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Comparing Population Density Estimation Techniques For Columbia Black-Tailed Deer (Odocoileus Hemionus Columbianus): Fecal Standing Crop And Distance Sampling Methods, Jubilee D. Brenneman

Honors Projects

I estimated deer density and population size on Blakely Island, WA, using the fecal standing crop (FSC) method described by Martin et al. (2011). I compared the FSC method with a well established and broadly applicable estimation method, distance sampling. Additionally, architecture of a commonly browsed shrub, Ocean Spray (Holodiscus discolor), was measured as an indicator of browsing pressure. Fecal standing crop was estimated by counting pellet groups along 26, 100 x 2m line transects. Deer density was estimated using these data and the equation derived by Martin et al. (2011). Distance sampling consisted of recording perpendicular distance …

Early Back-To-Africa Migration Into The Horn Of Africa, Jason A. Hodgson, Connie J. Mulligan, Ali Al-Meeri, Ryan L. Raaum

Publications and Research

Genetic studies have identified substantial non-African admixture in the Horn of Africa (HOA). In the most recent genomic studies, this non-African ancestry has been attributed to admixture with Middle Eastern populations during the last few thousand years. However, mitochondrial and Y chromosome data are suggestive of earlier episodes of admixture. To investigate this further, we generated new genome-wide SNP data for a Yemeni population sample and merged these new data with published genome-wide genetic data from the HOA and a broad selection of surrounding populations. We used multidimensional scaling and ADMIXTURE methods in an exploratory data analysis to develop hypotheses …

Assessing Landscape Constraints On Species Abundance: Does The Neighborhood Limit Species Response To Local Habitat Conservation Programs?, Christopher F. Jorgensen, Larkin A. Powell, Jeffrey J. Lusk, Andrew A. Bishop, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Landscapes in agricultural systems continue to undergo significant change, and the loss of biodiversity is an ever-increasing threat. Although habitat restoration is beneficial, management actions do not always result in the desired outcome. Managers must understand why management actions fail; yet, past studies have focused on assessing habitat attributes at a single spatial scale, and often fail to consider the importance of ecological mechanisms that act across spatial scales. We located survey sites across southern Nebraska, USA and conducted point counts to estimate Ring-necked Pheasant abundance, an economically important species to the region, while simultaneously quantifying landscape effects using a …

Using Otolith Elemental Composition To Track The Habitat Use, Movements, And Life History Patterns Of Common Snook (Centropomus Undecimalis) And Red Drum (Sciaenops Ocellatus) In The Tampa Bay Estuary, Holly Jacqueline Rolls

USF Tampa Graduate Theses and Dissertations

Knowledge of fish habitat use and connectivity is critical for understanding the structure and dynamics of fish populations and, therefore, necessary for the implementation of successful fisheries management strategies. Tagging is an effective means of providing such information, and the elemental composition contained within fish otoliths is increasingly being used as a natural tag. The chemical composition of otoliths reflects the incorporation of elements from different water bodies and can thus be used to understand the habitat use, movements, and life history patterns of fishes. To assess the applicability of otolith elemental composition as a tagging technique within the Tampa …

Factors In Long-Term Algal Composition Of Cayman Reefs: Determining Effects Of Natural Disturbance And Grazer Pressures, Patrick J. Doughty

Lawrence University Honors Projects

Abstract. Current research shows a worldwide shift in the population dynamics of reefs attributed to increasing human disturbance. With increasing nutrient additions, competitive populations of turf and macroalgae bloom and dominate coral reefs leading to decreased health of the reef as a whole. Unfortunately, few studies have been done showing the long-term changes in algae composition on reefs. In order to find the significant factors in the long-term composition of algae on reefs, algae and fish abundance data were collected through the Lawrence University Marine Program and analyzed for this study. Algae were split into three functional groups: encrusting, turf …

Human Diversity In Jordan: Polymorphic Alu Insertions In General Jordanian And Bedouin Groups, Daniela Zanetti, May Sadiq, Robert Carreras-Torres, Omar Khabour, Almuthanna Alkaraki, Esther Esteban, Marc Via, Pedro Moral

Human Biology Open Access Pre-Prints

Jordan, located in the Levant region, is a crucial area to investigate human migration between Africa and Eurasia. Even thought, the genetic history of Jordanians is far to be clarified including the origin of the Bedouins today resident in Jordan. Here, we provide new genetic data on autosomal independent markers in two Jordanian population samples (Bedouins and general population) in order to approach the genetic diversity inside this country and to give new information about the genetic position of these populations in the frame of the Mediterranean and Middle East area. The analyzed markers are 18 Alu polymorphic insertions characterized …

