Digital Commons Network^™

Considering Side Biases In Vigilance And Fear, Lesley J. Rogers

Animal Sentience

Measures of vigilance and fear might be more consistently associated if side biases are taken into account, because the right side of the brain is specialised to detect predators and to express fear responses. In species with eyes positioned laterally and with relatively small binocular fields, this brain asymmetry is manifested as eye preferences because each eye sends most of its input to be processed in the opposite side of the brain. Hence, responses elicited by stimuli on the animal’s left side are more likely be associated with fear than are responses to the same stimuli on the animal’s right …

Cautions About Precautions, Jay R. Stauffer Jr.

Animal Sentience

Assuming an animal to be sentient in the absence of conclusive evidence to the contrary is an extreme position, hence it should not and could not be the default assumption. Birch explains how the precautionary principle may be used to substantiate decisions to give the animal the benefit of doubt. Although I am reluctant to accept all of his points, Birch has provided an excellent argument for the use of the precautionary principle for the detection of animal sentience. I agree that more research is needed to refine and understand this relationship.

Raising The Moral Consciousness Of Science, Bernard Rollin

Animal Sentience

Precaution on behalf of sentient animals should not be tempered by the questionable principle of the amorality of science.

Not Statistically Significant, But Still Scientific, Rachael L. Brown

Animal Sentience

Birch’s formulation is persuasive but not nuanced enough to capture at least one situation where it is reasonable to invoke the precautionary principle (PP): when we have multiple, weak, but convergent, lines of evidence that a species is sentient, but no statistically significant evidence of a single credible indicator of sentience within the order as required by BAR. I respond to the worry that if we include such cases in our framework for applying the PP, we open ourselves to the charge of being “unscientific.”

The Precautionary Principle: A Cautionary Note, Robert C. Jones

Animal Sentience

The precautionary principle regarding animal sentience is often used in decision-making about human actions that may cause harm to nonhuman animals. Birch (2017) develops an account of the precautionary principle requiring two pragmatic rules for its implementation. I support Birch's proposal but offer a cautionary note about relying on precautionary principles if one's ultimate goal is to emancipate animals from human domination.

Will The Precautionary Principle Broaden Acceptance Of Animal Sentience?, Simon Leadbeater

Animal Sentience

Birch uses existing practice to develop a formal Animal Sentience Precautionary Principle (ASPP), which he hopes will become more widely adopted and improve animal welfare outcomes. Birch considers the assumption that all animals are sentient to be extreme. Despite its merits, Birch’s ASPP remains human-centred.

Red Snapper Distribution On Natural Habitats And Artificial Structures In The Northern Gulf Of Mexico, Mandy Karnauskas, John F. Walter Iii, Matthew D. Campbell, Adam G. Pollack, J. Marcus Drymon, Sean P. Powers

University Faculty and Staff Publications

In 2011, an intensive, multiple-gear, fishery-independent survey was carried out in the northern Gulf of Mexico (GOM) to collect comprehensive age and length information on Red Snapper Lutjanus campechanus. Based on this synoptic survey, we produced a spatial map of Red Snapper relative abundance that integrates both gear selectivity effects and ontogenetically varying habitat usage. Our methodology generated a spatial map of Red Snapper at a 10-km2 grid resolution that is consistent with existing knowledge of the species: Red Snapper occurred in relatively high abundances at depths of 50–90 m along the coasts of Texas and Louisiana and in smaller, …

Pteropus Voeltzkowi And The Understory: A Study Of The Behavioral Impacts Of The Pemba Flying Fox On The Vegetation And Soil Quality Of Pemba Island, Lea Davidson

Independent Study Project (ISP) Collection

This study examines the impact of Pteropus voeltzkowi , colloquially known as the Pemba Flying Fox, on biodiversity and health of the forest ground layer. Known to serve as reforesters, high concentrations of both fruit seeds and nutrient dense guano are introduced into specific environmental locations due to the bat's behavioral patterns. Working around two roost locations, one in Ngezi Forest and the other at the Kidike conservation site near Mjini Ole, diversity of juvenile vegetation was measured and quantified. In a laboratory setting, soil samples from both sites were analyzed for impacts of guano concentration on soil chemical properties. …

The Effects Of Thermal Stress On Fluorescent Protein Expression In An Indo-Pacific Scleractinian Coral Species, Acropora Tenuis, Anna Knochel

Independent Study Project (ISP) Collection

The scleractinian coral species that so heavily define tropical coral reefs are increasingly threatened by anthropogenic global warming. Rising sea surface temperatures in combination with light stress causes the photosynthetic breakdown of the coral’s algal symbiont, Symbiodinium. Corals have developed a number of physiological responses to handle acute stressors, such as the production of ultraviolet-protecting amino acids, heat shock proteins, the ability to shift symbionts, and the production of fluorescent proteins. The latter has been thought to play a photoprotective role in the coral holobiont, and studies have shown evidence that corals orient these pigments to divert harmful light away …

