Digital Commons Network^™

Winter 2009, Nsu Oceanographic Center

Currents

No abstract provided.

The Impact Of Environment On Virulence Of The Pathogenic Yeast Cryptococcus Gattii, Deborah Jean Springer

Legacy Theses & Dissertations (2009 - 2024)

Four serotypes of Cryptococcus are responsible for most human and animal infections. C. gattii , serotype B and C, are the primary the causative agent of cryptococcosis in immune competent individuals whilst, C. neoformans var. neoformans serotype D, and C. neoformans var. grubii serotype A are most prevalent in immunocompromised hosts world-wide. C. gattii is recognized as a species distinct from C. neoformans based on differences in clinical manifestations, morphology, biological characteristics, and environmental niche. We used the plant model Arabidopsis thaliana plants and plant derived substrates as a model to explore C. gattii interactions in its ecological niche. C. …

Molecular Evolution Of Genes Underlying Phenotypic Differences Between Humans And Chimpanzees, Santhoshi Bandla

Legacy Theses & Dissertations (2009 - 2024)

Chimpanzees (Pan troglodytes) and bonobos (P. paniscus) are often used as models to study the genetic and morphological changes on the lineage leading to the modern humans (Homo sapiens). Results of this dissertation suggest that, in comparison to other hominoids, chimpanzees and bonobos are more derived in their relative testes sizes and promiscuous mating systems. Phylogenetic analysis of genes that might underlie increased testes size revealed that, in addition to being a sex-determining gene, SRY displays Pan-specific amino acid replacements that make it a compelling candidate as a testes-size determining gene. Strikingly, SRY and another candidate gene, DMRT3, display patterns …

Animal Helminths In Human Archaeological Remains: A Review Of Zoonoses In The Past, Luciana Sianto, Marcia Chame, Cassius S. P. Silva, Marcelo L. C. Gonçalves, Karl Reinhard, Martín Horacio Fugassa, Adauto Araújo

Karl Reinhard Publications

The authors present a review of records of intestinal parasitic helminths from animals in human archaeological remains, reported since the emergence of paleopathological studies. The objective was to relate paleoparasitological findings to geographic, biotic, and abiotic factors from the environment in which the prehistoric populations lived, and understand some aspects related to the process of human dispersion and biological and cultural evolution. Modification of eating habits and the incorporation of new cultural practices are analyzed from the perspective of zoonoses from prehistory to the present day, especially in Brazilian indigenous populations. Three tables identifying the helminths, their natural hosts, dates, …

Wolf, Canis Lupus, Visits To White-Tailed Deer, Odocoileus Virginianus, Summer Ranges: Optimal Foraging?, Dominic J. Demma, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

We tested whether Wolf (Canis lupus) visits to individual female White-tailed Deer (Odocoileus virginianus) summer ranges during 2003 and 2004 in northeastern Minnesota were in accord with optimal-foraging theory. Using GPS collars with 10- to 30-minute location attempts on four Wolves and five female deer, plus eleven VHF-collared female deer in the Wolves’ territory, provided new insights into the frequency of Wolf visits to summer ranges of female deer. Wolves made a mean 0.055 visits/day to summer ranges of deer three years and older, significantly more than their 0.032 mean visits/day to ranges of two-year-old deer, …

Primate Phylogenomics: Developing Numerous Nuclear Non-Coding, Non-Repetitive Markers For Ecological And Phylogenetic Applications And Analysis Of Evolutionary Rate Variation, Zuogang Peng, Navin Elango, Derek E. Wildman, Soojin V. Yi

Wayne State University Associated BioMed Central Scholarship

Abstract

Background

Genetic analyses are often limited by the availability of appropriate molecular markers. Markers from neutrally evolving genomic regions may be particularly useful for inferring evolutionary histories because they escape the constraints of natural selection. For the majority of taxa however, obtaining such markers is challenging. Advances in genomics have the potential to alleviate the shortage of neutral markers. Here we present a method to develop numerous markers from putatively neutral regions of primate genomes.

