Digital Commons Network^™

Mode And Rate Of Evolution Of Haemosporidian Mitochondrial Genomes: Timing The Radiation Of Avian Parasites, M. Andreína Pacheco, Nubia E. Matta, Gediminas Valkiūnas, Patricia G. Parker, Beatriz Mello, Craig E. Stanley Jr., Miguel Lentino, Maria Alexandra Garcia-Amado, Michael Cranfield, Sergei L. Kosakovsky Pond, Ananias A. Escalante

Harold W. Manter Laboratory of Parasitology: Library Materials

Haemosporidians are a diverse group of vector-borne parasitic protozoa that includes the agents of human malaria; however, most of the described species are found in birds and reptiles. Although our understanding of these parasites’ diversity has expanded by analyses of their mitochondrial genes, there is limited information on these genes’ evolutionary rates. Here, 114 mitochondrial genomes (mtDNA) were studied from species belonging to four genera: Leucocytozoon, Haemoproteus, Hepatocystis, and Plasmodium. Contrary to previous assertions, the mtDNA is phylogenetically informative. The inferred phylogeny showed that, like the genus Plasmodium, the Leucocytozoon and Haemoproteus genera are not monophyletic groups. Although …

Bioleaching Potential Of Filamentous Fungi To Mobilize Lithium And Cobalt From Spent Rechargeable Li-Ion Batteries, Aldo Lobos

USF Tampa Graduate Theses and Dissertations

Demand for lithium (Li) and cobalt (Co) is on the rise, due in part to their increased use in rechargeable Li-ion batteries (RLIB). Current recycling processes that utilize chemical leaching efficiently recover in Li and Co from the cathode material in spent batteries; however, these processes are costly and emit hazardous waste into the environment. Therefore, a more sustainable process for recycling Li and Co is needed, and bioleaching may provide a solution. Fungal bioleaching has been shown in previous studies to effectively mobilize metals (Pb, Al, Mn, Cu, and Zn) from mine tailings, electronic scrap, and spent batteries with …

Cryptic Diversity And Discordance In Single‐Locus Species Delimitation Methods Within Horned Lizards (Phrynosomatidae: Phrynosoma), Christopher Blair, Robert W. Bryson Jr.

Publications and Research

Biodiversity reduction and loss continues to progress at an alarming rate, and thus there is widespread interest in utilizing rapid and efficient methods for quantifying and delimiting taxonomic diversity. Single-locus species-delimitation methods have become popular, in part due to the adoption of the DNA barcoding paradigm. These techniques can be broadly classified into tree-based and distance-based methods depending on whether species are delimited based on a constructed genealogy. Although the relative performance of these methods has been tested repeatedly with simulations, additional studies are needed to assess congruence with empirical data. We compiled a large data set of mitochondrial ND4 …

Catalinia, A New Scorpion Genus From Southern California, Usa And Northern Baja California, Mexico (Scorpiones: Vaejovidae), Michael E. Soleglad, Richard F. Ayrey, Matthew R. Graham, Victor Fet

Euscorpius

Genus Catalinia, gen. nov. (Scorpiones: Vaejovidae) is described from southern California, USA and Baja California, Mexico. The genus is composed of four species formerly placed in Pseudouroctonus: Catalinia minima (Kraepelin, 1911), comb. nov. (type species), C. andreas (Gertsch et Soleglad, 1972), comb. nov., C. castanea (Gertsch et Soleglad, 1972), comb. nov., and C. thompsoni, comb. nov. (Gertsch et Soleglad, 1972). Major diagnostic characters of Catalinia include a carapace with a very weak anterior indentation, a very stout metasoma with little or no tapering from segment I to V, and a mating plug with two partial bases. …

Descripción De Una Nueva Especie Del Genero Tetraleurodes Cockerell (Hemiptera: Aleyrodidae) Y Clave Para Las Especies De México, Oscar Ángel Sánchez-Flores, Vicente Emilio Carapia-Ruiz, Oswaldo García-Martínez, José Angel Villarreal-Quintanilla, Antonio Castillo-Gutiérrez

Insecta Mundi

Se describe con medidas, dibujos e imágenes obtenidas con microscopio compuesto, una nueva especie de mosca blanca, Tetraleurodes dorsibandas Sánchez y Carapia sp. nov. (Hemiptera: Aleyrodidae) que se encontró alimentándose de Casimiroa edulis (Rutaceae) y Ehretia tinifolia (Boraginaceae) en Morelos y Oaxaca (México), respectivamente. La especie se diferencia de Tetraleurodes perileuca (Cockerell) por tener el raquis en forma de bandas, presentar estructuras en forma de mosaico irregular en la parte media de los segmentos abdominales y la presencia de setas cefálicas. Se proporciona una clave de las especies de México y se enlistan las especies del nuevo mundo.

