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High Local Diversity Of Trypanosoma In A Common Bat Species, And Implications For The Biogeography And Taxonomy Of The T. Cruzi Clade, Veronika M. Cottontail, Elisabeth K. V. Kalko, Iain Cottontail, Nele Wellinghausen, Marco Tschapka, Susan L. Perkins, C. Miguel Pinto

Publications and Research

The Trypanosoma cruzi clade is a group of parasites that comprises T. cruzi sensu lato and its closest relatives. Although several species have been confirmed phylogenetically to belong to this clade, it is uncertain how many more species can be expected to belong into this group. Here, we present the results of a survey of trypanosome parasites of the bat Artibeus jamaicensis from the Panama´ Canal Zone, an important seed disperser. Using a genealogical species delimitation approach, the Poisson tree processes (PTP), we tentatively identified five species of trypanosomes – all belonging to the T. cruzi clade. A small monophyletic …

The Status Of Fishes In The Missouri River, Nebraska: Shovelnose Sturgeon (Scaphirhynchus Platorynchus), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The Shovelnose Sturgeon Scaphirhynchus platorynchus remains the most abundant riverine sturgeon species in North American despite the anthropogenic modifications that have occurred throughout their historic range; however, their populations have declined throughout Nebraska since the construction of Fort Randall and Gavins Point Dams. Therefore, the objective of this study was to present the current status of Shovelnose Sturgeon in the Missouri River along Nebraska’s border. Data was acquired from 2003 to 2012 from all reaches of the Missouri River along Nebraska’s eastern border. Catch rates of Shovelnose Sturgeon increased in a downstream trend and were highest in the reach below …

The Status Of Fishes In The Missouri River, Nebraska: Pallid Sturgeon (Scaphirhynchus Albus), Kirk D. Steffensen, Dane A. Shuman, Robert A. Klumb, Sam Stukel

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Anthropogenic alterations to the Missouri River have placed the Pallid Sturgeon (Scaphirhynchus albus) population in jeopardy and contributed to their listing as an endangered species. Pallid sturgeon were always less common than the sympatric Shovelnose Sturgeon (S. platorynchus); however, Pallid Sturgeon seemed to be more affected by river alterations as the river sturgeon ratio has become more skewed towards Shovelnose Sturgeon. Shortly after listing, population augmentation with hatchery produced Pallid Sturgeon began to supplement the diminishing wild population. Therefore, the objective of this study was to present the current population status of the Pallid Sturgeon in …

Nesting Behaviour Influences Species-Specific Gas Exchange Across Avian Eggshells, Steven J. Portugal, Golo Maurer, Gavin H. Thomas, Mark E. Hauber, Tomáš Grim, Phillip Cassey

Publications and Research

Carefully controlled gas exchange across the eggshell is essential for the development of the avian embryo. Water vapour conductance (GH2O) across the shell, typically measured as mass loss during incubation, has been demonstrated to optimally ensure the healthy development of the embryo while avoiding desiccation. Accordingly, eggs exposed to sub-optimal gas exchange have reduced hatching success. We tested the association between eggshell GH2O and putative life-history correlates of adult birds, ecological nest parameters and physical characteristics of the egg itself to investigate how variation in GH2O has evolved to maintain optimal water loss across a diverse set of nest environments. …

A Homogenizing Process Of Selection Has Maintained An 'Ultra-Slow' Acetylation Nat2 Variant In Humans, Blandine Patillon, Pierre Luisi, Estella S. Poloni, Sotiria Boukouvala, Pierre Darlu, E. Genin, Audrey Sabbagh

Human Biology Open Access Pre-Prints

N-acetyltransferase 2 (NAT2) is an important enzyme involved in the metabolism of a wide spectrum of naturally occurring xenobiotics, including therapeutic drugs and common environmental carcinogens. Extensive polymorphism in NAT2 gives rise to a wide interindividual variation in acetylation capacity which influences individual susceptibility to various drug-induced adverse reactions and cancers. Striking patterns of geographic differentiation have been described for the main slow acetylation variants of the NAT2 gene, suggesting the action of natural selection at this locus. In the present study, we took advantage of the whole-genome sequence data available from the 1000 Genomes project to investigate the …

