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An Historical Overview And Update Of Wolf-Moose Interactions In Northeastern Minnesota, L. David Mech, John Fieberg, Shannon M. Barber-Meyer Jan 2018

An Historical Overview And Update Of Wolf-Moose Interactions In Northeastern Minnesota, L. David Mech, John Fieberg, Shannon M. Barber-Meyer

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Wolf (Canis lupus) and moose (Alces americanus) populations in northeastern Minnesota, USA, have fluctuated for decades and, based on helicopter counts, moose numbers declined to a new low from 2006 to about 2012. Other steep declines were found in 1991 and 1998 during periods when moose counts were done with fixed-wing aircraft; these declines also appeared to be real. Winter wolf numbers, monitored in part of the moose range, had been increasing since about 2002 to the highest population in decades in 2009. However, from 2009 to 2016, wolves decreased precipitously, and the moose- population decline leveled …


Diversity Of Water Bugs In Gujranwala District, Punjab, Pakistan, Muhammad Shahbaz Chattha, Abu Ul Hassan Faiz, Arshad Javid, Irfan Baboo, Inayat Ullah Malik Jan 2018

Diversity Of Water Bugs In Gujranwala District, Punjab, Pakistan, Muhammad Shahbaz Chattha, Abu Ul Hassan Faiz, Arshad Javid, Irfan Baboo, Inayat Ullah Malik

Journal of Bioresource Management

Water bugs fall under the order Hemiptera, suborder Heteroptera, which is further divided into two types, i.e., semi-aquatic (Gerromorpha) and true water bugs (Nepomorpha). They play a vital role as biological control agents and also a source of food for fishes, birds and other aquatic organisms. The present work was carried out to ascertain aquatic Hemiptera in different lentic and lotic water bodies of various sizes in Gujranwala district, Pakistan. A total of 10 species belonging to five families were identified. Species include Nepa ruber Linnaeus, Laccotrephes elongatus Montandon, Ranatra filiformis Fabricius (Nepidae), Corixa substriata Uhler, Micronecta proba …


Drivers Of Post-Fire Vascular Plant Regeneration In The Conifer-Dominated Boreal Forest Of Southern Northwest Territories, Alison White Jan 2018

Drivers Of Post-Fire Vascular Plant Regeneration In The Conifer-Dominated Boreal Forest Of Southern Northwest Territories, Alison White

Theses and Dissertations (Comprehensive)

In recent years, climate warming has led to an increase in the severity and frequency of naturally occurring fires in boreal ecosystems globally. In 2014, an unprecedented 3.4 million hectares of boreal forest burned in the Northwest Territories (NWT). While much research has focused on post-fire succession of serotinous tree species such as Picea mariana (black spruce) and Pinus banksiana (jack pine), the understory community of vascular plants play an important role in ecosystem functioning but less is known about the response of this component of the system to changing fire regimes. Regeneration strategies such as the ability to resprout …


Effects Of Management On Functional Diversity In Restored Tallgrass Prairie Plant Communities, Anna K. Farrell Jan 2018

Effects Of Management On Functional Diversity In Restored Tallgrass Prairie Plant Communities, Anna K. Farrell

Graduate Research Theses & Dissertations

While recent studies have embraced evaluating ecosystems through functional diversity, the focus on interspecific trait changes may limit their usefulness and application. Functional traits (traits that explain species’ responses to environmental conditions and their ecosystem roles) can provide a more nuanced understanding of how disturbances shape plant communities and the functions they perform. Further, the inclusion of intraspecific trait responses can explain a significant portion of these relationships. In ecosystem restorations, management strategies can act as environmental drivers and disturbances that affect community structure. This study examined how three environmental drivers (grazer presence, prescribed fire, and age) in restored grasslands …


The Value Of Animal Behaviour As A Bio-Indicator Of Restoration Quality, Floyd Holmes Jan 2018

The Value Of Animal Behaviour As A Bio-Indicator Of Restoration Quality, Floyd Holmes

Theses: Doctorates and Masters

Woodland restoration is a complex endeavour, and restoration ecology as a scientific discipline requires constant re-assessments and adjustments if it is to improve outcomes and better provide for biodiversity. The promise of effective restoration is often used to justify destructive processes that affect many of the world’s ecosystems. It is therefore imperative that those promises can be met, which comes down to restoration ecologists’ and land managers’ capacity to predict and facilitate desirable ecological changes in a timely and socio-economically responsible manner. As perspectives have changed, and knowledge has been gained over the past few decades there have been several …