A …

Assessment Of Intra And Interregional Genetic Variation In The Eastern Red-Backed Salamander, Plethodon Cinereus, Via Analysis Of Novel Microsatellite Markers, Alexander C. Cameron

Biology

The red-backed salamander (Plethodon cinereus) has long-served as a model system in ecology, evolution, and behavior, and studies surveying molecular variation in this species have become increasingly common over the past decade. However, difficulties are commonly encountered when extending microsatellite markers to populations that are unstudied from a genetic perspective due to high levels of genetic differentiation across this species’ range. To ameliorate this issue, we used 454 pyrosequencing to identify hundreds of microsatellite loci. We then screened 40 of our top candidate loci in populations in Virginia, Pennsylvania, and Ohio—including an isolated island population ~ 4.5 km off the …

Trophic Roles Of Tadpoles In Tropical Australian Streams, Katrin Schmidt, Melanie L. Blanchette, Richard G. Pearson, Ross A. Alford, Aaron M. Davis

Research outputs 2014 to 2021

Tadpoles can be abundant consumers in stream ecosystems, and may influence the structure and function of streams through their feeding activities and interactions with other organisms. To understand the contribution of tadpoles to stream functioning, and the potential impact of their loss, it is necessary to determine their diets and how they might influence food-web structure. Using gut-content analysis and stable-isotope analysis of N and C, we determined the main food sources and trophic positions of tadpoles of five native frog species, invertebrates, and fish in upland and lowland Australian Wet Tropics streams. Omnivory was prevalent among the tadpoles and …

Effects Of A Beach Nourishment Project In Jamaica Bay, New York, On Horseshoe Crab (Limulus Polyphemus) Spawning Activity And Egg Deposition, Christina P. Colon

Publications and Research

Restoration of horseshoe crab spawning habitats through beach nourishment may be considered as a potential strategy to enhance reproductive success in areas where estuarine beaches have been lost to coastal erosion and development. The US Army Corps of Engineers performed a beach nourishment project at Plumb Beach (Jamaica Bay, Brooklyn, NY) in 2012 to stabilize the shoreline. While the addition of sand was done to protect infrastructure, it created an opportunity to examine the responses of American horseshoe crabs (Limulus polyphemus) to beach nourishment using a BACI (before-after control impact) design. During Spring 2012, be fore beach nourishment, horseshoe crabs …

How Useful Is Gsv As An Environmental Observation Tool? An Analysis Of The Evidence So Far., Katherine Nesse, Leah Airt

SPU Works

Researchers in many disciplines have turned to Google Street View to replace pedestrian- or carbased in-person observation of streetscapes. It is most prevalent within the research literature on the relationship between neighborhood environments and public health but has been used as diverse as disaster recovery, ecology and wildlife habitat, and urban design. Evaluations of the tool have found that the results of GSV-based observation are similar to the results from in-person observation although the similarity depends on the type of characteristic being observed. Larger, permanent and discrete features showed more consistency between the two methods and smaller, transient and judgmental …

The Utility Of Bioenergetics Modelling In Quantifying Predation Rates Of Marine Apex Predators: Ecological And Fisheries Implications, A. Barnett, M. Braccini, C. L. Dudgeon, N. L. Payne, K. G. Abrantes, M. Sheaves, E. P. Snelling

Fisheries Research Articles

Predators play a crucial role in the structure and function of ecosystems. However, the magnitude of this role is often unclear, particularly for large marine predators, as predation rates are difficult to measure directly. If relevant biotic and abiotic parameters can be obtained, then bioenergetics modelling offers an alternative approach to estimating predation rates, and can provide new insights into ecological processes. We integrate demographic and ecological data for a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus, with energetics data from the literature, to construct a bioenergetics model to quantify predation rates on key fisheries species in …