Estimating Migration Rates Between Populations Of Zostera Marina In The San Francisco Bay, Elizabeth S. Gutierrez

STAR Program Research Presentations

Eelgrass (Zostera marina) is a highly clonal marine angiosperm that can also reproduce sexually through flowering and seed formation. In a previous study, Fst values from six microsatellite loci suggested that a perennial San Francisco Bay subpopulation at Point Molate (Richmond, California) was able to recover from a drastic 2006 die-off through seed recruitment from neighboring eelgrass subpopulations, changing its reproductive strategy from clonal to sexual. Although Fst measures continue to be widely used in population genetics, the assumptions under which they operate are not always appropriate given certain circumstances, such small population sizes and/or asymmetrical migration rates. Our summer …

Socialising Piglets In Lactation Positively Affects Their Post-Weaning Behaviour, Talia Morgan, John Pluske, David Miller, Teresa Collins, Anne L. Barnes, Françoise Wemelsfelder, Patricia A. Fleming

Sentience Collection

Although commercial farrowing sheds keep individual litters separated, previous studies have suggested that housing systems that allow socialisation of piglets pre-weaning can reduce aggression after weaning. This study tested whether pigs socialised with non-littermates pre-weaning would show less aggression during mixing at weaning (when piglets are taken from their sows and mixed in group housing), and whether socialisation influenced the time budgets or behavioural expression of piglets at weaning. In total, 353 piglets were followed from birth through to one week after weaning. Piglets from 24 sows were allowed to socialise in groups of four litters (‘socialised’ treatment group) from …

Música De Las Grullas: Una Historia Natural De Las Grullas De América, Paul A, Johnsgard, Enrique H. Weir, Karine Gil-Weir

Zea E-Books Collection

En un sábado mágico de marzo, maneje con un estudiante de postgrado hasta el valle central del Platte, al oeste de Grand Island, tanto para ver la migración primaveral de aves acuáticas como la de las grullas grises. Tal vez fue una suerte que yo no estuviera preparado emocionalmente para ver como innumerables grullas salpicaban el cielo de horizonte a horizonte, o girando grácilmente sus cabezas como si estuvieran atrapados en algún torbellino de ultra cámara lenta, su vibrato produce una cadencia descendente como la música de un coro aviar angelical. Desde los días de mi infancia, cuando, por primera …

The Trehalose Pathway In Maize: Conservation And Gene Regulation In Response To The Diurnal Cycle And Extended Darkness, Clémence Henry, Samuel W. Bledsoe, Allison Siekman, Alec Kollman, Brian M. Waters, Regina Feil, Mark Stitt, L. Mark Lagrimini

Department of Agronomy and Horticulture: Faculty Publications

Energy resources in plants are managed in continuously changing environments, such as changes occurring during the day/night cycle. Shading is an environmental disruption that decreases photosynthesis, compromises energy status, and impacts on crop productivity. The trehalose pathway plays a central but not well-defined role in maintaining energy balance. Here, we characterized the maize trehalose pathway genes and deciphered the impacts of the diurnal cycle and disruption of the day/night cycle on trehalose pathway gene expression and sugar metabolism. The maize genome encodes 14 trehalose-6-phosphate synthase (TPS) genes, 11 trehalose-6-phosphate phosphatase (TPP) genes, and one trehalase gene. Transcript abundance of most …

Natural Infections Of Tetrathyridia Of Mesocestoides Species In Deer Mice, Peromyscus Maniculatus, From New Mexico, John E. Ubelaker, Nora Abdullah, Aya Mouhaffel, Rashmi Ananadampillair, Caitlyn Emigh, Scott Lyell Gardner