Within-Fire Patchiness Associated With Prescribed Burning In The Northern Jarrah Forests Of Western Australia, Zigourney Nielsen Jan 2018

Within-Fire Patchiness Associated With Prescribed Burning In The Northern Jarrah Forests Of Western Australia, Zigourney Nielsen

Theses: Doctorates and Masters

There is growing understanding of the importance of landscape mosaics and heterogeneity for biodiversity outcomes in Western Australia. However, there is limited information on the patchiness (spatial configuration of unburnt and burnt patches which occur at a range of spatial scales) within the perimeter of a single prescribed burn. Of particular concern is the idea that prescribed burning operations, carried out under very restricted weather and environmental conditions, can lead to structural and floristic homogenization of the area within a burn perimeter. This may be evident as reduced post-fire vegetation patchiness. Western Australian Jarrah (Eucalyptus marginata) forests are managed to …


The Spatial Ecology And Microhabitat Selection Of The Pygmy Rattlesnake (Sistrurus Miliarius) In Southwestern Missouri, Dylan Wallace Maag Dec 2017

The Spatial Ecology And Microhabitat Selection Of The Pygmy Rattlesnake (Sistrurus Miliarius) In Southwestern Missouri, Dylan Wallace Maag

Graduate Theses/Dissertations

Despite a wide distribution throughout the southeastern United States, pygmy rattlesnakes (Sistrurus miliarius) have received less research attention than many other rattlesnake species. I captured a total of 33 S. miliarius at the Drury-Mincy Conservation Area (DMCA) and retained 14 large individuals (mostly gravid females) for a radio telemetry study. Snakes were primarily captured during evening road driving surveys and were encountered rarely with any other sampling technique. Sistrurus miliarius are widespread at DMCA where they were encountered in forest, savanna, and glade habitats. Snakes selected microhabitats with more vegetative cover and tree canopy closure than random sites …


Lake Sturgeon (Acipenser Fulvescens) Trophic Position And Movement Patterns In The Lower Niagara River, Ny, Eric Bruestle Dec 2017

Lake Sturgeon (Acipenser Fulvescens) Trophic Position And Movement Patterns In The Lower Niagara River, Ny, Eric Bruestle

Great Lakes Center Masters Theses

Lake sturgeon Acipenser fulvescens were once widely distributed throughout the Laurentian Great Lakes. However, widespread overharvest and habitat degradation has diminished their numbers. The lower Niagara River, NY contains one of the few remaining recovering populations of lake sturgeon in New York State. The goal of this study was to characterize the trophic position of lake sturgeon in the context of an invasive species dominated food web and to describe their movement patterns and residency within the lower Niagara River. Stomach content analysis and stable nitrogen (δ15N) and carbon (δ13C) isotope analysis of tissue was used …


Island Biogeography Of Small Mammals And Associated Ectoparasites In The Ozark Glades, Emily M. Beasley Dec 2017

Island Biogeography Of Small Mammals And Associated Ectoparasites In The Ozark Glades, Emily M. Beasley

Graduate Theses/Dissertations

Island Biogeography Theory (IBT) explains and quantifies broad-scale ecological patterns among islands and isolated habitat patches. IBT predicts that the number of species per habitat patch varies as a function of area and isolation as a result of local colonization and extinction. IBT has been extended to habitat islands and hosts as islands for their associated parasites. In the latter system, host body mass acts as a substitute for island area, whereas host population density is used as a measure of isolation. Using the fragmented Ozark glades and the small mammals therein as a model system, I 1) used a …


The Cost Of Roaming Free: Assessing The Effects Of Plant Secondary Metabolites On Diet Selection And Nutritional Condition In A Free-Ranging Generalist Herbivore, Daniel Patrick Melody Dec 2017

The Cost Of Roaming Free: Assessing The Effects Of Plant Secondary Metabolites On Diet Selection And Nutritional Condition In A Free-Ranging Generalist Herbivore, Daniel Patrick Melody