The North American Quails, Partridges, And Pheasants, Paul A. Johnsgard

Zea E-Books Collection

This book documents the biology of six species of New World quails that are native to North America north of Mexico (mountain, scaled, Gambel’s, California, and Montezuma quails, and the northern bobwhite), three introduced Old World partridges (chukar, Himalayan snowcock, and gray partridge), and the introduced common (ring-necked) pheasant. Collectively, quails, partridges, and pheasants range throughout all of the continental United States and the Canadian provinces. Two of the species, the northern bobwhite and ring-necked pheasant, are the most economically important of all North American upland game birds. All of the species are hunted extensively for sport and are highly …

Handicap Principle Implies Emergence Of Dimorphic Ornaments, Sara Clifton, Daniel M. Abrams, Rosemary I. Braun

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Cnemidophorus Sexlineatus And The Impacts The Environment Has On Its Population At The Braidwood Dunes, Jeremiah Soto

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Mismeasured Mortality: Correcting Estimates Of Wolf Poaching In The United States, Adrian Treves, Kyle A. Artelle, Chris T. Darimont, David R. Parsons

Wildlife Population Management Collection

Measuring rates and causes of mortalities is important in animal ecology and management. Observing the fates of known individuals is a common method of estimating life history variables, including mortality patterns. It has long been assumed that data lost when known animals disappear were unbiased. We test and reject this assumption under conditions common to most, if not all, studies using marked animals. We illustrate the bias for 4 endangered wolf populations in the United States by reanalyzing data and assumptions about the known and unknown fates of marked wolves to calculate the degree to which risks of different causes …

Surveys Of The Street And Private Dog Population: Jamnagar, Gujarat India, Tamara Kartal, Amit Chaudhari

Stray and Feral Animal Populations Collection

Humane Society International (HSI) conducted two dog population surveys in all 4 Zones of Jamnagar (human population of 609,613). One was a street dog survey and the other was a survey of the private (pet) dog population.

Investigation Of Seed And Seedling Predation And Natural History Of Bushveld Savanna Rodents, Christopher Banotai

Masters Theses & Specialist Projects

There is currently a decline in large, old trees within many ecosystems where they play important ecological and economic roles. One ecosystem suffering from this decline is the bushveld savanna of South Africa. One particularly important species in decline is the ecologically, economically, and culturally significant marula tree (Sclerocarya birrea subsp. caffra). This species’ decline is characterized by a steep drop in recruitment of seedlings into the population. Rodents are known to influence plant communities across many ecosystems through herbivory of adult plants as well as predation of seeds and seedlings. This research provides a record of rodent species present …

Community Management And Governance Of Comatsa-Sud New Protected Area (Ambalamanasy Ii Commune), Allison Tennant

Independent Study Project (ISP) Collection

Community-based natural resource management is an increasingly more popular choice for governments to delegate power back to local communities to conserve the resources they rely on. In Madagascar, where much of the rural population provides for their livelihoods by using natural resources, this governance structure, in cooperation with delegated manager for assistance, presents an opportunity for economic development in cooperation with conservation efforts. This paper aims to better understand the role of community, NGO, and governmental actors in creating and executing community management structures. Through Participatory Rural Analysis and structured and semi-structured interviews, it explores what management transfers look like …

Predation On Artificial Turkey Nests At Radford Army Ammunition Plant In Western Virginia, Shane Brandes, Karen E. Powers, Len L. Diioia Jr.

Virginia Journal of Science

Because ground-nesting wild turkeys (Meleagris gallopavo) may sustain high incidences of nest predation in western Virginia, determining their predators is essential to understanding risk and managing the birds.  Our study investigated potential predators of wild turkey nests at the Radford Army Ammunition Plant, New River Unit (RFAAP; Pulaski Co., in western Virginia). Here, we established 8 artificial nests during the breeding season for wild turkey (March-April, 2017), and documented predators via game cameras.  Thirty-one species of mammals and birds visited the nests over the 31-day study. Nest predation was verified 56 times across 6 species, including coyotes ( …

Field Evidence Challenges The Often-Presumed Relationship Between Early Male Maturation And Female-Biased Sexual Size Dimorphism, Marie Claire Chelini, Eileen Hebets

Eileen Hebets Publications

Female-biased sexual size dimorphism (SSD) is often considered an epiphenomenon of selection for the increased mating opportunities provided by early male maturation (i.e., protandry). Empirical evidence of the adaptive significance of protandry remains nonetheless fairly scarce. We use field data collected throughout the reproductive season of an SSD crab spider, Mecaphesa celer, to test two hypotheses: Protandry provides fitness benefits to males, leading to female-biased SSD, or protandry is an indirect consequence of selection for small male size/large female size. Using field-collected data, we modeled the probability of mating success for females and males according to their timing of …

