary STEAM+ Journal

These photographs describe “Science” born of consumerism, hijacked by me, economically disenfranchised, or rather—temporarily embarrassed, artist. I was putzing around Malibu—my old college stomping ground, looking for free food; maybe a sample of some gourmet $5 chocolate, and all I got were these photographs.

Notes On Bird Species In Bamboo In Northern Madre De Dios, Peru, Including The First Peruvian Record Of Acre Tody-Tyrant (Hemitriccus Cohnhafti), Michael G. Harvey, Daniel F. Lane, Justin Hite, Ryan S. Terrill, Sheila Figueroa Ramírez, Brian Tilston Smith, John Klicka, Walter Vargas Campos

Occasional Papers of the Museum of Natural Science, Louisiana State University

In the southwestern Amazon Basin, large areas of habitat are comprised predominantly of Guadua bamboo. Many bird species occur in or specialize on Guadua-dominated habitats, but little is known about the taxonomy, distribution, and evolutionary history of this avian assemblage. During 2011, we surveyed the surroundings of Iberia, an area with many large Guadua stands in the southern Peruvian Amazon. We found many Guadua specialist bird species and discovered a surprising Andean element to the local avifauna. We present information on Guadua specialists, Andean species, birds of open habitats, and avian migration and reproduction. We provide accounts for species …

Averting Lemur Extinctions Amid Madagascar's Political Crisis, Christoph Schwitzer, Russell Mittermeier, Steig Johnson, Giuseppe Donati, Mitchell Irwin, Heather Peacock, Jonah Ratsimbazafy, Josia Razafindramanana, Edward E. Louis, Lounes Chikhi, Ian C. Colquhoun, Jennifer Tinsman, Ranier Dolch, Marni Lafleur, Stephen Nash, Erik Patel, Blanchard Randrianambinina, Tove Rasolofoharivelo, Patricia C. Wright

Anthropology Publications

The most threatened mammal group on Earth, Madagascar’s five endemic lemur families (lemurs are found nowhere else), represent more than 20% of the world’s primate species and 30% of family-level diversity. This combination of diversity and uniqueness is unmatched by any other country—remarkable considering that Madagascar is only 1.3 to 2.9% the size of the Neotropics, Africa, or Asia, the other three landmasses where nonhuman primates occur. But lemurs face extinction risks driven by human disturbance of forest habitats. We discuss these challenges and reasons for hope in light of site-specific, local actions proposed in an emergency conservation action plan.

Insights Into The Development And Evolution Of Exaggerated Traits Using De Novo Transcriptomes Of Two Species Of Horned Scarab Beetles, Ian A. Warren, J. Cristobal Vera, Annika Johns, Robert Zinna, James H. Marden, Douglas J. Emlen, Ian Dworkin, Laura C. Lavine

Biological Sciences Faculty Publications

Scarab beetles exhibit an astonishing variety of rigid exo-skeletal outgrowths, known as ‘‘horns’’. These traits are often sexually dimorphic and vary dramatically across species in size, shape, location, and allometry with body size. In many species, the horn exhibits disproportionate growth resulting in an exaggerated allometric relationship with body size, as compared to other traits, such as wings, that grow proportionately with body size. Depending on the species, the smallest males either do not produce a horn at all, or they produce a disproportionately small horn for their body size. While the diversity of horn shapes and their behavioural ecology …

Archaeological Data Provide Alternative Hypotheses On Pacific Herring (Clupea Pallasii) Distribution, Abundance, And Variability, Iain Mckechnie, Dana Lepofsky, Madonna L. Moss, Virginia L. Butler, Trevor J. Orchard, Gary Coupland, Frederick Foster, Megan Caldwell, Ken Lertzman

Anthropology Faculty Publications and Presentations

Over the last century, Pacific herring, a forage fish of tremendous cultural, economic, and ecological importance, has declined in abundance over much of its range. We synthesize archaeological fisheries data spanning the past 10,000 y from Puget Sound in Washington to southeast Alaska to extend the ecological baseline for herring and contextualize the dynamics of modern industrial fisheries. While modern herring populations can be erratic and exhibit catastrophic declines, the archaeological record indicates a pattern of consistent abundance, providing an example of long-term sustainability and resilience in a fishery known for its modern variability. The most parsimonious explanation for the …

A Global Analysis Of The Impacts Of Urbanization On Bird And Plant Diversity Reveals Key Anthropogenic Drivers, Myla F.J. Aronson, Frank A. La Sorte, Charles H. Nilon, Madhusudan Katti, Mark A. Goddard, Christopher A. Lepczyk, Paige S. Warren, Nicholas S.G. Williams, Sarel Cilliers, Bruce Clarkson, Cynnamon Dobbs, Rebecca W. Dolan, Marcus Hedblom, Stefan Klotz, Jip Louwe Kooijmans, Ingolf Kühn, Ian Macgregor-Fors, Mark Mcdonnell, Ulla Mörtberg, Petr Pyšek, Stefan Siebert, Jessica Sushinsky, Peter Werner, Marten Winter

Scholarship and Professional Work - LAS

Urbanization contributes to the loss of the world's biodiversity and the homogenization of its biota. However, comparative studies of urban biodiversity leading to robust generalities of the status and drivers of biodiversity in cities at the global scale are lacking. Here, we compiled the largest global dataset to date of two diverse taxa in cities: birds (54 cities) and plants (110 cities). We found that the majority of urban bird and plant species are native in the world's cities. Few plants and birds are cosmopolitan, the most common beingColumba livia and Poa annua. The density of bird and …