Boise State University Theses and Dissertations

Large vertebrate herbivores have a wide variety of browsing options available. However, most plants contain a suite of plant secondary metabolites (PSMs) that can have toxic effects when ingested. Herbivores must therefore make dietary choices that minimize the potentially harmful effects of PSM ingestion and maximize the use of available nutrients and protein. During winter months, in northern latitudes, climatological factors restrict browsing options and many populations of herbivores must subsist primarily on forage that is relatively poor in nutritional quality and high in PSMs. Many species of herbivores have developed a suite of behavioral and physiological adaptations to cope …


Impacts Of Anthropogenic Noise On Litter Chemistry And Decomposition Processes In A Semi-Arid Ecosystem, Peggy Martinez Dec 2017

Impacts Of Anthropogenic Noise On Litter Chemistry And Decomposition Processes In A Semi-Arid Ecosystem, Peggy Martinez

Boise State University Theses and Dissertations

Chronic anthropogenic noise in ecosystems can change avian/arthropod/plant interactions, but it is unclear how changes in herbivory pressure affects functional traits of plants. We asked how anthropogenic noise, mediated through changes in arthropod abundance, altered timing of leaf senesce, chemical composition (i.e. C/N ratios, total phenolics) and decomposition rates of leaf litter in Wyoming big sagebrush (Artemisia tridentata spp. wyo.). Additionally, we asked if changes in arthropod abundance altered secondary metabolites (i.e. monoterpenes) in foliage. We broadcasted recorded gas compressor station noise (24hrs/day) from April through October 2015 in a sagebrush steppe ecosystem of Idaho, USA. We quantified …


Ancient Amazonian Populations Left Lasting Impacts On Forest Structure, Michael W. Palace, Crystal H. H. Mcmichael, Bobby H. Braswell, Stephen C. Hagen, Mark B. Bush, Eduardo Góes Neves, Eduardo K. Tamanaha, Christina Herrick, Steve E. Frolking Dec 2017

Ancient Amazonian Populations Left Lasting Impacts On Forest Structure, Michael W. Palace, Crystal H. H. Mcmichael, Bobby H. Braswell, Stephen C. Hagen, Mark B. Bush, Eduardo Góes Neves, Eduardo K. Tamanaha, Christina Herrick, Steve E. Frolking

Ocean Engineering and Marine Sciences Faculty Publications

Amazonia contains a vast expanse of contiguous tropical forest and is influential in global carbon and hydrological cycles. Whether ancient Amazonia was highly disturbed or modestly impacted, and how ancient disturbances have shaped current forest ecosystem processes, is still under debate. Amazonian Dark Earths (ADEs), which are anthropic soil types with enriched nutrient levels, are one of the primary lines of evidence for ancient human presence and landscape modifications in settings that mostly lack stone structures and which are today covered by vegetation. We assessed the potential of using moderate spatial resolution optical satellite imagery to predict ADEs across the …


Ecological And Oceanographic Influences On Leatherback Turtle Behavior And Scyphozoan Jellyfish Distributions In The Gulf Of Mexico, Katrina Aleksa Dec 2017

Ecological And Oceanographic Influences On Leatherback Turtle Behavior And Scyphozoan Jellyfish Distributions In The Gulf Of Mexico, Katrina Aleksa

Dissertations

Leatherback turtles (Dermochelys coriacea) are a wide-ranging, oceanic species that feed exclusively on gelatinous zooplankton. Leatherback have been spotted in the Gulf of Mexico (GoM) for several decades and consistently had a high level of interactions with longline fisheries. However, no quantitative studies have been performed to address the spatiotemporal distribution of these turtles in the GoM. This research determines 1) leatherback movements and high-use areas in the GoM, 2) their association with oceanographic features, 3) the distribution and density of two abundant medusae in the northern GoM and any association with biophysical parameters, and 4) the body …


Mode And Rate Of Evolution Of Haemosporidian Mitochondrial Genomes: Timing The Radiation Of Avian Parasites, M. Andreína Pacheco, Nubia E. Matta, Gediminas Valkiūnas, Patricia G. Parker, Beatriz Mello, Craig E. Stanley Jr., Miguel Lentino, Maria Alexandra Garcia-Amado, Michael Cranfield, Sergei L. Kosakovsky Pond, Ananias A. Escalante Nov 2017

