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Articles 10501 - 10530 of 19741
Full-Text Articles in Entire DC Network
A Life-History Perspective On The Demographic Drivers Of Structured Population Dynamics In Changing Environments, David N. Koons, David T. Iles, Michael Schaub, Hal Caswell
A Life-History Perspective On The Demographic Drivers Of Structured Population Dynamics In Changing Environments, David N. Koons, David T. Iles, Michael Schaub, Hal Caswell
Wildland Resources Faculty Publications
Current understanding of life-history evolution and how demographic parameters contribute to population dynamics across species is largely based on assumptions of either constant environments or stationary environmental variation. Meanwhile, species are faced with non-stationary environmental conditions (changing mean, variance, or both) created by climate and landscape change. To close the gap between contemporary reality and demographic theory, we develop a set of transient life table response experiments (LTREs) for decomposing realised population growth rates into contributions from specific vital rates and components of population structure. Using transient LTREs in a theoretical framework, we reveal that established concepts in population biology …
Utilitarianism Generalized To Include Animals, Yew-Kwang Ng
Utilitarianism Generalized To Include Animals, Yew-Kwang Ng
Animal Sentience
In response to the seventeen commentaries to date on my target article on reducing animal suffering, I propose that the term “welfarism” (when used pejoratively by animal advocates) should be qualified as “anthropocentric welfarism” so as to leave “welfarism” simpliciter to be used in its generic sense of efforts to improve conditions for those who need it. Welfarism in this benign sense — even in its specific utilitarian form (maximizing the sum total of net welfare) with long-term future effects and effects on others (including animals) appropriately taken into account — should be unobjectionable (even if not considered sufficient by …
Molecular Response Of Spartina Alterniflora To The Deepwater Horizon Oil Spill, Mariano Alvarez
Molecular Response Of Spartina Alterniflora To The Deepwater Horizon Oil Spill, Mariano Alvarez
USF Tampa Graduate Theses and Dissertations
Although the “genome as a blueprint” metaphor has been pervasive in biology, recent advances in molecular biology have revealed a complex network of regulatory machinery that dynamically regulated molecular processes in response to environmental conditions. However, these patterns, as well as the evolutionary processes that underlie them, remain understudied in natural conditions. In 2010, the Deepwater Horizon oil spill released an estimated 4.9 million barrels of oil into the Gulf of Mexico, making landfall on salt marsh habitat dominated by the foundation species Spartina alterniflora. Despite the severe impacts to phenotype and fitness, S. alterniflora proved remarkably resilient in …
Cross-Species Mind-Reading, Stevan Harnad
Cross-Species Mind-Reading, Stevan Harnad
Animal Sentience
We can never be sure anyone else is sentient. But we can be sure enough in the case of other people, nonhuman primates, mammals, birds, fish, lower vertebrates and invertebrates as to make scepticism academic and otiose (not to mention monumentally cruel). The only genuinely uncertain kinds of cases are jellyfish, microbes and plants. The rest is not about whether but what they are feeling.