Papers in Parasitology

At Southern Methodist University campus about 6 miles south of Taos, New Mexico, we recovered tetrathyridia of Mesocestoides in five Peromyscus maniculatus in the summers of 2008 (3 of 129, 0.023%), 2009 (0 of 98, 0%), 2010 (1 of 112, 0.008%), 2011 (0 of 88, 0%), and 2012 (1 of 86, 0.011%). Tetrathyridia from the body cavity of one of the five infected mice were injected into the peritoneal cavity of laboratory white mice, Mus musculus. Our later examination of the laboratory mice revealed heavy infections of tetrathyridia continuing to reproduce asexually. Here we provide important new information on …

Natural Infections Of Tetrathyridia Of Mesocestoides Species In Deer Mice, Peromyscus Maniculatus, From New Mexico, John E. Ubelaker, Norah Abdullah, Aya Mouhaffel, Rashmi Ananadampillair, Caitlyn Emigh, Scott Lyell Gardner

Harold W. Manter Laboratory of Parasitology: Faculty Publications

At Southern Methodist University campus about 6 miles south of Taos, New Mexico, we recovered tetrathyridia of Mesocestoides in five Peromyscus maniculatus in the summers of 2008 (3 of 129, 0.023%), 2009 (0 of 98, 0%), 2010 (1 of 112, 0.008%), 2011 (0 of 88, 0%), and 2012 (1 of 86, 0.011%). Tetrathyridia from the body cavity of one of the five infected mice were injected into the peritoneal cavity of laboratory white mice, Mus musculus. Our later examination of the laboratory mice revealed heavy infections of tetrathyridia continuing to reproduce asexually. Here we provide important new information on the …

Systematics Of The Neotropical Genus Leptodactylus Fitzinger, 1826 (Anura: Leptodactylidae): Phylogeny, The Relevance Of Non-Molecular Evidence, And Species Accounts, Rafael O. De Sá, Taran Grant, Arley Camargo, W. R. Heyer, María Laura Ponssa, Edward Stanley

Biology Faculty Publications

A phylogeny of the species-rich clade of the Neotropical frog genus Leptodactylus sensu stricto is presented on the basis of a total evidence analysis of molecular (mitochondrial and nuclear markers) and non-molecular (adult and larval morphological and behavioral characters) sampled from > 80% of the 75 currently recognized species. Our results support the monophyly of Leptodactylus sensu stricto, with Hydrolaetare placed as its sister group. The reciprocal monophyly of Hydrolaetare and Leptodactylus sensu stricto does not require that we consider Hydrolaetare as either a subgenus or synonym of Leptodactylus sensu lato. We recognize Leptodactylus sensu stricto, Hydrolaetare, Adenomera, and Lithodytes …

A Threat To New Zealand's Tuatara Heats Up, Kristine L. Grayson, Nicola J. Mitchell, Nicola J. Nelson

Biology Faculty Publications

No matter how many times we head to one of New Zealand's offshore islands, the feelings are always a mix of sheer awe at the beauty and biodiversity preserved in these special refuges and lingering nerves. Did we remember all the gear? Do we have enough food and water in case we get stuck? Can the helicopter land on the side of a cliff in these winds? These epic journeys are in pursuit of a lone remnant of the reptile evolutionary tree, with a unique ecology that has big implications under climate change.

A Review Of The Removal Of Arundo Donax From A Riparian Area Within San Timoteo Canyon, Catherine E. Howe

Electronic Theses, Projects, and Dissertations

A site within San Timoteo Canyon was revisited, 13-14 years after treatment, to look at long-term effects of Arundo donax removal. The data obtained were used to determine whether A. donax had re-invaded, other non-native species had established the area, or if native species were able to grow in place of the removed A. donax. The previous removals included a combination of grinding large patches of A. donax and then foliar spraying, foliar spraying of uncut plants, and direct spraying of hand cut stems, depending upon the location and size of the plant. The effects of the A. donax …