Coral-Fish Dynamics And Interactions: A Case Study Of Grand Cayman, Eileen Shea Davis

Lawrence University Honors Projects

To better understand the ecological interactions of coral reefs, it is important to understand the mechanisms that control the distribution and abundance of reef-building corals as well as the mechanisms that control the diversity and abundance of the fish community that inhabits these reef habitats. The purpose of this study was to identify specific coral-fish interactions among the reefs of Grand Cayman in order to gain insight into the biological effects of fish on the assemblage of hard corals. Using data collected by the Lawrence University Marine Program (LUMP), a number of exploratory statistical analyses were run in order to …

Evidence Of Climate-Induced Range Contractions In Bull Trout Salvelinus Confluentus In A Rocky Mountain Watersehd, U.S.A., Lisa A. Eby, Olga E. Helmy, Lisa M. Holsinger, Michael K. Young

Wildlife Biology Faculty Publications

Many freshwater fish species are considered vulnerable to stream temperature warming associated with climate change because they are ectothermic, yet there are surprisingly few studies documenting changes in distributions. Streams and rivers in the U.S. Rocky Mountains have been warming for several decades. At the same time these systems have been experiencing an increase in the severity and frequency of wildfires, which often results in habitat changes including increased water temperatures. We resampled 74 sites across a Rocky Mountain watershed 17 to 20 years after initial samples to determine whether there were trends in bull trout occurrence associated with temperature, …

Variation In Habitat Thresholds: An Analysis Of Minimum Habitat Requirements Of North American Breeding Birds, Yntze Van Der Hoek

Dissertations, Theses, and Capstone Projects

Many species show dramatic changes in population extinction or persistence probability at particular habitat amounts. These `extinction thresholds' could be translated to conservation targets, under the condition that we can derive generalities. I investigated the level of variation in landscape-level habitat thresholds for a suite of North American, forest-associated, breeding birds. Records from Breeding Bird Atlases and the availability of remotely-sensed land cover data allowed me to compare habitat thresholds for 25 species across the states of Massachusetts, Michigan, New York, Ohio, Pennsylvania, and Vermont. I show that variation in thresholds is considerable (Chapter II, III), as thresholds range from …

The Effect Of Population History On Hominoid Intraspecific Cranial Shape Diversity: Combining Population Genetic And 3d Geometric Morphometric Data, Julia Marie Zichello

Dissertations, Theses, and Capstone Projects

Cranial shape diversity within hominoids has been previously studied with the aim of understanding how levels of diversity in extant species compare with extinct hominin specimens. This dissertation addresses the question of why cranial shape diversity differs among extant hominoids. Levels of intraspecific cranial shape diversity are highly varied among hominoids. For example, Sumatran orangutan cranial shape diversity is more than twice that of all living humans. Here, the population history of each species, or sub-species, is considered as a force potentially structuring phenotypic variation. It is already well established that population history has shaped patterns of modern human cranial …

Pparγ Negatively Regulates T Cell Activation To Prevent Follicular Helper T Cells And Germinal Center Formation, Hong-Jai Park, Do-Hyun Kim, Jin-Young Choi, Won-Ju Kim, Ji Yun Kim, Ali Senejani, Soo Seok Hwang, Lark Kyun Kim, Zuzana Tobiasova, Gap Ryol Lee, Joseph Craft, Alfred L.M. Bothwell, Je-Min Choi

Biology and Environmental Science Faculty Publications

Peroxisome proliferator-activated receptor gamma (PPARγ) is a transcription factor that regulates lipid and glucose metabolism. Although studies of PPARγ ligands have demonstrated its regulatory functions in inflammation and adaptive immunity, its intrinsic role in T cells and autoimmunity has yet to be fully elucidated. Here we used CD4- PPARγ KO mice to investigate PPARγ -deficient T cells, which were hyper-reactive to produce higher levels of cytokines and exhibited greater proliferation than wild type T cells with increased ERK and AKT phosphorylation. Diminished expression of IκΒα, Sirt1, and Foxo1, which are inhibitors of NF-κΒ, was observed in PPARγ-deficient T cells that …