Influence Of Free Water Availability On A Desert Carnivore And Herbivore, Bryan M. Kluever, Eric M. Gese, Stephen Dempsey
Influence Of Free Water Availability On A Desert Carnivore And Herbivore, Bryan M. Kluever, Eric M. Gese, Stephen Dempsey
Wildland Resources Faculty Publications
Anthropogenic manipulation of finite resources on the landscape to benefit individual species or communities is commonly employed by conservation and management agencies. One such action in arid regions is the construction and maintenance of water developments (i.e., wildlife guzzlers) adding free water on the landscape to buttress local populations, influence animal movements, or affect distributions of certain species of interest. Despite their prevalence, the utility of wildlife guzzlers remains largely untested. We employed a before–after control-impact (BACI) design over a 4-year period on the US Army Dugway Proving Ground, Utah, USA, to determine whether water availability at wildlife guzzlers influenced …
Conservation Genetics And Mark-Recapture Monitoring Of The Rare Pigeon Mountain Salamander (Plethodon Petraeus) Within A Highly Restricted Range, Kate Donlon
Master of Science in Integrative Biology Theses
Globally, amphibian species are experiencing declines at an alarming rate largely due to habitat loss, disease and climate change. Species with limited ranges are at an elevated risk of a significant decline in population numbers and extinction because of the inability to avoid and recover from these impacts. Long-term management plans are critical for conservation of species with small ranges; however, the knowledge required to develop effective plans is absent from the literature for many species. One such species is the Pigeon Mountain Salamander. The distribution of the Pigeon Mountain Salamander, Plethodon petraeus, is restricted to roughly 17 kilometers …
Drivers Of Immune Cost And Implications For Host Protection From Parasites, Amber Jasmine Brace
Drivers Of Immune Cost And Implications For Host Protection From Parasites, Amber Jasmine Brace
USF Tampa Graduate Theses and Dissertations
Among species, populations, and individuals, there exists a tremendous amount of variation in how hosts respond to, and are thus protected from parasites. Such variation inevitably affects host-parasite dynamics and ultimately how parasites will move through and evolve in communities. A likely factor in the diversity of immune responses seen in nature are the costs associated with activation of the immune system upon exposure to parasites. Costs can manifest in many ways, including changes in resource usage or metabolism, self-damage from inflammatory reactions, lost opportunities (e.g., foraging reproduction), and often as tradeoffs with other physiological processes. However, we do not …
My Orgasms Cannot Be Traded Off Against Others’ Agony, Stevan Harnad
My Orgasms Cannot Be Traded Off Against Others’ Agony, Stevan Harnad
Animal Sentience
Only I can calculate my own welfare as net pleasure minus pain. No one else can do that calculation for me – nor for a population, and especially not averaging across some individuals’ pleasure and other individuals’ pain. Pain and pleasure are incommensurable and only pain matters morally. To maximize welfare is to minimize pain.
In Praise Of Fishes: Précis Of What A Fish Knows (Balcombe 2016), Jonathan Balcombe
In Praise Of Fishes: Précis Of What A Fish Knows (Balcombe 2016), Jonathan Balcombe
Animal Sentience
Our relationship to fishes in the modern era is deeply problematic. We kill and consume more of them than any other group of vertebrates. At the same time, advances in our knowledge of fishes and their capabilities are gaining speed. Fish species diversity exceeds that of all other vertebrates combined, with a wide range of sensory adaptations, some of them (e.g., geomagnetism, water pressure and movement detection, and communication via electricity) alien to our own sensory experience. The evidence for pain in fishes (despite persistent detractors) is strongly supported by anatomical, physiological and behavioral studies. It is likely that fishes …
Sentience As Moral Consideration And Disvalue In Nature, Daniel Dorado
Sentience As Moral Consideration And Disvalue In Nature, Daniel Dorado
Animal Sentience
In recent work Ng assumes that it is good to engage in activities aimed at promoting ecosystem conservation. The only way Ng can derive this from the axiology he assumes (the view that wellbeing is the only intrinsically valuable or disvaluable thing) would be to assume that ecosystem conservation would benefit the individuals involved. This can be so as long as value prevails over disvalue in the target environments. Ng seems to assume this is indeed the case, but he does not explain why, and it is a claim that goes against the conclusions he has argued for previously (Ng …
Inalienable Rights And Pluralism In Animal Advocacy, Beril Sözmen
Inalienable Rights And Pluralism In Animal Advocacy, Beril Sözmen
Animal Sentience
I comment on two of Ng’s suggestions. There is a lack of support for his suggestion that some experiments on individual animals will be useful for future success, so they should be permitted. I also question his recommendation that animal advocacy should focus on farmed animals first and wild animals later. The lack of solid support for why this would be a more effective strategy leads me to suggest a more pluralistic support of a variety of types of advocacy.