Results

We began with the available whole genome sequences of human, chimpanzee and macaque. Using computational methods, we identified a total of 280 potential …

Patterns Of Spiny Lobster (Panulirus Argus) Postlarval Recruitment In The Carribbean: A Crtr Project, Mark J. Butler Iv, Angela M. Mojica, Eloy Sosa-Cordero, Marines Millet, Paul Sanchez-Navarro, Miguel A. Maldonado, Juan Posada, Bladimir Rodriguez, Carlos M. Rivas, Adrian Oviedo, Marcio Arrone, Martha Prada, Nick Bach, Nilda Jimenez, Maria Del Carmen Garcia-Rivas, Kirah Forman, Donald C. Behringer Jr., Thomas Matthews, Claire Paris, Robert Cowen

Biological Sciences Faculty Publications

As part of the Coral Reef Targeted Research (CRTR) Program, a partnership between the Global Environment Facility and the World Bank, our research team examined the recruitment patterns of Caribbean spiny lobster (Panulirus argus) postlarvae among regions in the Caribbean, with a particular focus on Mesoamerica. Our goal was to collect comparable information on postlarval supply among regions and to provide data to test predictions of connectivity generated from a coupled biophysical oceanographic model of lobster larval dispersal. Here we present the results of the postlarval recruitment monitoring program. We monitored the catch of postlarvae on Witham-style collectors …

Vegetation Response To Restoration Treatments In A Former Pine Plantation In North Florida, Ryan C. Meyer

UNF Graduate Theses and Dissertations

As the human population in Florida continues to expand, development follows, and tree farms give way to homes and businesses. As parks are established, restoration of these semi-natural plantations may provide critical habitat for species conservation. This study evaluates vegetation response to restoration treatments at two study sites, formerly tree farms, now preserves in NE Florida. Treatments included thinning, clearing, or control (no treatment) within 10m^2 plots. Thinning reduced tree canopy to 20% (2-3 pines/plot) and removed all other vegetation; clearing treatments removed all biomass to bare soil; no herbicides were used. Within these plots richness and abundance was assessed …

Letter From The Dean, Lalit Verma

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Integrated Responses Of Crustaceans Inhabiting Estuaries To The Challenges Of Feeding And Digestion In Low Salinity, Daniel Luke Curtis

UNLV Theses, Dissertations, Professional Papers, and Capstones

Estuaries are highly productive and serve as vital habitats for numerous decapod crustacean species. However, the environmental conditions within estuaries are often highly dynamic and subject to large changes in salinity and temperature that occur on seasonal and tidal scales. Not all of the species occupying these habitats are adept in coping with changes in these environmental conditions. This dissertation describes the influence of low salinity conditions on the 1) habitat preference, 2) feeding behaviour and 3) digestive physiology of crustaceans inhabiting estuaries. I have primarily focussed on a weak osmoregulator, the Dungeness crab, Cancer magister , but have also …

Molecular Systematics And Phylogeography Of The Genus Richardsonius, Derek Dee Houston

UNLV Theses, Dissertations, Professional Papers, and Capstones

The complex geological and climatic events that significantly altered the landscape throughout the Cenozoic Era impacted the diversification of many North American taxa, including freshwater fishes. Here, I employ an array of phylogenetic analyses using a multiple gene tree approach to address several questions regarding the phylogenetic relationships of the North American cyprinid genus Richardsonius and two other closely related genera, Clinostomus and Iotichthys. I also use divergence time estimates generated using fossil calibrations to qualitatively assess the phylogeographic implications of evolution within and among these three genera. Mitochondrial and nuclear DNA sequences show a sister relationship between Iotichthys and …

Unionoida (Mollusca: Margaritiferidae, Unionidae) In Arkansas, Third Status Review, John L. Harris, William R. Posey Ii, C. L. Davidson, Jerry L. Farris, S. R. Oetker, J. N. Stoeckel, B. G. Crump, M. S. Barnett, H. C. Martin, J. H. Seagraves, M. W. Matthews, R. Winterringer, C. Osborne, Alan D. Christian, N. J. Wentz

Journal of the Arkansas Academy of Science

We analyzed stream inventories, phylogeographic studies, community and population estimates, life history and reproductive biology research, and suitable habitat investigations conducted from 1997-2008, as well as the Arkansas Natural Heritage Commission mussel database, to update the conservation status for all native freshwater unionoid bivalves thought to occur in Arkansas. Prior to this study, Harris et al. (1997) reviewed the distribution and status of 75 freshwater mussels considered native to Arkansas and ranked 22 species as endangered, threatened or special concern. We now recognize 85 mussel taxa in Arkansas; however, some of those have yet to be described or their nomenclature …

