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Carbon Flux Dynamics In High Altitude Peatlands In The Ecuadorian Andes, Maria Elisa Sanchez Garces

Dissertations, Master's Theses and Master's Reports

Although knowledge of peatland CH₄ and CO₂ exchange in temperate mountain ecosystems is available, information about carbon (C) exchange in peatlands of the Andean mountains is limited and these ecosystems may behave differently given the particular characteristics of the Andean tropics. These ecosystems are highly productive and under pressure by grazing. Our first objective was to measure baseline carbon dioxide (CO₂) and methane (CH₄) flux in an undisturbed peatland in Cayambe-Coca National Park. Our second objective was to quantify CO₂ and CH₄ fluxes in an intensively cattle grazed peatland near Antisana Ecological …

Assessing The Impacts Of Climate Change On The Surface Temperature Of Inland Lakes In Michigan, Kaitlin Reinl

Dissertations, Master's Theses and Master's Reports

The aim of this study was to validate and apply a lake model for predicting the susceptibility of small inland lakes in Michigan to changes in thermal regime and increased cyanobacteria growth as a result of future climate conditions. The Freshwater Lake Model was selected, tested for sensitivity to various inputs, and validated through comparison to observed conditions. The sensitivity analysis showed that the lake model was most sensitive to solar radiation, air temperature, and air humidity. Comparison of predicted climate data with observed conditions revealed highly variable climate model error. The lake model validation was conducted using 10 lakes …

You Can't Catch A Fish With A Robot, R. Grant Gilmore Jr.

Gulf and Caribbean Research

Abstract

In this essay I will relate the challenges associated with deep sea ocean exploration as well as the advantages and disadvantages of today’s ocean technologies based on experience with most of these systems. After nearly five decades using robotic vehicles (Remotely Operated Vehicles = ROVs and Autonomous Underwater Vehicles = AUVs) and manned submarines for fish research, I thought it would be appropriate to briefly describe a career spent using these technologies as they were developed. Deep sea ichthyologists cannot effectively catch a swimming fish with a robot even 40 years after the development of the first ROV for …

Marine Infectious Disease Dynamics And Outbreak Thresholds: Contact Transmission, Pandemic Infection, And The Potential Role Of Filter Feeders, Gorka Bidegain, Eric N. Powell, John M. Klinck, Tal Ben-Horin, Eileen E. Hofmann

CCPO Publications

Disease-causing organisms can have significant impacts on marine species and communities. However, the dynamics that underlie the emergence of disease outbreaks in marine ecosystems still lack the equivalent level of description, conceptual understanding, and modeling context routinely present in the terrestrial systems. Here, we propose a theoretical basis for modeling the transmission of marine infectious diseases (MIDs) developed from simple models of the spread of infectious disease. The models represent the dynamics of a variety of host-pathogen systems including those unique to marine systems where transmission of disease is by contact with waterborne pathogens both directly and through filter-feeding processes. …

Effects Of Mountaintop Removal Mining On Population Dynamics Of Stream Salamanders, Sara B. Freytag

Theses and Dissertations--Forestry and Natural Resources

Mountaintop removal mining (MTR) is a notorious stressor of stream ecosystems in the Central Appalachians. Valley fills (VF) lead to reduced occupancy, abundance, and species richness of stream salamanders. Multiple factors may be responsible for these reductions, but specifically habitat fragmentation and degradation may reduce colonization rates and increase local extinction rates. From 2013-2015, repeated counts of salamanders were conducted in stream reaches impacted by MTR/VF and compared to counts in reference reaches to answer the question: do stream salamander population dynamics differ between stream reaches impacted by MTR/VF and reference stream reaches? I also investigated dynamics of stream habitat …

Hawks And Owls, Brian E. Washburn

Wildlife Damage Management Technical Series

Human-Wildlife Conflicts: Hawks and owls can negatively impact a variety of human interests, including important natural resources, livestock and game bird production, human health and safety, and companion animals. Conflicts between raptors and people generally are localized and often site-specific. However, the economic and social impacts to the individuals involved can be severe. Despite the problems they may cause, hawks and owls provide important benefits and environmental services. Raptors are popular with birdwatchers and much of the general public. They also hunt and kill large numbers of rodents, reducing crop damage and other problems.