Mode And Rate Of Evolution Of Haemosporidian Mitochondrial Genomes: Timing The Radiation Of Avian Parasites, M. Andreína Pacheco, Nubia E. Matta, Gediminas Valkiūnas, Patricia G. Parker, Beatriz Mello, Craig E. Stanley Jr., Miguel Lentino, Maria Alexandra Garcia-Amado, Michael Cranfield, Sergei L. Kosakovsky Pond, Ananias A. Escalante

Harold W. Manter Laboratory of Parasitology: Library Materials

Haemosporidians are a diverse group of vector-borne parasitic protozoa that includes the agents of human malaria; however, most of the described species are found in birds and reptiles. Although our understanding of these parasites’ diversity has expanded by analyses of their mitochondrial genes, there is limited information on these genes’ evolutionary rates. Here, 114 mitochondrial genomes (mtDNA) were studied from species belonging to four genera: Leucocytozoon, Haemoproteus, Hepatocystis, and Plasmodium. Contrary to previous assertions, the mtDNA is phylogenetically informative. The inferred phylogeny showed that, like the genus Plasmodium, the Leucocytozoon and Haemoproteus genera are not monophyletic groups. Although …


Language And Socioeconomics Predict Geographic Variation In Peer Review Outcomes At An Ecology Journal, C. Sean Burns, Charles W. Fox Nov 2017

Language And Socioeconomics Predict Geographic Variation In Peer Review Outcomes At An Ecology Journal, C. Sean Burns, Charles W. Fox

Information Science Faculty Publications

Papers submitted by scientists located in western nations generally fare better in the peer review process than do papers submitted by scientists from elsewhere. This paper examines geographic variation in peer review outcomes (whether a manuscript is sent for review, review scores obtained, and final decisions by editors) for 3529 submissions over a 4.5 year period at the journal Functional Ecology. In particular, we test whether geographic variation in language and socioeconomics are adequate to explain most or are all of this variation. There was no relationship between the geographic regions of handling editors and the decisions to send …


Assessment Of Intra And Interregional Genetic Variation In The Eastern Red-Backed Salamander, Plethodon Cinereus, Via Analysis Of Novel Microsatellite Markers, Alexander C. Cameron Oct 2017

Assessment Of Intra And Interregional Genetic Variation In The Eastern Red-Backed Salamander, Plethodon Cinereus, Via Analysis Of Novel Microsatellite Markers, Alexander C. Cameron

Biology

The red-backed salamander (Plethodon cinereus) has long-served as a model system in ecology, evolution, and behavior, and studies surveying molecular variation in this species have become increasingly common over the past decade. However, difficulties are commonly encountered when extending microsatellite markers to populations that are unstudied from a genetic perspective due to high levels of genetic differentiation across this species’ range. To ameliorate this issue, we used 454 pyrosequencing to identify hundreds of microsatellite loci. We then screened 40 of our top candidate loci in populations in Virginia, Pennsylvania, and Ohio—including an isolated island population ~ 4.5 km off the …


Trophic Roles Of Tadpoles In Tropical Australian Streams, Katrin Schmidt, Melanie L. Blanchette, Richard G. Pearson, Ross A. Alford, Aaron M. Davis Oct 2017

Trophic Roles Of Tadpoles In Tropical Australian Streams, Katrin Schmidt, Melanie L. Blanchette, Richard G. Pearson, Ross A. Alford, Aaron M. Davis

Research outputs 2014 to 2021

Tadpoles can be abundant consumers in stream ecosystems, and may influence the structure and function of streams through their feeding activities and interactions with other organisms. To understand the contribution of tadpoles to stream functioning, and the potential impact of their loss, it is necessary to determine their diets and how they might influence food-web structure. Using gut-content analysis and stable-isotope analysis of N and C, we determined the main food sources and trophic positions of tadpoles of five native frog species, invertebrates, and fish in upland and lowland Australian Wet Tropics streams. Omnivory was prevalent among the tadpoles and …


Highly Divergent 16s Rrna Sequences In Ribosomal Operons Of Scytonema Hyalinum (Cyanobacteria), Jeffrey R. Johansen, Jan Mares, Nicole Pietrasiak, Marketa Bohunicka, Jan Zima Jr., Lenka Stenclova, Tomas Hauer Oct 2017

Highly Divergent 16s Rrna Sequences In Ribosomal Operons Of Scytonema Hyalinum (Cyanobacteria), Jeffrey R. Johansen, Jan Mares, Nicole Pietrasiak, Marketa Bohunicka, Jan Zima Jr., Lenka Stenclova, Tomas Hauer