Niche Differentiation In Meta Bourneti And M. Menardi (Araneae, Tetragnathidae) With Notes On The Life History, Stefano Mammola, Marco Isaia

International Journal of Speleology

Meta menardi and M. bourneti are two species of spiders inhabiting caves and other subterranean habitats. The occurrence of both species within the same cave has never been proved convincingly and several authors hypothesized a complete niche differentiation mainly based on microclimatic conditions.In order to study the apparent niche differentiation of the two species, we studied several populations of M. menardi and M. bourneti occurring in six caves in the Western Italian Alps (NW Italy). A series of squared plots were monitored monthly from March 2012 to February 2013. At each survey, we counted individuals and we collected the main …

The Genomic Architecture Of Population Divergence Between Subspecies Of The European Rabbit, Miguel Carneiro, Frank W. Albert, Sandra Afonso, Ricardo J. Pereira, Hernan Burbano, Rita Campos, Jose Melo-Ferreira, Jose A. Blanco-Aguiar, Rafael Villafuerte, Michael W. Nachman, Jeffrey M. Good, Nuno Ferrand

Biological Sciences Faculty Publications

The analysis of introgression of genomic regions between divergent populations provides an excellent opportunity to determine the genetic basis of reproductive isolation during the early stages of speciation. However, hybridization and subsequent gene flow must be relatively common in order to localize individual loci that resist introgression. In this study, we used next-generation sequencing to study genome-wide patterns of genetic differentiation between two hybridizing subspecies of rabbits (Oryctolagus cuniculus algirus and O. c. cuniculus) that are known to undergo high rates of gene exchange. Our primary objective was to identify specific genes or genomic regions that have resisted …

Interaction Between Insecticide Exposure And Trematode Infection Across Four Wood Frog Populations, Michael J. Hiatt, Jessica Hua Dr., Vanessa Wuerthner, Jason Hoverman Dr.

The Summer Undergraduate Research Fellowship (SURF) Symposium

Amphibian populations are declining worldwide due to a number of stressors including pesticides and parasites. Conservation of these animals can be complicated because populations can differ dramatically in response to the same stressor. When consistently exposed to pesticides, some populations evolve tolerance through the process of natural selection acting across multiple generations. Alternatively, populations that are intermittently exposed to pesticides induce tolerance within a single generation. To date, however, there have been few studies examining the costs associated with these different stress tolerance mechanisms. In this study, we examined how difference in stress tolerance influence susceptibility to parasitic infections. We …

Mother Convict Cichlids Inflict More Bites Upon An Intruder In Hot Temperatures, Jesse L. Heckendorf

STAR Program Research Presentations

Convict cichlids (Archocentrus nigrofasciatus) have developed to be extremely good parents by protecting their brood. Parental care leads to aggressive biting, chasing, and gill flaring to intimidate known predators. In this experiment, we show that environmental factors, such as the changing of temperature in this case, affect a female convict cichlid’s aggression toward caring for her offspring when an intruder is introduced. Females attack more in warmer water.

Efficacy Of An Electronic Scarecrow On 4 Mammalian Crop-Raiders In Limpopo Province, South Africa, Merrie Renee Richardson

Masters Theses & Specialist Projects

In South Africa, 2 primate species, Chacma baboons (Papio ursinus) and vervet monkeys (Chlorocebus pygerythrus), and 2 nocturnal mammals, Cape porcupine (Hystrix africaeaustralis) and bushbuck (Tragelaphus scriptus), are among many species of crop raiders. Currently, cost-effective, non-lethal solutions are lacking. From June through December 2012, I installed novel electronic scarecrows on two commercial citrus orchards and a private reserve and used video-recording remote cameras to assess cropraiders’ reactions to them in Limpopo Province, South Africa. I used focal animal sampling data from treatment and control group animals to examine differences in activity …

Are Local Filters Blind To Provenance? Ant Seed Predation Suppresses Exotic Plants More Than Natives, Dean Pearson, Nadia S. Icasatti, Jose L. Hierro, Benjamin J. Bird