Damage Identification

Management Methods

Economics

Species …

Species Distribution Modeling Of North American Odonates, Rebecca Beilinson

Library Map Prize

Species distribution modeling, which uses species-environment relationships to predict species’ geographic ranges, is a powerful technique for biogeographical and ecological analysis as well as for conservation planning. However, it has typically been underutilized for invertebrates and for freshwater species, as modeling these groups can pose unique challenges. Here I present methods for modeling odonate distributions and demonstrate these methods for four North American species. I show that incorporating expert-derived range maps as spatial priors can significantly improve model performance as compared to MaxEnt models. I also introduce a new distance to freshwater layer as an environmental variable, and show that …

Tests Of Reproductive Isolation Between The Fishes Fundulus Heteroclitus And F. Grandis, Ruthie E. Barbas

UNF Graduate Theses and Dissertations

The closely related killifishes Fundulus heteroclitus and F. grandis hybridize in a small region where their ranges overlap in coastal northeastern Florida. Hybrids of these species are rare in frequency within the contact zone, suggesting the presence of relatively strong reproductive isolation between these species. The objective of this study was to elucidate barriers to reproduction between F. heteroclitus and F. grandis in the lab, as well as to quantify the relative strengths and contributions of various isolating barriers. Pre-zygotic (mating and fertilization) and post-zygotic (hatching) barriers were investigated by performing a variety of choice and no-choice laboratory mating experiments. …

Structure And Function Of Male Bottlenose Dolphin Alliances In Northeast Florida, Kristin A. Karle

UNF Graduate Theses and Dissertations

Bottlenose dolphins exhibit fission-fusion social systems in which group size and composition change fluidly throughout the day. Societies are typically sexually segregated, and the quality and patterning of individual relationships in this social species shape the social structure of a population. Female dolphins usually have a large network of associates with whom they form recurring moderate bonds, while male associations are highly variable due to their mating strategies. Males employ one of two strategies; males may be solitary, and encounter and herd females individually, while others may form strong bonds with one to two other males and cooperatively herd individual …

Population Sampling Of Chelonians In An Urban Lake In Jonesboro, Craighead County, Arkansas, J. D. Konvalina, C. S. Thigpen, S. E. Trauth

Journal of the Arkansas Academy of Science

We conducted a mark-recapture survey for aquatic turtles in Craighead Forest Lake in Jonesboro (Craighead County, Arkansas). From July 2, 2015 to October 14, 2015, we set six hoop nets, baited with fish parts, at specific shoreline locations around the lake. Traps were set twice a week and checked 12 hours after they were set. Carapace length, carapace width, plastron length, and plastron width were measured for each individual. Each turtle was identified to species and its sex was recorded. We also placed a notch in one or more of its marginal scutes to aid in future identification. Finally, a …

Acanthocephala Of Arkansas, Including New Host And Geographic Distribution Records From Fishes, C. T. Mcallister, D. J. Richardson, M. A. Barger, T. J. Fayton, H. W. Robison

Journal of the Arkansas Academy of Science

Little is known about the spiny- or thorny-headed worms (Phylum Acanthocephala) of Arkansas and there are no summaries on the acanthocephalans of the state. Here, we provide a checklist of the 22 acanthocephalans that occur in Arkansas’ vertebrates based on previously published records and new data presented herein. In addition, we document a new state record as well as 13 new host records for some fish acanthocephalans.

The Ticks (Arachnida: Acari: Ixodida) Of Arkansas, C. T. Mcallister, L. A. Durden, H. W. Robison

Journal of the Arkansas Academy of Science

Although ticks are a nuisance to humans and other animals, they are an important part of the biota of North America. In addition, they are vectors of many tick-borne disease agents that can negatively affect higher vertebrates. In Arkansas, there have been no recent comprehensive summaries of the ticks (Acari: Ixodida) in the last 40+ yrs. Here, we provide a summary of the ticks of the state and note the disease agents they can transmit.

Long-Term Monitoring And Recovery Of A Population Of Alligator Snapping Turtles, Macrochelys Temminckii (Testudines: Chelydridae), From A Northeastern Arkansas Stream, S. E. Trauth, D. S. Siegel, M. L. Mccallum, D. H. Jamieson, A. Holt, J. B. Trauth, H. Hicks, J. W. Stanley, J. Elston, J. J. Kelly, J. D. Konvalina

Journal of the Arkansas Academy of Science

We conducted a mark-recapture study of Alligator Snapping Turtles, Macrochelys temminckii, on Salado Creek (Independence Co., Arkansas) during 10 trapping seasons, which spanned a 20-year period (1995–2015). We trapped a total of 163 Alligator Snapping Turtles during 416 trap nights and recorded a total of 35 recaptures during this study. Both the catch per unit effort (CPUE) and Jolly-Seber approaches demonstrated that this population benefitted from removal of harvest pressure, thus leading to an increase in abundance of Alligator Snapping Turtles in the lower ~5 km of the creek. The CPUE averaged slightly greater than 0.24 (317 trap nights) during …

Gastrointestinal Parasites Of The Northern River Otter, Lontra Canadensis (Carnivora: Mustelidae), From Arkansas, C. T. Mcallister, A. Surf, R. Tumlison, C. R. Bursey, T. J. Fayton

Journal of the Arkansas Academy of Science

No abstract provided.