2017 Faculty Bibliography

A highly divergent 16S rRNA gene was found in one of the five ribosomal operons present in a species complex currently circumscribed as Scytonema hyalinum (Nostocales, Cyanobacteria) using clone libraries. If 16S rRNA sequence macroheterogeneity among ribosomal operons due to insertions, deletions or truncation is excluded, the sequence heterogeneity observed in S. hyalinum was the highest observed in any prokaryotic species thus far (7.3± 9.0%). The secondary structure of the 16S rRNA molecules encoded by the two divergent operons was nearly identical, indicating possible functionality. The 23S rRNA gene was examined for a few strains in this complex, and it …


An Unparalleled Opportunity For An Important Ecological Study, L. David Mech, Shannon M. Barber-Meyer, Juan Carlos Blanco, Luigi Boitani, Ludwig Carbyn, Glenn Delgiudice, Steven H. Fritts, Djuro Huber, Olof Liberg, Brent Patterson, Richard R. Thiel Oct 2017

An Unparalleled Opportunity For An Important Ecological Study, L. David Mech, Shannon M. Barber-Meyer, Juan Carlos Blanco, Luigi Boitani, Ludwig Carbyn, Glenn Delgiudice, Steven H. Fritts, Djuro Huber, Olof Liberg, Brent Patterson, Richard R. Thiel

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Wolves (Canis lupus) and moose (Alces americanus) have been studied since 1958 on 540-squarekilometer Isle Royale National Park, in Lake Superior. Wolves arrived there across the ice around 1949, and the population once increased to about 50, averaging about 25 annually (Mech 1966, Jordan et al. 1967, Vucetich and Peterson 2009). However, for various reasons, wolf numbers there have now dwindled to 2 nonbreeders, and the US National Park Service has proposed reintroducing 20–30 wolves over 3 years (National Park Service 2016). This situation offers an unparalleled opportunity to promote science-based management of this unique national park. …


Physiological Ecology Of Four Endemic Alabama Species And The Exotic Asiatic Weatherfish, Misgurnus Anguillicaudatus (Cantor, 1842), Lindsay M. White, Mark E. Meade, Benjamin A. Staton Sep 2017

Physiological Ecology Of Four Endemic Alabama Species And The Exotic Asiatic Weatherfish, Misgurnus Anguillicaudatus (Cantor, 1842), Lindsay M. White, Mark E. Meade, Benjamin A. Staton

Southeastern Fishes Council Proceedings

The occurrence of Asiatic Weatherfish, Misgurnus anguillicaudatus, in Alabama, a state known for its rich biodiversity, has generated concern among conservation managers. The current study used respirometry techniques to investigate the effects of increasing temperature on four native southeastern fishes (one cyprinid, two percids, and one elassomid) and the non-native M. anguillicaudatus. A minimum of five individuals of each species were used, and three experimental temperatures were chosen to represent spring and summer averages of northeast Alabama streams (15, 20, and 25°C). Overall, mean standard metabolic rates (SMRs) for M. anguillicaudatus were low (97.01, 127.75, and 158.50 mg …


Does Detection Range Matter For Inferring Social Networks In A Benthic Shark Using Acoustic Telemetry?, Johann Mourier, Nathan Charles Bass, Tristan L. Guttridge, Joanna Day, Culum Brown Sep 2017

Does Detection Range Matter For Inferring Social Networks In A Benthic Shark Using Acoustic Telemetry?, Johann Mourier, Nathan Charles Bass, Tristan L. Guttridge, Joanna Day, Culum Brown

Social Behavior Collection

Accurately estimating contacts between animals can be critical in ecological studies such as examining social structure, predator–prey interactions or transmission of information and disease. While biotelemetry has been used successfully for such studies in terrestrial systems, it is still under development in the aquatic environment. Acoustic telemetry represents an attractive tool to investigate spatio-temporal behaviour of marine fish and has recently been suggested for monitoring underwater animal interactions. To evaluate the effectiveness of acoustic telemetry in recording interindividual contacts, we compared co-occurrence matrices deduced from three types of acoustic receivers varying in detection range in a benthic shark species. Our …