Biofouling Management In The Pacific Northwest And Predation On Native Versus Non-Native Ascidians, Erin Suzanne Kincaid
Biofouling Management In The Pacific Northwest And Predation On Native Versus Non-Native Ascidians, Erin Suzanne Kincaid
Dissertations and Theses
Marine non-native species threaten economic and environmental health, making it crucial to understand factors that make them successful. Research on these species, therefore, allows for greater preparedness and informed management of biological invasions and increases understanding of elements structuring biological communities. Among the marine non-native species, and particularly the fouling community, non-native ascidians are a taxon of particular concern because they can crowd out native benthic species and smother mariculture products. This thesis addresses management for ascidians and other fouling organisms and includes research on the invasiveness of this taxon in addition to the invasibility of recipient fouling communities. On …
Changing Attitudes Towards Animals In The Wild And Speciesism, Oscar Horta
Changing Attitudes Towards Animals In The Wild And Speciesism, Oscar Horta
Animal Sentience
I argue that despite Ng’s claim that we should postpone the defense of those animals that live in the wild, we do have reasons to start spreading concern for them now. We can do it by (i) changing public attitude by heightening awareness of speciesism, by which we will also challenge animal exploitation; and (ii) by disseminating information about the situation of animals in the wild.
Automated Detection Of Deep-Sea Animals, Dallas J. Hollis, Duane Edgington, Danelle Cline
Automated Detection Of Deep-Sea Animals, Dallas J. Hollis, Duane Edgington, Danelle Cline
STAR Program Research Presentations
The Monterey Bay Aquarium Research Institute routinely deploys remotely operated underwater vehicles equipped with high definition cameras for use in scientific studies. Utilizing a video collection of over 22,000 hours and the Video Annotation and Reference System, we have set out to automate the detection and classification of deep-sea animals. This paper serves to explore the pitfalls of automation and suggest possible solutions to automated detection in diverse ecosystems with varying field conditions. Detection was tested using a saliency-based neuromorphic selective attention algorithm. The animals that were not detected were then used to tune saliency parameters. Once objects are detected, …
On-Farm Qualitative Behaviour Assessment Of Dairy Goats In Different Housing Conditions, Lilia Grosso, Monica Battini, Françoise Wemelsfelder, Sara Barbieri, Michela Minero, Emanuela Dalla Costa, Silvana Mattiello
On-Farm Qualitative Behaviour Assessment Of Dairy Goats In Different Housing Conditions, Lilia Grosso, Monica Battini, Françoise Wemelsfelder, Sara Barbieri, Michela Minero, Emanuela Dalla Costa, Silvana Mattiello
Sentience Collection
This study reports the results of the first investigation on the use of Qualitative Behaviour Assessment (QBA) in dairy goats, using a fixed-list of descriptors specifically developed for this species. It aimed to verify whether QBA can be reliably used by observers with different backgrounds to differentiate between the emotional states of goats kept under different environmental conditions. Two trained observers simultaneously assessed 16 dairy goat farms (8 “Housed” (H) farms, where animals were observed in free stall pens, and 8 “Pasture” (P) farms, where animals were observed in open ranges), using a list of 16 QBA descriptors that were …
Impacts Of Habitat Fragmentation On The Cranial Morphology Of A Threatened Desert Fish (Cyprinodon Pecosensis), Michael Chaise Gilbert
Impacts Of Habitat Fragmentation On The Cranial Morphology Of A Threatened Desert Fish (Cyprinodon Pecosensis), Michael Chaise Gilbert
Masters Theses & Specialist Projects