Seasonal Variation Of Fish And Macroinvertebrate Biomass Spectra In Southern West Virginia Streams, Andrew J. Kirk

Theses and Dissertations

The biomass size spectrum - the power-law scaling relationship between average individual size and total biomass - has often been studied in lake and marine ecosystems, but rarely in lotic systems. The objective of this study was to test for characteristic biomass spectra in small temperate streams. Seasonal fish and macroinvertebrate data, including population abundance and biomass estimates, were collected in three wadeable, southern West Virginia streams from October 2013 to May 2015. Fish abundances were estimated with 3-pass electrofishing (depletion) surveys and individuals were weighed in the field. Macroinvertebrates were collected with a Hess sampler and returned to the …

Molt In Individuals: A Description Of Prealternate Molt Phenology In A Population Of Snowy Plovers In Humboldt County, California, Alexa Dejoannis

Cal Poly Humboldt theses and projects

Molt in birds is an essential physiological process. Intrinsic and extrinsic conditions, such as age, sex, location, or food stress, may cause individual variation in molt phenology. This study describes the timing of prealternate molt in western snowy plovers (Charadrius nivosus nivosus) wintering in Humboldt County, California, USA. Between July 2014 and April 2015, I photographed uniquely marked plovers twice a month and assigned dates of initiation and completion. I modeled sex, age, hatch date, and breeding location as predictors of molt phenology. I observed prealternate molt from October to April, which is earlier than previously described. Males …

End-State Welfarism, Joel Marks

Animal Sentience

Yew-Kwang Ng’s research is the work of an obviously sincere, intelligent, and conscientious animal advocate. But I am unable to accept his starting assumption that animal welfare is an appropriate basis for animal ethics. More specifically I argue that animal welfare as a means to animal liberation is an issue that can be debated, but animal welfare as the ultimate end or goal of animal advocacy is misguided.

Activity Patterns, Home Range, And Microhabitat Selection Of A Terrestrial Turtle (Rhinoclemmys Rubida Perixantha) In A Tropical Dry Forest, Taggert G. Butterfield

All Master's Theses

Turtles are in trouble worldwide, with nearly half recognized by the International Union for Conservation of Nature (IUCN) as needing special protection. The Eurasian pond and Neotropical wood turtles of the family Geoemydidae are the most diverse turtles and comprise ¼ of all turtle species yet basic information on their natural history is lacking. Moreover, seasonal tropical dry forest (SDTF), where many geoemydids exist, is considered the most endangered ecosystem in the world. We investigated the activity patterns, home range size, and microhabitat selection of the Mexican Spotted Wood Turtle (Rhinoclemmys rubida perixantha) in its SDTF habitat by …

Testing The Forage Preference Of The American Pika (Ochotona Princeps) For Use In Connectivity Corridors In The Washington Cascades, Carly Wickhem, Kristina Ernest

All Master's Theses

One of the aims of the Snoqualmie Pass East Project (SPEP) in the Cascades of central Washington is to construct nearly 30 wildlife crossing structures along a 15-mile stretch of Interstate-90. American pikas (Ochotona princeps) are being monitored for the SPEP because they have specific habitat requirements and are poor dispersers. Making the crossing structures “pika-friendly” will encourage these low-mobility animals to use the structures. Recent research suggests that the presence of quality vegetation may help pika populations avoid declines and extirpations, so planting suitable forage within and adjacent to the crossings will be essential. During the summer …

Resolving Gnetum Evolutionary History, Angela Mcfadden

All Master's Theses

Gnetum are non-flowering seed plants of the tropics, indigenous to South America, Africa, and Asia. This group of about 40 species is fascinating to botanists because it shares distinctive morphological characteristics with flowering plants, such as broad leaves, woody stems, and flower-like strobili. There are still questions surrounding the relationships within the genus of Gnetum. With that in mind, I focused my work on generating phylogenetic hypotheses, using two molecular data sets: a concatenation of over 60 different chloroplast genes (66,815 base pairs), and the whole chloroplast genome (128,772 base pairs). This allowed me to compare the two phylogenies …

Nonhuman Mind-Reading Ability, Marthe Kiley-Worthington

Animal Sentience

Harnad (2016) is mistaken that humans are better at mind-reading than other species. Humans have context-independent language, but nonhuman species, especially mammals, have context-dependent nonverbal skills – perceptual, communicative and social -- that can be much keener than our own.

Pain And Fish Welfare, Eliane Gonçalves-De-Freitas

Animal Sentience

The evolutionary approach of Key’s (2016) target article, generically comparing humans with fish of all kinds, is simplistic. The author ignores published research on structural and molecular aspects of pain in fish. The target article reads more like a selective polemic against fish welfare than an even-handed analysis.