Mussel Inventory And Population Status Of The Federally Endangered Potamilus Capax (Green 1832) In The Tyronza River, Arkansas, N. J. Wentz, John L. Harris, Jerry L. Farris, Alan D. Christian

Journal of the Arkansas Academy of Science

Currently, few data exist for the mussel assemblages of the Tyronza River, Arkansas. The goal of this project was to inventory the freshwater mussel assemblages of the Tyronza River and determine the status of the federally endangered Potamilus capax. We qualitatively and quantitatively sampled mussel assemblages and documented the occurrence of S1 (extremely rare), S2 (very rare), and S3 (rare to uncommon) species. A total of 70.4 river kilometers were sampled in 2006 and 2007 resulting in 363 sampling sites, 4030 live individuals, and 25 species. We observed a total of 1 S1, 2 S2, and 9 S3 species. Mean …

Effects Of Habitat Quality On Reproduction In Two Georgia Populations Of Gopherus Polyphemus, Jaqueline W. Entz

College of Graduate Studies: Theses & Dissertations

Author's Abstract: The purpose of this study was to examine differences in maternal investment by examining variation in the habitat structure and reproductive parameters for two populations of Gopherus polyphemus in Southeast GA. Both habitat structure and reproductive parameters for these populations are known from a previous study, thus this study expands upon the previous one and addresses four main questions. (1) Has habitat quality changed in the past ten years within and between population sites? (2) Could a change of habitat have affected female morphology or female reproductive parameters within or between populations? (3) Is female body size shaping …

Altered Ecological Flows Blur Boundaries In Urbanizing Watersheds, Todd R. Lookingbill, Sujay S. Kaushal, Andrew J. Elmore, Robert Gardner, Keith N. Eshleman, Robert H. Hilderbrand, Raymond P. Morgan, Walter R. Boynton, Margaret A. Palmer, William C. Dennison

Geography and the Environment Faculty Publications

The relevance of the boundary concept to ecological processes has been recently questioned. Humans in the post-industrial era have created novel lateral transport fluxes that have not been sufficiently considered in watershed studies. We describe patterns of land-use change within the Potomac River basin and demonstrate how these changes have blurred traditional ecosystem boundaries by increasing the movement of people, materials, and energy into and within the basin. We argue that this expansion of ecological commerce requires new science, monitoring, and management strategies focused on large rivers and suggest that traditional geopolitical and economic boundaries for environmental decision making be …

Demographics And Habitat Selection For The Western Meadowlark (Sturnella Neglecta) In The Nebraska Sandhills, Matthew D. Giovanni

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The prairie ecosystems of the Great Plains region in North America have largely been replaced and fragmented with industrial agriculture and invasive herbaceous and woody plant species. The concurrent and large-scale suppression of wildfire and elimination of grazing by native ungulates may have further decreased the availability and quality of habitat for wildlife. Indeed, 2004 estimates indicate only 30% of historic grasslands in the Great Plains still exist, while the trends of decreased land area enrolled in the Conservation Reserve Program and increased land area in commercial agriculture indicate continued loss of habitat. This decrease in habitat availability continues to …

Planted Grasslands And Native Sod Prairie: Equivalent Habitat For Grassland Birds, Kristel K. Bakker, Kenneth F. Higgins

Natural Resource Management Faculty Publications

Little is known about how avian relationships to tracts of native sod prairie compare with avian relationships to single and multiple species of cool- and warm-season grassland plantings. We compared grassland bird species richness and density in 5 grassland cover types (n = 97) in the tallgrass prairie region of eastern South Dakota and western Minnesota, 2001–2004. Grassland bird species richness was significantly higher in native sod prairies than it was in all planted cover types except warm-season mixes. Grasslands dominated by exotic species did not support as many grassland bird species or have species densities as high as grasslands …

Dietery Response Of Sympatric Deer To Fire Using Stable Isotope Analysis Of Liver Tissue, W. D. Walter, T. J. Zimmerman, D. M. Leslie Jr., J. A. Jenks

Natural Resource Management Faculty Publications

Carbon (δ13C) and nitrogen (δ15N) isotopes in biological samples from large herbivores identify photosynthetic pathways (C3 vs. C4 ) of plants they consumed and can elucidate potential nutritional characteristics of dietary selection. Because large herbivores consume a diversity of forage types, δ13C and δ15N in their tissue can index ingested and assimilated diets through time. We assessed δ13C and δ15N in metabolically active liver tissue of sympatric mule deer (Odocoileus hemionus) and white-tailed deer (O. virginianus) to identify dietary disparity resulting from use of burned and unburned areas in a largely forested landscape. Interspecific variation in dietary disparity of deer …