Drastic alterations to the North American Southwest’s hydrology have highly influenced resident fish communities. In New Mexico and Texas, the Pecos River has been severely altered as a result of water manipulation, isolating backwaters and various habitats that were once connected to the main river. Cyprinodon pecosensis (Pecos pupfish) has been highly impacted due to the effects of anthropogenic water manipulation, as well as species introductions. Cyprinodon pecosensis populations have become isolated and scattered, residing in sinkholes, remnant lakes, and static backwaters, thus creating numerous micropopulations. The purpose of this study was to assess the morphological variation in cranial features …
The Maintenance Of Phenotypic Divergence Through Sexual Selection: An Experimental Study In Barn Swallows Hirundo Rustica, Rebecca Safran, Yoni Vortman, Brittany R. Jenkins, Joanna K. Hubbard, Matt Wilkins, Rachel J. Bradley, Arnon Lotem
The Maintenance Of Phenotypic Divergence Through Sexual Selection: An Experimental Study In Barn Swallows Hirundo Rustica, Rebecca Safran, Yoni Vortman, Brittany R. Jenkins, Joanna K. Hubbard, Matt Wilkins, Rachel J. Bradley, Arnon Lotem
School of Biological Sciences: Faculty Publications
Previous studies have shown that sexual signals can rapidly diverge among closely related species. However, we lack experimental studies to demonstrate that differences in trait-associated reproductive performance maintain sexual trait differences between closely related populations, in support for a role of sexual selection in speciation. Populations of Northern Hemisphere distributed barn swallows Hirundo rustica are closely related, yet differ in two plumage-based traits: ventral color and length of the outermost tail feathers (streamers). Here we provide experimental evidence that manipulations of these traits result in different reproductive consequences in two subspecies of barn swallow: (H. r. erythrogaster in North …
Endless Symbioses Most Intricate, W. John Hayden
Endless Symbioses Most Intricate, W. John Hayden
Biology Faculty Publications
Orchids, such as our Wildflower of the Year for 2016, Downy Rattlesnake Plantain (Goodyera pubescens) (Fig. 1), exemplify the interconnectedness of life on Earth. As would be the case for many kinds of plants, pollination comes readily to mind as a prominent example of mutualistic symbiosis. Downy Rattlesnake Plantain is pollinated by bumblebees and other native bees. The bees gain nectar and the orchid gets an efficient means to move pollen from one flower to another; each organism gains benefit from the interaction, the very definition of mutualism. Pollination by bees is widespread among the orchids, but there …
Proximate And Evolutionary Causes Of Sexual Size Dimorphism In The Crab Spider Mecaphesa Celer, Marie Claire Chelini
Proximate And Evolutionary Causes Of Sexual Size Dimorphism In The Crab Spider Mecaphesa Celer, Marie Claire Chelini
School of Biological Sciences: Dissertations, Theses, and Student Research
Animal species’ body sizes result from the balance between selection for survival and selection for reproduction. In species with sexual size dimorphism (SSD), this balance differs between females and males, resulting in distinct sizes despite similar constraints. I used an integrative approach to understand how sexual section, and differences in developmental trajectories and metabolic physiology, resulted in the female biased SSD of the crab spider Mecaphesa celer (Thomisidae). SSD in spiders is often assumed to be a consequence of selection for early male maturation, which should provide males with additional mating opportunities. My results allow us to discard mate …
Why We Should Not Postpone Awareness Of Wild Animal Suffering, Catia Faria
Why We Should Not Postpone Awareness Of Wild Animal Suffering, Catia Faria
Animal Sentience
Ng (2016) restates his case for the importance of wild animal suffering (1995). Nevertheless, he suggests that the most effective way to reduce nonhuman suffering overall is to give short-term priority to the suffering of farmed animals. It is not clear that Ng puts forward a successful case. Our current efforts to prevent animal suffering overall should also include raising awareness of wild animal suffering now as well as promoting research on safe and feasible ways to prevent wild animal suffering in the future.