A Study Of Reptile Community Diversity Related To Habitat Characteristics At Marojejy National Park, Julia Kowala

Independent Study Project (ISP) Collection

Marojejy National Park is known for its diversity. Though it is home to the silky sifaka, it has extensive populations of herpetofauna. Seventy-seven species of reptiles have been documented in Marojejy National Park. This study aimed to evaluate the reptile community diversity and habitat characteristics in the park through systematic searches of ten-by-ten-meter plots, and inventory of species as they were found throughout the park. Systematic searches yielded the finding of 19 of the total 25 species identified. Some species that were found had not been previously seen at Marojejy before, most notably, Brookesia sp. “Nosy Hara”, Brookesia desperata, Furcifer …

Counting Crabs: Assessment Of Mangrove Crab Diversity And Density Among Three Sites In Ushongo, Tanzania, Clarasophia Gust

Independent Study Project (ISP) Collection

This study assessed the density and diversity of crabs across three mangrove forest zones in Ushongo, Tanzania. The aim was to understand variance in the composition and distribution of mangrove crabs in relation to mangrove tree composition gradients in the area. Sites were measured using a 200m line transect and 40-plot method. Data was also collected from a sand beach habitat to compare to the diversity and distribution of mangrove habitats. Diversity was analyzed using Simpson’s Index of Diversity and an ANOVA test on the average number of species found per plot in each site. Density was analyzed using an …

Hummingbird Foraging Preference: The Hierarchical Impacts Of Color, Position, And Concentration On Visitation Frequency, Erin O'Connor

Independent Study Project (ISP) Collection

Hummingbirds are well adapted to efficiently locate high quality nectar sources, but relatively few studies have examined the mechanisms of that process under natural conditions in the field. This study investigates the visual signals that allow hummingbirds to do just that, as well as the external factors that limit their choices in foraging. More specifically, feeder color and nectar concentration were manipulated to determine the effect of those independent variables on visitation frequency. An initial experiment was conducted in order to explore color preference among the visiting species. Red, orange, and blue feeders were filled with nectar of equal concentrations …

Effects Of Livestock Grazing On Rangeland Biodiversity: A Meta-Analysis Of Grouse Populations, Seth J. Dettenmaier, Terry A. Messmer, Torre J. Hovick, David K. Dahlgren

Wildland Resources Faculty Publications

Livestock grazing affects over 60% of the world’s agricultural lands and can influence rangeland ecosystem services and the quantity and quality of wildlife habitat, resulting in changes in biodiversity. Concomitantly, livestock grazing has the potential to be detrimental to some wildlife species while benefiting other rangeland organisms. Many imperiled grouse species require rangeland landscapes that exhibit diverse vegetation structure and composition to complete their life cycle. However, because of declining populations and reduced distributions, grouse are increasingly becoming a worldwide conservation concern. Grouse, as a suite of upland gamebirds, are often considered an umbrella species for other wildlife and thus …

An Unparalleled Opportunity For An Important Ecological Study, L. David Mech, Shannon M. Barber-Meyer, Juan Carlos Blanco, Luigi Boitani, Ludwig Carbyn, Glenn Delgiudice, Steven H. Fritts, Djuro Huber, Olof Liberg, Brent Patterson, Richard R. Thiel

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Wolves (Canis lupus) and moose (Alces americanus) have been studied since 1958 on 540-squarekilometer Isle Royale National Park, in Lake Superior. Wolves arrived there across the ice around 1949, and the population once increased to about 50, averaging about 25 annually (Mech 1966, Jordan et al. 1967, Vucetich and Peterson 2009). However, for various reasons, wolf numbers there have now dwindled to 2 nonbreeders, and the US National Park Service has proposed reintroducing 20–30 wolves over 3 years (National Park Service 2016). This situation offers an unparalleled opportunity to promote science-based management of this unique national park. …

Tracing The Genetic Footprints Of The Redbelly Yellowtail Fusilier, Caesio Cuning, Across Multiple Spatial And Evolutionary Scales, Amanda Susanne Ackiss