Direct And Indirect Effects Of Climate Change On A Prairie Plant Community, Peter B. Adler, James Leiker, Jonathan M. Levine

Wildland Resources Faculty Publications

Background

Climate change directly affects species by altering their physical environment and indirectly affects species by altering interspecific interactions such as predation and competition. Recent studies have shown that the indirect effects of climate change may amplify or counteract the direct effects. However, little is known about the the relative strength of direct and indirect effects or their potential to impact population persistence.

Methodology/Principal Findings

We studied the effects of altered precipitation and interspecific interactions on the low-density tiller growth rates and biomass production of three perennial grass species in a Kansas, USA mixed prairie. We transplanted plugs of each …

The Fourth Level Of Social Structure In A Multi-Level Society: Ecological & Social Functions Of Clans In Hamadryas Baboons, Amy Schreier, Larissa Swedell

Publications and Research

Hamadryas baboons are known for their complex, multi-level social structure consisting of troops, bands, and one-male units (OMUs) [Kummer, 1968]. Abegglen [1984] observed a 4^th level of social structure comprising several OMUs that rested near one another on sleeping cliffs, traveled most closely together during daily foraging, and sometimes traveled as subgroups independently from the rest of the band. Abegglen called these associations “clans” and suggested that they consisted of related males. Here we confirm the existence of clans in a second wild hamadryas population, a band of about 200 baboons at the Filoha site in lowland Ethiopia. During …

Detection Of Free-Ranging West Indian Manatees Trichechus Manatus Using Side-Scan Sonar, Daniel Gonzalez-Socoloske, Leon David Olivera-Gomez, Robert E. Ford

Faculty Publications

Turbid and tannin-stained waterways are difficult habitats to study and present problems with respect to the management of aquatic fauna, and especially of endangered and cryptic animals such as manatees Trichechus spp. Linnaeus. Throughout much of the range of the extant trichechid species (T. inunguis, T. manatus, and T. senegalensis), the scientific approaches that are used successfully to document the status of the Florida subspecies (T. m. latirostris) are not feasible, due either to constraints associated with habitat or to the high costs involved. We examined the use of side-scan sonar as a novel way to acoustically detect free-ranging West …

The Effectiveness Of Individual Identification Of Bobcats Using Automatically Triggered Cameras In Michigan, Karen Ickes, Paul Keenlance

Student Summer Scholars Manuscripts

Through the research of bobcat (Lynx rufus) populations a better understanding of their range in lower Michigan can be found. The use of automatically triggered cameras is an effective way to obtain bobcat range and status information. Automatically triggered cameras allow for population studies to be executed without having to trap any animals.

Predatory Senescence In Ageing Wolves, Daniel R. Macnulty, Douglas W. Smith, John A. Vucetich, L. David Mech, Craig Packer

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

It is well established that ageing handicaps the ability of prey to escape predators, yet surprisingly little is known about how ageing affects the ability of predators to catch prey. Research into long-lived predators has assumed that adults have uniform impacts on prey regardless of age. Here we use longitudinal data from repeated observations of individually-known wolves (Canis lupus) hunting elk (Cervus elaphus) in Yellowstone National Park to demonstrate that adult predatory performance declines with age and that an increasing ratio of senescent individuals in the wolf population depresses the rate of prey offtake. Because this ratio fluctuates independently of …

Problems With The Claim Of Ecotype And Taxon Status Of The Wolf In The Great Lakes Region, Matthew A. Cronin, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Koblmuller et al. (2009) analyzed molecular genetic data of the wolf in the Great Lakes (GL) region of the USA and concluded that the animal was a unique ecotype of grey wolf and that genetic data supported the population as a discrete wolf taxon. However, some of the literature that the researchers used to support their position actually did not, and additional confusion arises from indefinite use of terminology. Herein, we discuss the problems with designation of a wolf population as a taxon or ecotype without proper definition and assessment of criteria.