From Tolerance To Transmission: Linking Within-Individual To Community-Level Disease Processes, Sarah Catherine Burgan
From Tolerance To Transmission: Linking Within-Individual To Community-Level Disease Processes, Sarah Catherine Burgan
USF Tampa Graduate Theses and Dissertations
Hosts have two main strategies for coping with infections: resistance and tolerance. Resistance is aimed at preventing or eliminating parasites, whereas the goal of tolerance is to maintain performance regardless of parasite burden. The balance between resistance and tolerance within a host may mediate host competence, or the propensity of a host to infect other hosts or vectors. Hosts with high tolerance and low resistance to an infection, for instance, may be highly competent and possess the greatest potential to act as superspreaders. These superspreading hosts will contribute disproportionately to transmission, thus posing the greatest risk to other hosts within …
Scorpions Of The Horn Of Africa (Arachnida, Scorpiones). Part V. Two New Species Of Neobuthus Hirst, 1911 (Buthidae), From Ethiopia And Eritrea, Graeme Lowe, František Kovařík
Scorpions Of The Horn Of Africa (Arachnida, Scorpiones). Part V. Two New Species Of Neobuthus Hirst, 1911 (Buthidae), From Ethiopia And Eritrea, Graeme Lowe, František Kovařík
Euscorpius
New information about the taxonomy and distribution of the genus Neobuthus Hirst, 1911 (Scorpiones: Buthidae) is presented, based on materials recently collected from Ethiopia and Eritrea. Emended diagnoses are provided for the genus Neobuthus, and for the species N. awashensis Kovařík et Lowe, 2012 and N. cloudsleythompsoni Lourenço, 2001. New records are given for N. awashensis in Ethiopia. We redescribe N. cloudsleythompsoni, and we describe two additional new species: N. eritreaensis sp. n. (the first record of the genus from Eritrea) and N. kutcheri sp. n. (southern Ethiopia, Somali State). We include a key …
The Importance Of Ants In Cave Ecology, With New Records And Behavioral Observations Of Ants In Arizona Caves, Robert B. Pape
The Importance Of Ants In Cave Ecology, With New Records And Behavioral Observations Of Ants In Arizona Caves, Robert B. Pape
International Journal of Speleology
The importance of ants as elements in cave ecology has been mostly unrecognized. A global list of ant species recorded from caves, compiled from a review of existing literature, is presented. This paper also reviews what is currently known about ants occurring in Arizona (USA) caves. The diversity and distribution represented in these records suggests ants are relatively common cave visitors (trogloxenes). A general utilization of caves by ants within both temperate and tropical latitudes may be inferred from this combined evidence. Observations of ant behavior in Arizona caves demonstrate a low level and sporadic, but persistent, use of these …
Range-Wide Patterns Of Geographic Variation In Songs Of Golden-Crowned Sparrows (Zonotrichia Atricapilla), Daizaburo Shizuka, Glen Chilton, M Ross Lein
Range-Wide Patterns Of Geographic Variation In Songs Of Golden-Crowned Sparrows (Zonotrichia Atricapilla), Daizaburo Shizuka, Glen Chilton, M Ross Lein
Papers in Behavior in Biological Sciences
Discrete geographic variation, or dialects, in songs of songbirds arise as a consequence of complex interactions between ecology and song learning. Four of the five species of Zonotrichia sparrows, including the model species White-crowned Sparrow (Z. leucophrys), have been studied with respect to the causes and consequences of geographic variation in song. Within White-crowned Sparrows, subspecies that migrate farther have larger range size of dialects. Here, we assessed geographic patterns of song variation in the fifth species of this genus, the Golden-crowned Sparrow (Z. atricapilla). We analyzed field-recorded songs from 2 sampling periods (1996–1998 and 2006–2013) covering most of its …
Range-Wide Patterns Of Geographic Variation In Songs Of Golden-Crowned Sparrows (Zonotrichia Atricapilla), Daizaburo Shizuka, M Ross Lein, Glen Chilton
Range-Wide Patterns Of Geographic Variation In Songs Of Golden-Crowned Sparrows (Zonotrichia Atricapilla), Daizaburo Shizuka, M Ross Lein, Glen Chilton
School of Biological Sciences: Faculty Publications
Discrete geographic variation, or dialects, in songs of songbirds arise as a consequence of complex interactions between ecology and song learning. Four of the five species of Zonotrichia sparrows, including the model species White-crowned Sparrow (Z. leucophrys), have been studied with respect to the causes and consequences of geographic variation in song. Within White-crowned Sparrows, subspecies that migrate farther have larger range size of dialects. Here, we assessed geographic patterns of song variation in the fifth species of this genus, the Golden-crowned Sparrow (Z. atricapilla). We analyzed field-recorded songs from 2 sampling periods (1996–1998 and 2006–2013) …