Biological Sciences Theses & Dissertations

Overfishing is one of the most pervasive threats to coral reef ecosystems, and management of these multi-species resources is hampered by limited species-specific population level information. The reefs in the western tropical Pacific Ocean, including the Coral Triangle, are the most bio-diverse in the world. Home to more than 400 million people, this region contains some of the most threatened coral reef ecosystems. Presented here is the first comprehensive analysis of the genetic structure of Caesio cuning, planktivorous fish inhabiting reefs in the Coral Triangle and western Pacific Ocean. Data from both classical Sanger and next-generation sequencing were analyzed …

Is Cooperative Memory Special? The Role Of Costly Errors, Context, And Social Network Size When Remembering Cooperative Actions, Jeffrey R. Stevens, Tim Winke

Jeffrey Stevens Publications

Theoretical studies of cooperative behavior have focused on decision strategies, such as tit-for-tat, that depend on remembering a partner’s last choices. Yet, an empirical study by Stevens et al. (2011) demonstrated that human memory may not meet the requirements that needed to use these strategies. When asked to recall the previous behavior of simulated partners in a cooperative memory task, participants performed poorly, making errors in 10–24% of the trials. However, we do not know the extent to which this task taps specialized cognition for cooperation. It may be possible to engage participants in more cooperative, strategic thinking, which may …

Two New Genera And Species Of Tiger Beetles From Baltic Amber (Coleoptera: Carabidae: Cicindelinae), Jürgen Wiesner, Kipling Will, Joachim Schmidt

Insecta Mundi

Two fossil tiger beetle species (Coleoptera, Carabidae, Cicindelinae) are described from Eocene Baltic amber using light microscopic and X-ray microscopic techniques. Both species are considered representatives of the subtribe Iresina Rivalier, 1971 due to the shared combination of character states: glabrous head, six labral and four suborbital setae, and glabrous pronotum. Palaeopronyssiformia groehni Wiesner, Will, and Schmidt, new genus, new species, is characterized by a glabrous and furrowed head with six labral setae, large eyes, presence of two supraorbital setae on each side, mandibles with two teeth of the incisor region, and a glabrous and furrowed pronotum. Palaeoiresina cassolai Wiesner, …

There’S More Than One Way To Climb A Tree: Limb Length And Microhabitat Use In Lizards With Toe Pads, Travis J. Hagey, Scott Hart, Matthew Vickers, Luke J. Harmon, Lin Schwarzkopf

Biology

Ecomorphology links microhabitat and morphology. By comparing ecomorphological associations across clades, we can investigate the extent to which evolution can produce similar solutions in response to similar challenges. While Anolis lizards represent a well-studied example of repeated convergent evolution, very few studies have investigated the ecomorphology of geckos. Similar to anoles, gekkonid lizards have independently evolved adhesive toe pads and many species are scansorial. We quantified gecko and anole limb length and microhabitat use, finding that geckos tend to have shorter limbs than anoles. Combining these measurements with microhabitat observations of geckos in Queensland, Australia, we observed geckos using similar …

Use Of Soil Chemical Analysis To Detect Commercial Wildlife Game Baits, Aaron Haines, Angela Fetterolf, Meta Griffin, Tristan Conrad, Steven Kennedy

Human–Wildlife Interactions

Hunters and poachers often use commercially-available, nutrient-rich baits to attract wildlife game animals. We used atomic absorption spectroscopy and ion selective electrochemical analysis techniques to determine whether two common proprietary baits (Deer Cane and Acorn Rage) would leave detectable chemical signatures in soil (i.e., Na⁺, Cl^-, and Ca⁺²). Our goal was to evaluate low cost tests which could be replicated by wildlife conservation officers in the field. To complete the evaluation we randomly placed two commercial baits on 3 sites in The Millersville University Biological Preserve in Millersville, PA. We collected soils samples from …

Humans As Prey: Coping With Large Carnivore Attacks Using A Predator-Prey Interaction Perspective, Vincenzo Penteriani, Giulia Bombieri, José María Fedriani, José Vicente López-Bao, Pedro José Garrote, Luca Francesco Russo, María Del Mar Delgado

Human–Wildlife Interactions

The number of attacks on humans by large carnivores in North America is increasing. A better understanding the factors triggering such attacks is critical to mitigating the risk of future encounters in landscape where humans and large carnivore co-exist. Since 1955, of the 632 attacks on humans by large carnivores, 106 (17%) involved predation. We draw on concepts and empirical evidence from the Predator-Prey Interaction Theory to provide insights into how to reduce predatory attacks and, thus, improve human-large carnivore co-existence. Because large carnivore-caused mortality risks for humans are comparable to those shown by other mammal species in response to …