Divergent Transcriptional Responses To Low Temperature Among Populations Of Alpine And Lowland Species Of New Zealand Stick Insects (Micrarchus)., Luke T Dunning, Alice B Dennis, Brent J Sinclair, Richard D Newcomb, Thomas R Buckley

Biology Publications

In widespread and genetically structured populations, temperature variation may lead to among-population differentiation of thermal biology. The New Zealand stick insect genus Micrarchus contains four species that inhabit different thermal environments, two of which are geographically widespread. RNA-Seq and quantitative PCR were used to investigate the transcriptional responses to cold shock among lowland and alpine species to identify cold-responsive transcripts that differ between the species and to determine whether there is intraspecific geographical variation in gene expression. We also used mitochondrial DNA, nuclear 28S ribosomal DNA and transcriptome-wide SNPs to determine phylogeographic structure and the potential for differences in genetic …

The Neotropical Genus Austrolebias: An Emerging Model Of Annual Killifishes, Nibia Berois, María J. Arezo, Rafael O. De Sá

Biology Faculty Publications

Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life.

Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the …

Sauger Life History In The Lower Portion Of The Upper Mississippi River, Kasey L. Yallaly, Justin R. Seibert, Sara J. Tripp, David P. Herzog, Quinton E. Phelps

The Prairie Naturalist

Widespread declines have been observed in numerous riverine fish species due to a host of anthropogenic related perturbations such as channelization, dam creation, and exploitation (Graham 1997, Gerken and Paukert 2009). Understanding life history and population demographics of riverine fishes is critical to their conservation. Specific to our study, the Mississippi River has undergone extensive habitat modifications that have changed the Upper Mississippi River (UMR) from a typical lotic large, free flowing river to multiple reservoir-like pools with reduced flow (LePage 1980, Hurley et al. 1987). These habitat transformations may impact sauger (Sander canadensis) populations within the Mississippi River. Several …

Den Characteristics Of Upland And Low- Land Striped Skunks Along The Missouri River Floodplain, Dave Sempek, James A. Wilson

The Prairie Naturalist

Striped skunks (Mephitis mephitis) are opportunistic with respect to habitat use (Bixler and Gittleman 2000), inhabiting an array of landscapes in the proximity of a permanent water supply, such as forest borders, old-fields, fencerows, and open grassy fields broken by wooded ravines (Schwartz and Schwartz 1981, Larivière and Messier 2000). Food quantity and accessibility are major factors determining the quality of striped skunk habitat (Larivière et al. 1999) and are important in the den site selection.

Dens play an important role in skunk survival and reproduction due to the warmth, predator protection, and safe location for parturition they provide (Hwang …

Notes: Bed-Site Selection By Neonatal White-Tailed Deer In Central North Dakota, Brian A. Schaffer, Jonathan A. Jenks, Troy W. Grovenburg, William F. Jensen

The Prairie Naturalist

Understanding bed-site selection and vegetation characteristics provides valuable information for population management (Verme 1977, Huegel et al. 1985a, Nelson and Woolf 1987). Predation and other natural-caused mortalities of white-tailed deer (Odocoileus virginianus) neonates are most likely to occur within the first 60 days of life; a time period when selected habitat characteristics are vital to survival (Verme 1977, Hue- gel et al. 1985a, Nelson and Woolf 1987, Grovenburg et al. 2010). Prior to the study of Grovenburg et al. (2010), limited research had been completed on the bed-site selection of neonatal white-tailed deer in the grasslands of the Northern Great …

Precipitation And Fire Impacts On Small Mammals In Shortgrass Prairie, Whitney J. Priesmeyer, Raymond S. Matlack, Richard T. Kazmair

The Prairie Naturalist

The southern Great Plains and the northern part of the Texas Panhandle have received less attention from a biological perspective than other parts of the state. Although there is substantial information on the effects of fire on small mammals in the tallgrass and mixed-grass prairies, there is a lack of understanding of fire influences in the shortgrass prairie, specifically on small mammals. We conducted our study on the Cross Bar Cooperative Management Area (CMA), a 4,856 ha shortgrass prairie within the Texas panhandle. Our objective was to determine the effect of three different fire return frequencies and precipitation on diversity …

Bobcat Predation On Bighorn Lamb In The Western Black Hills Of South Dakota, Brynn L. Parr, John Kanta, Joe Sandrini, Daniel J. Thompson, Jonathan A. Jenks