Optimizing Methods For Extraction Of Organic Compounds From Molluscan Shells, Kaydee Jo West
Optimizing Methods For Extraction Of Organic Compounds From Molluscan Shells, Kaydee Jo West
USF Tampa Graduate Theses and Dissertations
Mollusk shells contain proteins within and between the crystals of calcium carbonate. These organic molecules play an important role in biomineralization and shell function, and their stable isotope ratios of carbon and nitrogen are also thought to record important ecological information about the animal's diet and nutrient sources. These proteins can be preserved for millions of years, offering potential insight into pre-anthropogenic ecological conditions. However, shell organics in older shells are typically recovered in reduced abundances due to leaching and remaining organics are often converted from insoluble proteins to soluble, free amino acids, making them difficult to detect and recover. …
Marine Mammal Behavior: A Review Of Conservation Implications, Philippa Brakes, Sasha R. X. Dall
Marine Mammal Behavior: A Review Of Conservation Implications, Philippa Brakes, Sasha R. X. Dall
Social Behavior Collection
The three orders which comprise the extant marine mammals exhibit a wide range of behaviors, varying social structures, and differences in social information use. Human impacts on marine mammals and their environments are ubiquitous; from chemical and noise pollution, to marine debris, prey depletion, and ocean acidification. As a result, no marine mammal populations remain entirely unaffected by human activities. Conservation may be hindered by an inadequate understanding of the behavioral ecology of some of these species. As a result of social structure, social information use, culture, and even behavioral syndromes, marine mammal social groups, and populations can be behaviorally …
Freshwater Metaviromics And Bacteriophages: A Current Assessment Of The State Of The Art In Relation To Bioinformatic Challenges, Katherine Bruder, Kema Malki, Alexandria Cooper, Emily Sible, Jason W. Shapiro, Siobhan C. Watkins, Catherine Putonti
Freshwater Metaviromics And Bacteriophages: A Current Assessment Of The State Of The Art In Relation To Bioinformatic Challenges, Katherine Bruder, Kema Malki, Alexandria Cooper, Emily Sible, Jason W. Shapiro, Siobhan C. Watkins, Catherine Putonti
Bioinformatics Faculty Publications
Advances in bioinformatics and sequencing technologies have allowed for the analysis of complex microbial communities at an unprecedented rate. While much focus is often placed on the cellular members of these communities, viruses play a pivotal role, particularly bacteria-infecting viruses (bacteriophages); phages mediate global biogeochemical processes and drive microbial evolution through bacterial grazing and horizontal gene transfer. Despite their importance and ubiquity in nature, very little is known about the diversity and structure of viral communities. Though the need for culture-based methods for viral identification has been somewhat circumvented through metagenomic techniques, the analysis of metaviromic data is marred with …
Status And Management Of Non-Native Plant Invasion In Three Of The Largest National Parks In The United States, Scott R. Abella, Nicholas A. Fisichelli, Sarah M. Schmid, Teague M. Embrey, Debra Hughson, Jane Cipra
Status And Management Of Non-Native Plant Invasion In Three Of The Largest National Parks In The United States, Scott R. Abella, Nicholas A. Fisichelli, Sarah M. Schmid, Teague M. Embrey, Debra Hughson, Jane Cipra
Life Sciences Faculty Research
Globally, invasion by non-native plants threatens resources that nature reserves are designated to protect. We assessed the status of non-native plant invasion on 1,662, 0.1-ha plots in Death Valley National Park, Mojave National Preserve, and Lake Mead National Recreation Area. These parks comprise 2.5 million ha, 23% of the national park land in the contiguous USA. At least one non-native species inhabited 82% of plots. Thirty-one percent of plots contained one non-native species, 30% two, 17% three, and 4% four to ten non-native species. Red brome (Bromus rubens), an ‘ecosystem engineer’ that alters fire regimes, was most widespread, …
The North American Grouse: Their Biology And Behavior, Paul A. Johnsgard
The North American Grouse: Their Biology And Behavior, Paul A. Johnsgard
Zea E-Books Collection
The ten currently recognized species of grouse in North America have played an important role in America’s history, from the famous but ill-fated heath hen, a primary source of meat for the earliest New England immigrants, to the ruffed grouse, currently one of the most abundant and soughtafter upland game birds in more than 40 states and provinces. This book summarizes the ecology, reproductive biology, and social behavior of all ten of the extant North American grouse species. It also describes the current status of grouse populations, some of which are perilously close to extinction. The social behavior of grouse …