Investigating The Effects Of Changes In Light Quality On Different Life History Stages Of Seagrasses, Simone Strydom

Theses: Doctorates and Masters

Seagrass meadows provide crucial ecosystem services to the coastal zone but globally are threatened. Seagrass loss to date has mainly been attributed to anthropogenic activities that reduce light quantity, such as dredging, declining water quality from urban and agricultural run-off and eutrophication. However, light quality (wavelengths of light) is also altered by these anthropogenic stressors as well as natural events. This study consisted of three main components: (1) characterising light quality to which seagrasses are exposed across a local natural estuarine-ocean gradient and with a human impact pressure; (2) the influence of monochromatic light quality (blue λ=451 nm; green λ=522 …

Ecology Of Savanna Ecosystems In Indonesia, Sutomo

Theses: Doctorates and Masters

Tropical savannas in South East Asia are important yet understudied ecosystems. In fact, the description of savanna is limited in the Indonesian Archipelago, a region which, based on climate alone, would be expected to have mostly forest. In this thesis, I compared and contrasted the vegetation characteristics of four savannas in the wetter part of the Indonesian archipelago (Java – Bali – Lombok) to understand how fire and grazing influence their dynamics, and searched for evidence of savanna origins, maintenance, invasion by exotic/woody species and possible ecosystem transitions. Vegetation surveys, remote sensing techniques and statistical models were used to spatially …

Habitat Usage Of Tri-Colored Bats (Perimyotis Subflavus) In Western Kentucky And Tennessee Post-White Nose Syndrome, Katherine Schaefer

Murray State Theses and Dissertations

The tri-colored bat (Perimyotis subflavus) has declined severely across its range since 2006 due to white nose syndrome, a fungal disease causing massive bat mortality in North America. My objective was to determine distinguishing characteristics of roost trees and habitat used by tri-colored bats so that the species’ needs can be considered in management plans. I mist-netted for tri-colored bats in western Kentucky and Tennessee during the summers of 2015 and 2016, and attached a radio transmitter to each captured adult bat. I tracked 15 bats to their day roosts and collected habitat data at 38 roost areas …

First Circumglobal Assessment Of Southern Hemisphere Humpback Whale Mitochondrial Genetic Variation And Implications For Management, Howard C. Rosenbaum, Francine Kershaw, Martín Mendez, Cristina Pomilla, Matthew S. Leslie, Ken P. Findlay, Peter B. Best, Timothy Collins, Michel Vely, Marcia H. Engel, Robert Baldwin, Gianna Minton, Michael Meÿer, Lilian Flórez-González, M. Michael Poole, Nan Hauser, Claire Garrigue, Muriel Brasseur, John Bannister, Megan Anderson, Carlos Olavarría, C. Scott Baker

Research outputs 2014 to 2021

The description of genetic population structure over a species' geographic range can provide insights into its evolutionary history and also support effective management efforts. Assessments for globally distributed species are rare, however, requiring significant international coordination and collaboration. The global distribution of demographically discrete populations for the humpback whale Megaptera novaeangliae is not fully known, hampering the definition of appropriate management units. Here, we present the first circumglobal assessment of mito - chondrial genetic population structure across the species' range in the Southern Hemisphere and Arabian Sea. We combine new and existing data from the mitochondrial (mt)DNA control region that …

Biodiversity Monitoring Using Environmental Dna: Can It Detect All Fish Species In A Waterbody And Is It Cost Effective For Routine Monitoring?, Lia Smith

Theses: Doctorates and Masters

The challenges associated with environmental monitoring such as the impact on the environment and the financial costs are problems we face when trying to conserve freshwater systems around the world. The need for precise and accurate results that are cost effective is important so that we can achieve our conservation goals.

The overall aim of this study was to explore Next-Generation - metabarcoding for the detection of feral and native freshwater fish species based on the DNA shed by individual organisms into the water column. Cytochrome c oxidase I (COI) primers were developed for this study using DNA from six …

Exploring The Impact Of Collective Bargaining Agreements On Employee Performance Management, Nana Gyesie

Walden Dissertations and Doctoral Studies

As of 2014, union density in the United States had dropped compared to union density during the 1950s. Collective bargaining agreements are the foundational agreement for all issues related to salary, benefits, and working conditions. The purpose of this multiple case study was to explore how collective bargaining agreements hindered or enabled managers from creating and sustaining high performance work practices. The conceptual framework included Walton and McKersie's work on behavioral theories for labor negotiations, human capital, and collective bargaining, and Huselid's work on high performance work practices. Fifteen respondents across 5 labor unions in Washington DC were selected through …

Evolution In The Deep Sea: Scales And Mechanisms Of Population Divergence, Amanda E. Glazier

Graduate Doctoral Dissertations

The deep sea is the Earth’s largest ecosystem and harbors a unique and largely endemic fauna. Although most research has focused on the ecological mechanisms that allow coexistence, recent studies have begun to investigate how this remarkable fauna evolved.. My work quantifies geographic patterns of genetic variation and investigates potential mechanisms that shape evolution in the deep ocean.