Biological Sciences Faculty Publications

The question of whether species’ origins influence invasion outcomes has been a point of substantial debate in invasion ecology. Theoretically, colonization outcomes can be predicted based on how species’ traits interact with community filters, a process presumably blind to species’ origins. Yet, exotic plant introductions commonly result in monospecific plant densities not commonly seen in native assemblages, suggesting that exotic species may respond to community filters differently than natives. Here, we tested whether exotic and native species differed in their responses to a local community filter by examining how ant seed predation affected recruitment of eighteen native and exotic plant …

Historic Distribution And Ecology Of Tall-Grass Prairie In Western Canada, Darcy C. Henderson, Nicola Koper

The Prairie Naturalist

Rapid settlement and agricultural development of western Canada in the late 1800s and early 1900s nearly eliminated the tall-grass prairie, and pre-empted a detailed description by ecologists. A combination of literature review and historical ecological analysis of soils, climate, and composition data are applied to estimate the historic distribution, and area occupied by tall-grass prairie in southern Manitoba and southeastern Saskatchewan, Canada. The resulting area estimate of 20,830 km² is more than three times any previously reported value. Some confusion of terms from the first half of the 1900s, and the impact of invasive species on vegetation patterns observed …

Prairie Restoration: Bridging The Past And The Future, Daryl D. Smith

The Prairie Naturalist

Tallgrass prairie once dominated most of mid-continent North America. Conversion of this prairie to cropland was rapid and extensive. Today, it is the most decimated ecosystem in North America with less than two percent remaining. Prairie reconstruction began at the University of Wisconsin Arboretum in the 1930s. Thirty years later, exemplary initiatives by a group of highly motivated restorationists in Illinois and Iowa became a part of the legacy of restoration ecology. Their work generated widespread public interest in prairie restoration and initiated the ongoing biennial North American Prairie Conference. Since then, practitioners have made significant advances in reconstruction and …

Examining The Impacts Of State Route 101 On Wildlife Using Road Kill Surveys And Remote Cameras, Sara Ann Snyder

Master's Theses

Roads can negatively impact the survival of wildlife populations through additional mortality from road kill and population fragmentation caused by road avoidance behaviors. The 11.9 mile section of State Route 101 between the towns of San Luis Obispo and Atascadero, CA, USA, cross a mountain lion movement corridor and an area important to maintaining ecological connectivity between protected lands in the Los Padres National Forest to the north and south.

I examined the spatial patterns and landscape and roadway factors associated with road kill occurrence for six taxa; large mammals, mesocarnivores, squirrels, rabbits, birds and raptors. Between 1 May 2009 …

Biological Condition Of Money Pont Benthic Communities, Southern Branch Of The Elizabeth River (2010 And 2013), Daniel M. Dauer

Elizabeth River Reports

Executive Summary

The subtidal macrobenthic communities off Money Point in the Southern Branch of the Elizabeth River were quantitatively sampled in summer 2010 (Dauer 2011). The designated Money Point study area was part of a sediment contaminant remediation effort. The primary objectives of the present study were to: (1) characterize the biological health of the benthos of Money Point comparing pre-remediation (2010) and post-remediation (2013) conditions and (2) assess the effectiveness of the sediment contamination remediation efforts with respect to Money Point benthos. In this report the macrobenthic communities off Money Point were resampled in the summer of 2013 after …

Effects Of Large Scale Growing Season Prescribed Burns On Movement, Habitat Use, Productivity, And Survival Of Female Wild Turkey On The White Rock Ecosystem Restoration Project Of The Ozark-St. Francis National Forest, Henry Tyler Pittman

Graduate Theses and Dissertations

Restoration of woodland and savanna ecosystems has become a common management strategy in the Central Hardwoods region. Over the past two decades forest managers have implemented woodland and savanna restoration at the landscape level (≥10,000 ha), especially using early growing season prescribed fire. The implementation of the restoration strategy has coincided with declines of Eastern Wild Turkey (Meleagris gallopavo silvestris) in many treated areas causing concern that early growing season prescribed fire was impacting wild turkey. We initiated our study to examine the effect of woodland and savanna restoration on the ecology and habitat of wild turkey in the Ozark …