A Synergistic Approach For Evaluating Climate Model Output For Ecological Applications, Rachel D. Cavanagh, Eugene J. Murphy, Thomas J. Bracegirdle, John Turner, Cheryl A. Knowland, Stuart P. Corney, Walker O. Smith Jr., Claire M. Waluda, Nadine M. Johnston, Richard G. J. Bellerby, Eileen E. Hofmann Sep 2017

A Synergistic Approach For Evaluating Climate Model Output For Ecological Applications, Rachel D. Cavanagh, Eugene J. Murphy, Thomas J. Bracegirdle, John Turner, Cheryl A. Knowland, Stuart P. Corney, Walker O. Smith Jr., Claire M. Waluda, Nadine M. Johnston, Richard G. J. Bellerby, Eileen E. Hofmann

CCPO Publications

Increasing concern about the impacts of climate change on ecosystems is prompting ecologists and ecosystem managers to seek reliable projections of physical drivers of change. The use of global climate models in ecology is growing, although drawing ecologically meaningful conclusions can be problematic. The expertise required to access and interpret output from climate and earth system models is hampering progress in utilizing them most effectively to determine the wider implications of climate change. To address this issue, we present a joint approach between climate scientists and ecologists that explores key challenges and opportunities for progress. As an exemplar, our focus …


Bridging Post-Wildfire Communication Gaps Between Managers, Researchers, And Local Communities, Including A Biological Soil Crust Case Study, Hilary Louise Whitcomb Aug 2017

Bridging Post-Wildfire Communication Gaps Between Managers, Researchers, And Local Communities, Including A Biological Soil Crust Case Study, Hilary Louise Whitcomb

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Immediately after a wildfire land managers act quickly to protect water supplies, soil stability, habitat, and forage. We don't currently understand how managers make trade-off decisions between social, political, and ecological factors in these tight timelines or if they are able to use new science. We do know ecosystems often benefit from local engagement, and new, scientifically-grounded methods that improve restoration efforts are needed. As post-wildfire timelines don’t often allow for outside input, I asked managers what they and stakeholders think about post-wildfire projects and what managers think about new science. I asked local citizens what they think about postwildfire …


Landscape-Scale Manipulation Of The Acoustic Environment Alters The Distribution Of Breeding Birds And Arthropods, Elizeth Cinto-Mejia Aug 2017

Landscape-Scale Manipulation Of The Acoustic Environment Alters The Distribution Of Breeding Birds And Arthropods, Elizeth Cinto-Mejia

Boise State University Theses and Dissertations

Oil and gas development has rapidly increased across the world over the last several decades. Anthropogenic noise, an invisible pollutant that alters animal distribution and behavior, could be responsible for documented wildlife population declines near loud compressor stations in energy extraction fields. We experimentally played back compressor noise, creating a “phantom natural gas field” in a large-scale experiment, and tested the effects of noise on songbird distributions during the breeding season and on arthropod distributions. Further, to begin to understand the influence of noise produced by different types of extraction infrastructure, we examined the effects of sound intensity and bandwidth, …


Natural And Anthropogenic Effects On Life History Characteristics In The Side-Blotched Lizard (Uta Stansburiana), Geoffrey David Stuart Smith Aug 2017

Natural And Anthropogenic Effects On Life History Characteristics In The Side-Blotched Lizard (Uta Stansburiana), Geoffrey David Stuart Smith

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Survival is a prerequisite for successful reproduction, and is thus intertwined with fitness. Some physiological systems can improve survival, like the immune system, but compete with other processes for resources. Because animals evolved with resource limitation, it is important to understand how these resource-allocation decisions are made. To meet this end, I performed four investigations addressing how life-history characteristics shift in side-blotched lizards (Uta stansburiana) using laboratory studies and multi-year field sampling. First, I measured metabolic rates in response to different immune challenges and different energy states in male lizards. I found that, surprisingly, cutaneous biopsies were associated …


Large-Scale Differences In Microbial Biodiversity Discovery Between 16s Amplicon And Shotgun Sequencing, Michael Tessler, Johannes S. Neumann, Ebrahim Afshinnekoo, Michael Pineda, Rebecca Hersch, Luiz Felipe M. Velgo, Bianca T. Segovia, Fabio A. Lansac-Toha, Michael Lemke, Rob Desalle, Christopher E. Mason, Mercer R. Brugler Jul 2017