The Prairie Naturalist

Bighorn sheep (Ovis canadensis) are found throughout western North America (Krausman et al. 1993, Goodson 1994, Krausman et al. 1996, Besser et al. 2012). In their current range, commonly documented large predators of bighorn sheep include cougars (Puma concolor), gray foxes (Urocyon cinereoargenteus), wolves (Canis lupus), and coyotes (C. latrans; Ross et al. 1997, Neale et al. 1998, Corti and Shackleton 2002, Dekker 2009, Karsch et al. 2013). Bald eagles (Haliaeetus leucocephalus) and golden eagles (Aquila chrysaetos) also have been documented as predators to both wild and domestic sheep (Kennedy 1948, Cunningham 1970, Nette et al. 1984, Watte and Phillips …

Obligate Male Death And Sexual Cannibalism In Dark Fishing Spiders, Steven Schwartz, William E. Wagner, Eileen A. Hebets

Eileen Hebets Publications

Male dark fishing spiders (Dolomedes tenebrosus Araneae, Pisauridae) always die during their first and only copulation, making all males monogynous. Such obligate male death can be adaptive if it facilitates sexual cannibalism, and if sexual cannibalism results in male reproductive benefits, such as an advantage in sperm competition through reduced female remating. We first conducted an experiment to determine the extent to which D. tenebrosus (1) males are cannibalized by females and (2) females engage in remating, both of which are prerequisites for several adaptive hypotheses of male self-sacrifice. We then conducted an experiment to test the hypothesis that …

Western Massasauga (Sistrurus Tergeminus): Species Conservation Assessment, Melissa J. Panella, Brent D. Johnson

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Western Massasauga (Sistrurus tergeminus) as a Tier I at-risk species. Provided are some general management recommendations regarding Western Massasaugas. Conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of this at-risk species that will aid in the decision-making process or …

Mammals Of North Dakota. First Edition. Robert Seabloom., Erin H. Gillam

The Prairie Naturalist

As a mammalogist living in the Great Plains, I was excited to hear about the publication of The Mammals of North Dakota by Robert Seabloom. No such field guide has been compiled since the late 1920s, leaving nature lovers and researchers alike without a modern source of information about the mammals of the state. Despite my enthusiasm, I will admit that I was originally expecting a standard (i.e., boring) field guide with dry facts about the taxonomic groups of interest. Much to my surprise, this book was not a mere list of relevant information, but an engaging work providing extensive …

Mate Replacement And Alloparental Care In Ferruginous Hawk (Buteo Regalis), Shubham Datta, Will M. Inselman, Jonathan A. Jenks, Kent C. Jensen, Christopher C. Swanson, Robert W. Klaver, Indrani Sasmal, Troy W. Grovenburg

The Prairie Naturalist

Alloparental care (i.e., care for unrelated offspring) has been documented in various avian species (Maxson 1978, Smith et al. 1996, Tella et al. 1997, Lislevand et al. 2001, Literak and Mraz 2011). A male replacement mate that encounters existing broods has options, which include alloparental care or infanticide. Infanticide may be beneficial in some species (Rohwer 1986, Kermott et al. 1990), but in long-lived avian species, like the ferruginous hawk (Buteo regalis) that do not renest within a season, infanticide might be detrimental. Adoption and rearing success likely provide direct evidence of competence of replacement mates as potential parents for …

Early Song Discrimination By Nestling Sparrows In The Wild, Daizaburo Shizuka

School of Biological Sciences: Faculty Publications

Songs play an important role in premating isolation in birds. However, when songs are learned, expe- rience with both conspecific and heterospecific songs in early life could lead to the development of both mixed songs and mixed preferences. One way that such learning errors can be prevented is if birds can discriminate between songs of different species prior to learning and preferentially memorize conspe- cific songs. Prior captive studies have shown that white-crowned sparrows, Zonotrichia leucophrys, are able to discriminate songs early in the process of song memorization, after about 10 days since hatching. I studied early song discrimination in …

Photosynthetic Thermal Tolerance And Recovery To Short Duration Temperature Stress In Desert And Montane Plants: A Comparative Study, David William Gallagher

Master's Theses

• Climate change models predict an increase in frequency and amplitude of extreme weather events, including heat waves. To better predict how the composition and distribution of plant assemblages might respond to these changes in temperature, it is important to understand how species currently respond to these extremes. Photosynthetic thermal tolerance (T₂₅)and photosynthetic recovery (RT₂₅) were quantified in 27 species. We also studied the relationships between T₂₅, RT₂₅ and leaf mass per area (LMA). Leaf temperature was also monitored in the field.
• Leaves used in this study were collected from two distinct …