Quantifying Habitat Relationships Of Songbirds In Quaking Aspen (Populus Tremuloides) And Other Montane Communities Of The Jarbidge Mountains, Nevada, Kevin Patrick Glueckert

Boise State University Theses and Dissertations

Quaking aspen (Populus tremuloides) woodlands are expected to be sensitive to climate change, and have declined in parts of the West. Great Basin mountain ranges may be near the limits of aspen’s climatic threshold, in terms of temperature and aridity, and thus are particularly vulnerable to climate change. Birds associating with aspen are likely to undergo regional population fluctuations and changes in distribution as a result of changes in aspen availability or distribution. Thus, understanding the habitat relationships of avian communities in aspen and other montane cover types is important for tracking the impacts of future landscape change. …

Temperature Alters Food Web Body-Size Structure, Jean P. Gibert, John P. Delong

School of Biological Sciences: Faculty Publications

The increased temperature associated with climate change may have important effects on body size and predator– prey interactions. The consequences of these effects for food web structure are unclear because the relationships between temperature and aspects of food web structure such as predator–prey body-size relationships are unknown. Here, we use the largest reported dataset for marine predator–prey interactions to assess how temperature affects predator–prey body-size relationships among different habitats ranging from the tropics to the poles. We found that prey size selection depends on predator body size, temperature and the interaction between the two. Our results indicate that (i) predator–prey …

South Atlantic Stream Fish Assemblages: Multi-Scale Structuring Factors, Trait Associations And Channelization, And Responses To Dam Removal, Cathy Marion

All Dissertations

South Atlantic coastal plain wadeable streams are unique and understudied freshwater environments that provide crucial habitats for a wide range of aquatic taxa. In Chapter 1, we investigated patterns in fish assemblages across South Carolina's coastal plain, and developed statistical models to identify the dominant multi-scale abiotic environmental factors that influence assemblage structure. Our analyses indicated the presence of four predominant fish assemblages that commonly occur in the coastal plain, which we termed the: 1) fluvial, 2) eastern mudminnow, 3) centrarchid, and 4) non-fluvial assemblages. Natural geographic gradients and instream habitat parameters associated with velocity, channel form, stream size, and …

Venturing Through The Tall Grass: Experiencing The Manitoba Tall Grass Prairie Preserve, Christie L. Borkowsky, Erin Zahradka

The Prairie Naturalist

The Manitoba Tall Grass Prairie Preserve (hereafter the Preserve) was established in 1989 with a goal of protecting a vanishing habitat and to educate the general public of the importance of native grasslands (M. Latta, Nature Manitoba, personal communication). Starting in the early 1990s, an annual Prairie Day event was organized in early August to provide a means of interaction between prairie enthusiasts, the general public and local residents. Self-guiding interpretive trails with rustic amenities were established in 1996 and 2004. School programs, tours, and a simple two-page newsletter have been used to promote the Preserve and bring out visitors …

Project Prairie And Tallgrass Education On The Rice Lake Plains: A Journey From 1870 To Today And Beyond, Todd Farrell, Mark Rupke, Mark Stabb

The Prairie Naturalist

Project Prairie began in 2011 as a curriculum-linked integrated environmental studies program to showcase the Rice Lake Plains (RLP), a tallgrass prairie landscape of sandy rolling hills located at the eastern extent of the Oak Ridges Moraine in southern Ontario. Project Prairie provides educators both indoor and outdoor activities that support their curriculum and share the story of the RLP. Project Prairie provides teacher and student resources that focus on the RLP from the mid-nineteenth century to present day. Learning objectives of Project Prairie are developed from the subjects of science, social science, language arts, geography, history, and Aboriginal culture. …