Koblmuller et al. (2009) wrote ‘The GL …

A Serological Survey Of Infectious Disease In Yellowstone National Park’S Canid Community, Emily S. Almberg, L. David Mech, Douglas W. Smith, Jennifer W. Sheldon, Robert L. Crabtree

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Background: Gray wolves (Canis lupus) were reintroduced into Yellowstone National Park (YNP) after a .70 year absence, and as part of recovery efforts, the population has been closely monitored. In 1999 and 2005, pup survival was significantly reduced, suggestive of disease outbreaks.

Methodology/Principal Findings: We analyzed sympatric wolf, coyote (Canis latrans), and red fox (Vulpes vulpes) serologic data from YNP, spanning 1991–2007, to identify long-term patterns of pathogen exposure, identify associated risk factors, and examine evidence for disease-induced mortality among wolves for which there were survival data. We found high, constant exposure to canine …

A Redescription Of Three Species Of Monoecocestus (Cestoda: Anoplocephalidae) Including Monoecocestus Threlkeldi Based On New Material, Terry R. Haverkost, Scott Lyell Gardner

Scott L. Gardner Publications

Because we have new and detailed data on species in the genus, herein we redescribe both Monoecocestus macrobursatus and M. minor based on existing museum specimens. We also redescribe M. threlkeldi (Parra, 1952) using material collected in Bolivia. Based on the specimens representing M. thelkeldi, we affirm that Perutaenia Parra, 1953 should remain a junior synonym of Monoecocestus.

Costs And Benefits Of Freezing Behavior In The Harvestman Eumesosoma Roeweri (Arachnida, Opiliones), Marie-Claire Chelini, Rodrigo H. Willemart, Eileen Hebets

Eileen Hebets Publications

Animals present an enormous variety of behavioral defensive mechanisms, which increase their survival, but often at a cost. Several animal taxa reduce their chances of being detected and/or recognized as prey items by freezing (remaining completely motionless) in the presence of a predator. We studied costs and benefits of freezing in immature Eumesosoma roeweri (Opiliones, Sclerosomatidae). Preliminary observations showed that these individuals often freeze in the presence of the syntopic predatory spider Schizocosa ocreata (Araneae, Lycosidae). We verified that harvestmen paired with predators spent more time freezing than when alone or when paired with a conspecific. Then, we determined that …

Condition-Dependent Alternative Mating Tactics In A Sexually Cannibalistic Wolf Spider, Dustin J. Wilgers, Amy C. Nicholas, David H. Reed, Gail E. Stratton, Eileen Hebets

Eileen Hebets Publications

Condition-dependent male mating tactics often involve high-quality males capitalizing on the outcome of intersexual selection, whereas low-quality males use behaviors that circumvent female choice to achieve copulation. In the wolf spider Rabidosa punctulata, males display 2 distinct mating tactics: 1) “courtship”—consisting of visual and seismic components or 2) “direct mount”—consisting of males grappling/holding females until they assume a copulatory posture. We tested for condition-dependent tactic expression using both field-collected individuals (representing natural variation in body mass and condition) and individuals whose diet we manipulated in the laboratory (representing extreme divergences in body size and condition). Across both natural and …

Ecological Genomics Of Nematode Community Interactions: Model And Non-Model Approaches, Michael A. Herman, Joseph D. Coolon, Kenneth L. Jones, Timothy Todd

School of Biological Sciences: Faculty Publications

The effects of human-induced environmental change are evident at multiple levels of biological organization. To date, most environmental change studies have focused on effects at the ecosystem, community, and organismal levels. However, the ultimate controls of biological responses are located in the genome. Thus, genetic and genomic studies of organismal responses to environmental changes are necessary. Recent advances in genome analysis now make such analyses possible. In this chapter we describe a research approach and program that can begin to span this gap by using genome-enabled approaches to characterize organismal changes and then employing a genetically tractable model organism to …

Green Heating And The Mckillop Library Building, Alexandra Riewer, Anthony Rothwell, Kalei Sullivan, Other Student

BIO140 Carbon Footprint Project

As global warming becomes an ever increasing problem, it is Salve Regina University and the Newport communities job to do their part. In an effort to reduce their carbon footprint, we performed a series of tests on the heating and building of McKillop library at Salve Regina to measure its carbon emissions and environmental impact. As a team, we tested for areas of heat loss and temperature change and internal temperature and humidity fluctuation. We also focused on the types of insulation that the building uses and the efficiency of its HVAC – heating, ventilation, and air conditioning – system. …