Large-Scale Differences In Microbial Biodiversity Discovery Between 16s Amplicon And Shotgun Sequencing, Michael Tessler, Johannes S. Neumann, Ebrahim Afshinnekoo, Michael Pineda, Rebecca Hersch, Luiz Felipe M. Velgo, Bianca T. Segovia, Fabio A. Lansac-Toha, Michael Lemke, Rob Desalle, Christopher E. Mason, Mercer R. Brugler

Publications and Research

Modern metagenomic environmental DNA studies are almost completely reliant on next-generation sequencing, making evaluations of these methods critical. We compare two next-generation sequencing techniques – amplicon and shotgun – on water samples across four of Brazil’s major river floodplain systems (Amazon, Araguaia, Paraná, and Pantanal). Less than 50% of phyla identified via amplicon sequencing were recovered from shotgun sequencing, clearly challenging the dogma that mid-depth shotgun recovers more diversity than amplicon-based approaches. Amplicon sequencing also revealed ~27% more families. Overall the amplicon data were more robust across both biodiversity and community ecology analyses at different taxonomic scales. Our work doubles …


Investigating The Role Of Long Distance Dispersal In The Response Of Stream Fishes To Urbanization, Andrea Davis Jul 2017

Investigating The Role Of Long Distance Dispersal In The Response Of Stream Fishes To Urbanization, Andrea Davis

Master of Science in Integrative Biology Theses

I conducted a 7-month mark-recapture study in two watersheds differing in urban impact in order to assess the role that long distance dispersal plays in the response of tolerant stream fishes to urbanization. Our two stream sites included a heavily impacted urban stream (watershed impervious surface cover ~30%) and a mildly impacted rural stream (watershed impervious surface cover ~6%). Species of interest were marked with 12mm HPT PIT tags and included a specialist, Campostoma oligolepis (n=189 urban site, 200 rural site) and a generalist, Lepomis auritus (n=136 urban site, 182 rural site). Three resampling instances for each site were conducted …


The Evolution Of Fear Ecology: A Fruit Fly (Drosophila Melanogaster) Perspective, Itachi Mills Jul 2017

The Evolution Of Fear Ecology: A Fruit Fly (Drosophila Melanogaster) Perspective, Itachi Mills

Theses

Several mechanisms underlie how evolutionary lineages respond to predation pressures or predation risk. Further mechanisms link evolutionary predation responses to how animals forage, or find mates. However, gaps remain in our understanding about how predation and foraging interact in an evolutionary context.

In my first chapter, I elaborate on how predation and foraging relate in to one another in ecological, evolutionary and behavioral contexts. I start out with an overview of fear ecology. Then, I outline how trade-offs influence the evolution of morphological, chemical and behavioral responses to predation. I further elaborate on how these trade-offs influence reproduction. Finally, I …


The Ecology Of Acequias In The Mora Valley: Patterns, Processes And Place-Based Knowledge, Shannon Marie Rupert Jul 2017

The Ecology Of Acequias In The Mora Valley: Patterns, Processes And Place-Based Knowledge, Shannon Marie Rupert

Biology ETDs

In northern New Mexico, early settlements were clustered for protection of the people and access to water for domestic and agricultural uses was critical to their success. Irrigation ditches, known as acequias, brought water to the people, and were central to community life. These earthen ditches of varying lengths were built between one hundred and several hundred years ago, and most are still operational today. They divert water away from natural streams and across the landscape, through a system of man-made channels, until the unused water is diverted back into natural watercourses. These lateral channels appear to function as extensions …


Profiling Bat Activity And Species Presence In Managed Longleaf Pine Landscapes, Margaret Hunt Jun 2017

Profiling Bat Activity And Species Presence In Managed Longleaf Pine Landscapes, Margaret Hunt

Master of Science in Integrative Biology Theses

Restoration of native flora or reintroduction of at-risk fauna includes management practices that while encouraging presence and proliferation of target species, may adversely affect non-focal species. An endemic ecosystem undergoing restoration within the southeastern U.S. is that of the longleaf pine (Pinus palustris). Bats inhabit key ecological niches in forest ecosystems, including the longleaf pine ecosystem, and can be indicators of ecosystem condition. This study investigated the effects of current forest management practices and landscape management history on bat species presence and activity levels within habitat undergoing longleaf pine restoration. We deployed bat detectors in two wildlife management …