Leaving The Door Open For Fish Pain: Evolutionary Convergence And The Utility Of ‘Just-So Stories’, David B. Edelman

Animal Sentience

Key argues that fish do not experience pain because they lack the necessary (but not necessarily sufficient) brain structures and associated functional circuitry to engender such conscious percepts. I propose that fish pain may be dependent on neuroanatomical regions and pathways that are structurally and/or functionally analogous — but not strictly homologous — to well-characterized mammalian substrates of pain. An example is the convergent appearance of the complex, single-compartment eye across invertebrate and vertebrate phylogeny. Structural-functional convergence is ubiquitous in evolution. Comparative inferences and correlative lines of evidence play an important role in building evolutionary arguments. The dismissal of the …

Animal Welfare And Animal Rights, M.E. Rolle

Animal Sentience

This overview of Broom’s book, Sentience and Animal Welfare (2014), considers the role the book could play in the animal rights debate. In a thoroughly researched and objectively presented text, Broom lays out information that could place doubt in the minds of decision-makers. By highlighting not just the ways animals resemble humans, but also the ways humans resemble animals, Broom shines a light on a solidly grey area in the animal rights debate.

The Object Of Grief, Clark Glymour

Animal Sentience

King’s new book is a wonderful collection of diverse anecdotes illustrating the variety of animal practices that are convincing illustrations of grief. Those who want scientific arguments for that conclusion should, however, read elsewhere.

Evidence For Animal Grief?, Carolyn Ristau

Animal Sentience

The nature of evidence appropriate to the study of animal emotion (and cognition) is discussed in this review with reference to Barbara King’s book. How Animals Grieve is beautifully written, but it intermixes examples meeting King’s criteria for evidence of grief with other poignant but far less convincing examples. Yet, as noted earlier by Griffin (1958/1974), “Excessive caution can sometimes lead one as far astray as rash enthusiasm.” King cites strong evidence from long-term scientific field studies, often involving known individuals; from videotapes; from convergent evidence in neurophysiological studies; and, notwithstanding possible emotional bias, from animals living closely with humans. …

Understanding Emotional Suffering, Barbara J. King

Animal Sentience

In responding to insightful commentaries from 7 scholars, for which I am grateful, I offer new thoughts on whether animals can conceptualize and express signs of grief. I also discuss why I included both weak and strong examples of animal mourning, and how this work may help us think about enhanced welfare for animals, including freedom from emotional suffering.

Vegetation Dynamics And Nitrogen Cycling Responses To Simulated Emerald Ash Borer Infestation In Fraxinus Nigra-Dominated Wetlands Of Upper Michigan, Usa, Joshua Davis

Dissertations, Master's Theses and Master's Reports

Throughout many North American forests, the invasive emerald ash borer (EAB, Agrilus planipennis Fairmaire (Coleoptera: Buprestidae)) is a significant threat to biodiversity and ecosystem processes. The fate of Fraxinus nigra Marshall (black ash) is of particular concern, as it is frequently a dominant canopy species across much of its range. A multiyear manipulative study was conducted to investigate the potential impacts of EAB on vegetation dynamics and nitrogen (N) cycling in nine F. nigra-dominated wetlands of Upper Michigan, USA. The effects of early- and late-stage infestations were simulated by girdling (‘Girdle’) or felling (‘Ash-Cut’) all ash stems greater than …

Calculating The Rate Of Spread Of Phragmites Australis In Summit County, Oh Using Gis, Aaron W. Baumgardner

Williams Honors College, Honors Research Projects

Phragmites australis subspecies australis is a non-native species that forms dense monocultures and negatively affects wetland ecosystems. In this study, Geographic Information System (GIS) was used to analyze and compare intrinsic rates of growth between Phragmites populations located along highways and those within parks in Summit County, Ohio. No significant difference in expansion rate was seen between the two population types during a 4-year time period, although the average expansion rate was higher in park populations. Obstruction by roads may have prevented highway populations from expanding radially, while 2/3 of park populations were unobstructed in terms of physical barriers to …

Effects Of Invasion Timing In A One-Dimensional Model Of Competing Species With An Infectious Disease, Eliza Jacops

Williams Honors College, Honors Research Projects

In combining two classes of models, we are able to analyze the dynamics of two species that compete for the same resources while fighting a disease. The native species is the disease host and the invasive species enters their habitat and encounters the disease for the first time. Their natural response is to evolve resistance to the disease, and this can assist in their invasion of the natives' habitat. We find conditions for coexistence of the two species, conditions under which an invasion would succeed and wipe out all native individuals, and conditions under which the invasion fails. We explore …