Privatization And Property In Biology, Joan E. Strassmann, David C. Queller

Biology Faculty Research

Organisms evolve to control, preserve, protect and invest in their own bodies. When they do likewise with external resources they privatize those resources and convert them into their own property. Property is a neglected topic in biology, although examples include territories, domiciles and nest structures, food caching, mate guarding, and the resources and partners in mutualisms. Property is important because it represents a solution to the tragedy of the commons; to the extent that an individual exerts long-term control of its property, it can use it prudently, and even invest in it. Resources most worth privatizing are often high in …

Distribution And Dynamic Habitat Use Of Young Bull Sharks Carcharhinus Leucas In A Highly Stratified Northern Gulf Of Mexico Estuary, J. Marcus Drymon, Matthew J. Ajemian, Sean P. Powers

University Faculty and Staff Publications

Understanding how animals alter habitat use in response to changing abiotic conditions is important for effective conservation management. For bull sharks (Carcharhinus leucas), habitat use has been widely examined in the eastern and western Gulf of Mexico; however, knowledge of their movements and the factors influencing them is lacking for populations in the more temperate north-central Gulf of Mexico. To examine how changes in hydrographic conditions affected the presence of young bull sharks in Mobile Bay, Alabama, thirty-five sharks were fitted with internal acoustic transmitters and monitored with an acoustic monitoring array consisting of thirty-three receivers between June …

Joint Phenotypes, Evolutionary Conflict And The Fundamental Theorem Of Natural Selection, David C. Queller

Biology Faculty Research

Multiple organisms can sometimes affect a common phenotype. For example, the portion of a leaf eaten by an insect is a joint phenotype of the plant and insect and the amount of food obtained by an offspring can be a joint trait with its mother. Here, I describe the evolution of joint phenotypes in quantitative genetic terms. A joint phenotype for multiple species evolves as the sum of additive genetic variances in each species, weighted by the selection on each species. Selective conflict between the interactants occurs when selection takes opposite signs on the joint phenotype. The mean fitness of …

Use Of Coastal Islands By Seabirds: A Tool To Guide Future Marine Protected Areas In California, Dana A. Page

Master's Projects and Capstones

Seabird breeding colonies on islands off the coast of California offer a unique tool to help guide marine spatial planning. The life histories of seabirds can be used to develop locations of ecological importance along the coast of California. Tracking methodologies and habitat modeling related to seabird habitat utilization can be used to inform management approaches which can aid in the expansion of marine protected areas (MPAs). Protecting ocean habitats will help mitigate impacts of climate change and ensure the ecosystem services provided by marine environments. Areas within the Monterey Bay National Marine Sanctuary were analyzed to locate candidate MPA …

Comparative Biology Of Three Species Of Costa Rican Haeterini, Laura Alexander

LSU New Orleans Theses and Dissertations

Documenting life history characteristics of populations, especially of herbivorous insects such as butterflies, is fundamental to the ecological study of tropical rainforests. However, we know relatively little about tropical forest butterflies. Here, I combine information gathered using the mark-release-recapture (MRR) approach with manipulative and observational experiments in a natural environment to explore aspects of the population biology of three closely-related species of Costa Rican fruit-feeding understory butterflies (Cithaerias pireta, Dulcedo polita, and Pierella helvina), specifically: vertical stratification, attraction to and persistence in fruit-baited traps, relative abundance and distribution, movement patterns, probabilities of recapture and daily survival, …

Arthropod Abundance And Diversity In Restored Longleaf Pine Savannas At Abita Creek Flatwoods Preserve, Cara B. Nighohossian

LSU New Orleans Theses and Dissertations

The objective of this study is to determine whether changes in arthropod community structure in restored longleaf pine savannas corresponds to differences in vegetation structure often associated with burn frequency. Longleaf pine savannas are fire-maintained ecosystems characteristic of the southeastern United States and have experienced severe declines (around 97%) since European settlement. Changes in fire regime have been instrumental in the declines. Restoration of these ecosystems has involved reinstitution of periodic burnings to promote and maintain vegetative characteristics of the savannas. This study investigates trends in arthropod communities from areas heavily invaded by hardwood shrubs against those dominated by longleaf …