Bathymetric genetic divergence is common in the deep sea with population structure typically decreasing with depth. The evolutionary mechanisms that underlie these patterns are poorly understood. Geographic patterns of genetic variation indicated that the protobranch bivalve Neilonella salicensis was composed of two …

Evolutionary Dynamics Of Tree Invasions: Complementing The Unified Framework For Biological Invasions, Rafael D. Zenni, Ian A. Dickie, Michael J. Wingfield, Heidi Hirsch, Casparus J. Crous, Laura A. Meyerson, Treena I. Burgess, Thalita G. Zimmermann, Metha M. Klock, Evan Siemann, Alexandra Erfmeier, Roxana Aragon, Lia Montti, Johannes J. Le Roux

Faculty Publications, Environmental Studies

Evolutionary processes greatly impact the outcomes of biological invasions. An extensive body of research suggests that invasive populations often undergo phenotypic and ecological divergence from their native sources. Evolution also operates at different and distinct stages during the invasion process. Thus, it is important to incorporate evolutionary change into frameworks of biological invasions because it allows us to conceptualize how these processes may facilitate or hinder invasion success. Here, we review such processes, with an emphasis on tree invasions, and place them in the context of the unified framework for biological invasions. The processes and mechanisms described are pre-introduction evolutionary …

Reef Society And The Tyranny Of Data, Robert Wintner

Animal Sentience

Modern science now approaches divergent processes in many areas, including health assessments of marine eco-systems and social aspects of marine species. Scientific data have long enjoyed a reputation for objectivity but incidents of science-for-hire, data spinning/skewing and political jading are more frequent than ever. In the field of reef creature sensitivity, technical treatises can “logically” explain away what a person of average education can clearly observe on any given reef. Western medicine discounted anecdotal evidence of any cure outside the 4% margin of error until those cures demanded attention and in some cases application. Modern science must now enter an …

Still Wondering How Flesh Can Feel, Gwen J. Broude

Animal Sentience

Reber believes he has simplified Chalmers’s “hard problem” of consciousness by arguing that subjectivity is an inherent feature of biological forms. His argument rests on the related notions of continuity of mind and gradual accretion of capacities across evolutionary time. These notions need to be defended, not just asserted. Because Reber minimizes the differences in mental faculties among species across evolutionary time, it becomes easier to assert, and perhaps believe, that sentience is already present in early biological forms. The more explicit we are about the differences among these mental faculties and the differences across species, the less persuasive is …

Population Density, Habitat Dynamic And Aerial Survival Of Relict Cave Bivalves From Genus Congeria In The Dinaric Karst, Olga Jovanović Glavaš, Branko Jalžić, Helena Bilandžija

International Journal of Speleology

Caves are some of the least-known ecosystems on Earth and long-term ecological studies and population size estimates are very rare. Genus Congeria is a Tertiary relict that comprises three species from Dinaric karst area; C. kusceri, C. jalzici and C. mulaomerovici, each with very limited distribution. They are the only known cave bivalves and in contrast to many other cave species, they form populations with high densities. We estimated that the population of C. kusceri in Jama u Predolcu is between 72,454 and 72,906 individuals. The highest density occurred between one and three meters depth, and reached maximum …

A Machine Learning Approach For Using The Postmortem Skin Microbiome To Estimate The Postmortem Interval, Hunter R. Johnson, Donovan D. Trinidad, Stephania Guzman, Zenab Khan, James V. Parziale, Jennifer M. Debruyn, Nathan H. Lents

Publications and Research

Research on the human microbiome, the microbiota that live in, on, and around the human person, has revolutionized our understanding of the complex interactions between microbial life and human health and disease. The microbiome may also provide a valuable tool in forensic death investigations by helping to reveal the postmortem interval (PMI) of a decedent that is discovered after an unknown amount of time since death. Current methods of estimating PMI for cadavers discovered in uncontrolled, unstudied environments have substantial limitations, some of which may be overcome through the use of microbial indicators. In this project, we sampled the microbiomes …

Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

One primary goal at the intersection of community ecology and global change biology is to identify functional traits that are useful for predicting plant community response to global change. We used observations of community composition from a long-term field experiment in two adjacent plant communities (grassland and coastal sage shrub) to investigate how nine key plant functional traits were related to altered water and nitrogen availability following fire. We asked whether the functional responses of species found in more than one community type were context dependent and whether community-weighted mean and functional diversity were significantly altered by water and nitrogen …

Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

One primary goal at the intersection of community ecology and global change biology is to identify functional traits that are useful for predicting plant community response to global change. We used observations of community composition from a long-term field experiment in two adjacent plant communities (grassland and coastal sage shrub) to investigate how nine key plant functional traits were related to altered water and nitrogen availability following fire. We asked whether the functional responses of species found in more than one community type were context dependent and whether community-weighted mean and functional diversity were significantly altered by water and nitrogen …

Impacts Of Long-Term Precipitation Manipulation On Hydraulic Architecture, Xylem Function, And Canopy Status In A Piñon-Juniper Woodland, Patrick J. Hudson

Biology ETDs

The Southwestern US is predicted to become hotter and drier, as global climate change forces increasing temperatures and variability in timing and size of precipitation inputs. Drought stress has become more frequent in recent decades, and resulted in massive forest mortality in piñon-juniper woodlands. During recent severe droughts (2000-2003, 2009-2012), piñon pine (Pinus edulis Englem.) suffered disproportionately high mortality compared to co-occurring one-seed juniper (Juniperus monosperma [Engelm.] Sarg.). A large-scale precipitation manipulation experiment was established in a piñon-juniper woodland in central New Mexico to test hypotheses regarding tree survival and mortality with respect to altered water regimes. Our …

Integrating Habitat Suitability Modeling And Radio Telemetry To Describe Habitat Use Of The Western Massasaugas, Sistrurus T. Tergeminus, In Texas, Mitchell R. Barazowski

Biology Theses

Habitat suitability modeling using the software package MaxEnt (Phillips, Anderson, & Schapire, 2006) is a popular method for describing the habitat of rare species. MaxEnt uses “presence only” data to develop models; however presence data are highly skewed towards areas of high detection probability and these areas may not represent the full range of habitat use. Thusly, predictions from models developed using only data from areas with high detection probability may not represent all suitable habitat. This study tested the ability of MaxEnt models developed using three different data sets to accurately describe Western Massasauga (Sistrurus t. tergeminus) habitat at …

Territoriality And Spatial Structure In The Green Anole, Anolis Carolinensis, William D. Weber Jr.

LSU New Orleans Theses and Dissertations

Anolis carolinensis has been a model organism for ecology and evolutionary biology since the seventies, yet there are still understudied aspects of their ecology. A five-year study has provided microsatellite genotypes to be used in building a pedigree and assess relatedness, enabling us to evaluate the spatial distribution of an urban population of A. carolinensis. Results indicate no correlation between a male’s size and the distance others keep from it; however, males belonging in the heavyweight morph are dictating the spatial distribution in this population. In addition, juvenile dispersal of male offspring and partial philopatry of female offspring are …

Variation In Female Mating Behavior And Success In The Damselfly, Calopteryx Maculata, Suzanne E. Allison

Masters Theses, 2010-2019

Traditionally, the study of sexual selection has focused on the evolution of elaborate male traits and how they enhance the ability to out-compete other males directly (access to females) and indirectly (access to desirable territories or resources). Female trait studies have focused most on evolved preferences for male traits. While we know much about how sexual selection acts on males, there is a deficit of equivalent study on females. In insects, including damselflies, male size and pigmentation are positively correlated with fat reserves and immune abilities, and therefore with male competitive ability. Here, we show that phenotypic variation that has …

Vertical Movement Of The Endangered James Spinymussel (Pleurobema Collina) And The Notched Rainbow Mussel (Villosa Constricta) In Response To Floods At Different Temperatures And Substrates: Implications For Conservation And Management, Dorottya Boisen

Masters Theses, 2010-2019

Freshwater mussels are keystone species in their ecosystems, improving water and substrate quality for other organisms while they are alive, and buffering stream pH and providing shelter with their shells after they die. Approximately 70% of all freshwater mussel species are endangered globally. The James Spinymussel (Pleurobema collina) is a critically endangered species that lives in disparate tributaries of the James River of Virginia. Like other freshwater mussels, they have a cryptic appearance and behavior, making them difficult to find and therefore, to study and conserve. Previous studies indicate a higher percentage of mussels are surfaced during their …

Why We Still Need To Worry About Bees, Meaghan Lee Callaghan

Capstones

American honey bees, and other native bee species, are still in decline, though the specter of colony collapse disorder may be fading behind us. Colony decline, the loss of bees overwinter experienced across the country at a quarter to third lost per hive (sometimes more), is now expected. Losses can include those from colony collapse disorder. The author discusses the different causes for colony decline and speaks to bee health scientists and local beekeepers. Read more at: http://www.meaghanleecallaghan.com/capstone/index.html

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …