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Molecular And Phenotypic Diversification Of A Cryptic Group Of Terrestrial Frogs From The Southern Andes Of Ecuador, Veronica Urgiles Penafiel

Electronic Theses and Dissertations, 2020-2023

The Ecuadorean Andes sustains one of the most remarkable frog diversifications. In this region, nearly one in three known species of amphibians belong to the Pristimantis genus, which contains the majority of the direct-developing terrestrial frog species. Although efforts are ongoing to understand the diversity of Pristimantis, large regions of the ecosystems they occupy remain understudied, and speciation and diversity of this genus remains poorly understood. Within this context, an interesting taxon with many unresolved questions regarding patterns and process of diversification is the Pristimantis orestes species complex which is distributed across the Paramo landscape and montane forests in the …

Heat For The Masses: Thermal Ecology Of The Western Tent Caterpillar, Victoria Dahlhoff

Graduate Student Theses, Dissertations, & Professional Papers

A unique feature of some gregarious, colonial insects is their ability to create external structures that alter environmental conditions for the entire (often family) group. A combination of physical alteration of local microhabitats and behavioral thermoregulation allows many of these animals to actively control their body temperatures, which allows them to regulate energy use and metabolism in variable thermal environments. Here I describe mechanisms of microhabitat modification and thermal regulation in the western tent caterpillar, Malacosoma californicum pluviale. Tent caterpillars build communal silk tents, whose temperatures can rise substantially above ambient air temperature. I experimentally manipulated colony sizes and examined …

Intraspecific Aggression Towards Common Bottlenose Dolphin Calves, Northern Gulf Of Mexico, Errol Ronje, Sarah Piwetz, Heidi Whitehead, Keith D. Mullin

Gulf and Caribbean Research

Infanticide has been widely documented throughout the animal kingdom, and has generally been viewed as an evolved, or adaptive behavior for the perpetrators. Infanticide motivated by increased sexual access to females with calves, or the elimination of potential genetic competition in the form of calf-directed aggression or infanticide, has been proposed for delphinids including killer whales, Indo-Pacific humpback dolphins, Guiana dolphins, and bottlenose dolphins. However, reports of intraspecific aggression towards bottlenose dolphin calves are relatively infrequent, and accounts of confirmed infanticide are rarer still. Reporting instances of intraspecific calf-directed aggression aids researchers to better understand the socio-behavioral context of these …

Antifungal Defense Molecules From Bacterial Symbionts Of North American Trachymyrmex Ants, Georgia Scherer

CMC Senior Theses

Defensive symbioses, in which microbes provide molecular defenses for an animal host, hold great potential as untapped sources of therapeutically useful antibiotics. Fungus-growing ants use antifungal defenses from bacterial symbionts to suppress pathogenic fungi in their nests. Preliminary chemical investigations of symbiotic bacteria from this large family of ants have uncovered novel antifungal molecules with therapeutic potential, such as dentigerumycin and selvamicin.

In this study, the bacterial symbionts of North American Trachymyrmex fungus-growing ants are investigated for antifungal molecules. Plate-based bioassays using ecologically-relevant fungal pathogens confirmed that these bacteria have antifungal activity. In order to purify and identify the antifungal …

Evolutionary Determinism And Convergence Associated With Water Column Transitions In Marine Fishes, Melissa Rincon-Sandoval, Emmanuelle Duarte-Ribeiro, Aaron M. Davis, Aintzane Santaquiteria, Lily C. Hughes, Carole C. Baldwin, Luisángely Soto-Torres, Arturo Acero P., H.J. Walker Jr, Kent E. Carpenter, Marcus Sheaves, Guillermo Orti, Dahiana Arcila, Ricardo Betancur-R.

Biological Sciences Faculty Publications

Repeatable, convergent outcomes are prima facie evidence for determinism in evolutionary processes. Among fishes, well-known examples include microevolutionary habitat transitions into the water column, where freshwater populations (e.g., sticklebacks, cichlids, and whitefishes) recurrently diverge toward slender-bodied pelagic forms and deep-bodied benthic forms. However, the consequences of such processes at deeper macroevolutionary scales in the marine environment are less clear. We applied a phylogenomics-based integrative, comparative approach to test hypotheses about the scope and strength of convergence in a marine fish clade with a worldwide distribution (snappers and fusiliers, family Lutjanidae) featuring multiple water-column transitions over the past 45 million years. …

Estimating The Heritability Of Plasticity Of Thermal Tolerance And Its Application In The Restoration Of Endangered Caribbean Coral, Matz O. Indergard

UNF Graduate Theses and Dissertations

Abstract

Over the last two centuries anthropogenic activity has elevated atmospheric CO₂, creating a greenhouse effect that is predicted to elevate global temperatures 1-4^o C within the century. Increases in surface temperature pose a threat to the world’s coral reefs and have been the cause of many mass bleaching events. To combat this new threat, corals must migrate, acclimate, or evolve to rising temperatures. Phenotypic plasticity, or the ability of an individual to express different phenotypes to survive in different environments, is crucial for sessile organisms since it can increase survivability in species incapable of moving to …

An Assessment Of Convergence In The Feeding Morphology Of Xiphactinus Audax And Megalops Atlanticus Using Landmark-Based Geometric Morphometrics, Edward Chase Shelburne

Master's Theses or Doctor of Nursing Practice

Convergence is an evolutionary phenomenon wherein distantly related organisms independently develop features or functional adaptations to overcome similar environmental constraints. Historically, convergence among organisms has been speculated or asserted with little rigorous or quantitative investigation. More recent advancements in systematics has allowed for the detection and study of convergence in a phylogenetic context, but this does little to elucidate convergent anatomical features in extinct taxa with poorly understood evolutionary histories. The purpose of this study is to investigate one potentially convergent system—the feeding structure of Xiphactinus audax (Teleostei: Ichthyodectiformes) and Megalops atlanticus (Teleostei: Elopiformes)—using a comparative anatomical approach to assess …

Apparent Resilience To Fire Of Native Bee (Hymenoptera: Apoidea) Communities From Upland Longleaf Pine Forests In Louisiana And Mississippi, Sara A. Simmons, Janice L. Bossart

Biological Sciences Faculty Publications

Controlled burning is an essential tool for restoration and management of Pinus palustris (Longleaf Pine) habitats, yet effects of controlled burning on insect species, including pollinators, are rarely considered in conservation planning. We used blue vane traps to sample native bees (Hymenoptera: Apoidea) at recently burned and unburned sites in 2 Longleaf Pine upland forests in Mississippi and Louisiana. Our objective was to quantify short-term effects of controlled burns given fire-return intervals of 1-2 years are now regularly employed to manage Longleaf Pine woodlands. We sampled during 2016 and 2017 and collected 1777 native bees, representing 43 species. Recent fire …

Protecting Biodiversity On National Forests: The Evolution And Implementation Of Forest Planning Regulations, Anna Wearn

Graduate Student Theses, Dissertations, & Professional Papers

In 2012, the U.S. Forest Service (USFS) promulgated new forest planning regulations that significantly altered national forest management. One of the most controversial and important advancements was the inclusion of what were meant to be stronger biodiversity protections. An analysis of USFS’s rationale in revising the biodiversity regulations provides insights into how to interpret the substantively and procedurally new ecosystem and species protections. Examining this regulatory history reveals three key changes to the manner in which national forests are required to manage and monitor biodiversity: 1) a greater reliance on science to inform planning, 2) a new emphasis on ecological …

Food Web Effects Of Lake Trout (Salvelinus Namaycush) Invasion In Northwestern Montana, Charles Wainright

Graduate Student Theses, Dissertations, & Professional Papers

Around the turn of the 20th century, lake trout (Salvelinus namaycush) were widely introduced in several lakes and reservoirs outside their native range in western North America. Since then, lake trout have become problematic in many lakes where they were introduced, causing significant declines in popular sport fishes and native species, most notably federally protected bull trout (Salvelinus confluentus). Despite evidence that invasive fish can cause cascading trophic effects in aquatic communities, the impacts of lake trout introduction / invasion on aquatic food webs remain poorly understood. Moreover, native fish restoration programs tend to focus on suppression …

Golden Eagle Resource Selection And Environmental Drivers Of Reproduction In The Northern Range Of Yellowstone National Park, David Brown Haines

Graduate Student Theses, Dissertations, & Professional Papers

In the United States (US), National Parks are considered the “crown jewels” of protected lands. However, the importance of National Parks to wildlife populations and the species that inhabit them is not often quantified, thus, requiring a better understanding of National Parks as a conservation tool. Golden eagles (Aquila chrysaetos) are a North American species of conservation concern and territories in the northern range of Yellowstone National Park (YNP) are relatively dense. However, average reproductive rates over the past ten years (2011-2020) have been low (productivity = 0.34, nest success = 28%). The contrast of high density and …

Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine

Faculty Journal Articles

Chenopodium taxa of Hawai‘i are tetraploids distinguished from other members of the circumglobally distributed genus by minute morphological characters. Because of these reasons, the geographic origin of Hawaiian Chenopodium has remained unclear. Across the Hawaiian Archipelago, Chenopodium taxa are morphologically variable and grow in highly disparate xeric habitats, especially in terms of precipitation, temperature, wind, salt spray, and solar irradiation. Habitats include dry subalpine shrublands, sandy beach strand of atolls in the Northwest Hawaiian Islands, dry forests, and precipitously tall sea cliffs of northwestern Moloka‘i. From the Moloka‘i sea cliffs, which are battered by high energy winds, salt spray, and …

Landscape Ecology And Population Genomics Of Two Sympatric Pitviper Species Across A Fragmented Appalachian Landscape, Thomas Maigret

Theses and Dissertations--Biology

Understanding the link between landscape patterns and ecological and evolutionary processes is an important prerequisite for informed wildlife conservation and management, especially in rapidly changing landscapes. Until recently, the inaccessibility of spatial and genomic data sets of sufficient resolution limited our ability to incorporate the impacts of landscape patterns into predictions of ecological and environmental outcomes. In this dissertation, I utilized several high-resolution spatial and genomic data sets to address ecological questions in a rapidly fragmenting landscape in southeastern Kentucky. Overall, my results indicate that large-scale surface coal mining is causing widespread homogenization of landforms, resulting in a uniquely permanent …

Predicting Patterns Of Gene Family Evolution In Taxa With Similar Ecological Niches, Kim Vertacnik

Theses and Dissertations--Biology

To fully understand the genetic basis of adaptation, we need to know its predictability—the extent to which specific selective pressures and contexts can yield corresponding genetic changes. In particular, the repeated colonization of similar, specialized environments by different taxa is ideal for assessing the frequency of reoccurring changes in the same genes or functions. But compared to a growing body of literature on the convergent evolution of individual genes, far less is known about the repeatability of gene family evolution, where families (defined here as groups of genes that share sequence and functional similarity from common ancestry) can expand (gain …

Limb Development In Salamanders: An Evolutionary Perspective To The Tetrapod Limb, Sruthi Purushothaman

Theses and Dissertations--Biology

Vertebrate limb is an ideal model to study growth, patterning and morphogenesis and the interplay between these processes. The developing limb bud is a three-dimensional structure and its outgrowth depends on the interaction between 2 important signaling centers: the Apical Ectodermal Ridge (AER) at the junction of the dorsal and ventral halves of the limb bud and the Zone of Polarizing activity (ZPA) in the posterior mesenchyme. These centers produce their respective key molecules and the close interplay between them specifies structures along the anterior-posterior (thumb to pinky), proximal-distal (shoulder to fingertips) and dorsal-ventral (knuckle to palm) axes.

Developmental biologists …

Diet Of A Recently Reintroduced River Otter (Lontra Canadensis) Population In Taos County, New Mexico, Gabriela Alexandra Wolf-Gonzalez

Theses and Dissertations--Forestry and Natural Resources

North American river otters (Lontra canadensis), native to every U.S. state and Canada, experienced extensive population decreases and range reduction until the mid-20th century as a result of overexploitation and habitat loss during European colonization. The last known river otter in New Mexico was killed on the Gila River in 1953, although unverified reports continued thru 2008. After a nearly 60-year absence from New Mexico, 33 adult river otters were reintroduced to the Rio Pueblo de Taos in the northern part of the state between 2008-2010; however, they were not subsequently monitored or studied. I characterized diet of …

Effects Of Shelterwood And Patch Cut Harvests On A Post White-Nose Syndrome Bat Community In The Cumberland Plateau In Eastern Kentucky, Phillip Lee Arant

Theses and Dissertations--Forestry and Natural Resources

The impact of shelterwood and patch cuts harvests on bat communities was tested at three sites in Eastern Kentucky. Shelterwood harvests had 50% of the basal area and understory removed to create a uniform spacing of residual trees. Patch cuts had 1-hectare circular openings created to remove 50% of the basal area creating an aggregated spacing of residual trees. Acoustic detectors were deployed to assess activity levels pre-harvest. Sites were then sampled from 1 – 2 years post-harvest to determine differences. Pre-harvest data revealed little acoustic activity for the Myotis spp. at two sites. The remaining site had high activity …

Bottom-Up Herbivore-Plant Feedbacks Trump Trophic Cascades In A Wolf-Elk-Grassland System, Trevor C. Weeks

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Top-down predator-prey effects that alter the abundance, biomass, or productivity of a population community across more than one link in a food web are referred to as trophic cascades. While these effects have been extensively studied in aquatic environments, fewer studies have examined trophic cascades in terrestrial ecosystems. And fewer still terrestrial studies have tested for trophic cascades between vertebrates and grassland vegetation. Across the globe, grassland plant biomass is driven by both precipitation and non-linear positive feedbacks between grazing and plant productivity, as predicted by the Intermediate Grazing Hypothesis. Yet little is known about the role that apex carnivores …

Current Dog Breeding Practices Impacts On Health And Preservation Of Purebred Dogs, Bridget E. Baker

Honors Theses and Capstones

No abstract provided.

Drought Effects On Germination Rate Of Two Sagebrush Species, Artemisia Cana And Artemisia Arbusula, And Comparison Of Seed Counts Using A Photography App And Weighing, Sam S. Kelly, Cessair E. Mckinney

Environmental Science & Management Senior Capstones

Sagebrush steppe ecosystems have been impacted by climate change, grazing, and invasive plants. While some widespread sagebrush species have been well-studied, including big sagebrush (Artemisia tridentata), others like silver sagebrush (Artemisia cana) and low sagebrush (Artemisia arbuscula) are understudied. To learn more about how to restore these important ecosystems, we conducted a germination study of two sagebrush species. We germinated seeds from A. cana in petri plates and in soil to compare the rates of germination in both methods, while A. arbuscula seeds were germinated only in petri plates. We also tested the efficiency …

Monitoring Mammal Community Shifts Across Silvicultural Treatments Utilizing Camera Traps And The Development Of Invertebrate- Derived Dna In Hardwood Forests Of North America, Shallen Gurtler

Dissertations, Master's Theses and Master's Reports

Mammal distribution and diversity is quickly changing as humans modify the landscape. In particular, silviculture, which is the practice of controlling the growth, structure, and quality of forests to meet the needs of society and the landowner, influences the habitat usage of mammals. Utilizing camera traps, I monitored shifts in mammal communities across different silviculture treatments in the northern hardwood forests of the Great Lakes region in North America. I assessed the community composition across six canopy treatments and three understory treatments with a total of 2,018 active camera trap nights with 3,321 detections over the course of 147 days. …

Livestock-Wildlife Dynamics And Subsequent Human Responses In Marginalized Communities Within Mexico’S Nationally Protected Areas, Deanna Seil

Dissertations, Master's Theses and Master's Reports

Entering the planet’s sixth mass-extinction, monitoring biodiversity and the factors which affect it is of the utmost importance. This study on the interaction of humans and their livestock with wildlife, and the impact of this interaction on wildlife conservation, took place in Santiago Coatepec, located within the Tehuacán-Cuicatlán Biosphere Reserve in Mexico. Wildlife interactions with livestock may depend upon species, season, ecological characteristics of the area, and livestock management practices. Using camera traps, field data, and interview data, I quantified livestock impact on wildlife behavior and community beliefs. Over two years, camera traps at 18 stations recorded 709 wildlife videos …

Gis-Based Trending Analysis Of Cropland Associated With Riparian From 2008 To 2018 In Wisconsin, Yanyun Li

Dissertations, Master's Theses and Master's Reports

One of important characteristics of riparian area is to protect surface and underground water from nutrient contaminated runoff from nearby farmland. Comparing with the traditional fixed-width riparian buffer delineation, the Riparian Buffer Delineation Model (RBDM) to be used in this study, is a GIS-based tool designed to map variable-width riparian buffers by taking into consideration the watercourse and its associated floodplain. As the use of biofuels increases especially derived from corn, riparian areas are often converted to agricultural fields due to the nutrient rich soils and flat topography commonly found in these locations. Meanwhile, it also gives rise to nonpoint …

Temporal Changes In Unisexual And Sexual Ambystoma Salamander Populations In Southeast Michigan, Kelsey B. Mitchell

Master's Theses and Doctoral Dissertations

Climate change drives changes in organisms’ geographic ranges that can lead to shifts in population structure. Unisexual (all female) Ambystoma salamanders reproduce via kleptogenesis, resulting in ploidy-variable offspring. I analyzed genetic data of historic and modern-day unisexual and A. laterale samples from the University of Michigan’s E. S. George Reserve using epidermal cell nuclei measurements and microsatellite loci. I found that population composition has shifted away from the more northern-distributed A. laterale and toward populations dominated by unisexuals in five out of six ponds. There was a significant relationship between the proportion of A. laterale to unisexuals and pond size …

Species Conservation & Recovery Through Adequate Regulatory Mechanisms, Sandra B. Zellmer, Sam J. Panarella, Oliver Finn Wood

Faculty Journal Articles & Other Writings

The world is experiencing its sixth episode of mass extinction of life. In rhetoric typically used by bloggers rather than scientists, the National Academy of Sciences reports that this "biological annihilation" is more dire than previously believed,' and that the decimation of biodiversity and of the ecosystem services resulting from it is nothing less than a "frightening assault on the foundations of human civilization."2

Unlike previous episodes of mass extinction, this one is caused by human overpopulation, overconsumption, and anthropogenic climate change. The United States has been a world conservation leader for over a century, but its commitment to supporting …

Black Bear, Jimmy D. Taylor, James P. Phillips

Wildlife Damage Management Technical Series

The American black bear (Ursus americanus, Figure 1) is a challenging species for wildlife agencies to manage due to its size, intelligence, extensive range, food habits, and adaptability, as well as societal views. In North America alone, agencies receive more than 40,000 complaints about black bear annually. Black bears are known as ‘food-driven’ animals, meaning most conflicts result from a bear’s drive to meet its nutritional needs. Not surprisingly, an overwhelming proportion of conflicts are related to their use of anthropogenic (human) food sources, such as garbage, bird food, and crops. Understanding what drives human-bear conflict is the first part …

Using Unmanned Aircraft Systems To Identify Invasive Species, Tithe Ahmed

Mahurin Honors College Capstone Experience/Thesis Projects

Invasive species serve as a threat to native biodiversity and ecosystem sustainability. Combatting the spread of invasive species requires long-term physical and monetary commitments. In Balule Nature Reserve of Greater Kruger National Park, South Africa, Opuntia ficus-inidica (the common prickly pear) has been a relentless invader, displacing the local flora and fauna. The goal of this project is to battle invasive species such as prickly pear using efficient and inexpensive technology: unmanned aerial vehicles (UAVs or drones) and multispectral sensors.

Using a 4-bandwidth Parrot Sequoia multispectral sensor in tandem with the DJI Phantom Pro 3^TM UAV, images of land …

Wildlife Health Systems, Lee Skerratt

Animal Sentience

Wildlife health systems aim to ensure that all animal life is healthy and resilient. They protect biodiversity and ecosystem services and ensure that the risk of spillover of pathogens is mitigated. These systems are flexible, multidisciplinary and cross-sectorial. They can manage a variety of threats to life that arise in different communities and cultures. Very small investments are required to ensure that wildlife health systems function effectively.

Asian Elephant Rescue, Rehabilitation And Rewilding, Liv Baker, Rebecca Winkler

Animal Sentience

Thailand has fewer than 10,000 elephants left. More of them are living in captivity to serve the tourist industry under grim conditions than are living free in what is left of their wild habitat. Conservation efforts need to be focused on all surviving members of the species, captive and free, but they need to take into account the inextricable entanglement of human and nonhuman animal lives in Thailand today. There is an opportunity for rescuing, rehabilitating and reintroducing captive elephants to the wild with the help of the traditional expertise of a mahout culture that has been elephant-keeping for centuries. …

A “Halfway House” For Improving Captive Welfare, Phyllis C. Lee, W. Keith Lindsay

Animal Sentience

It is certainly time to aim for higher quality management strategies for Thailand’s captive elephants, and to engage with sustainable livelihoods for traditional mahouts. Baker & Winkler’s proposal to rewild Thai elephants by placing them under the guardianship of Karen mahouts is recognized as not “wild” since it remains a form of management requiring elephants to live under the control of human caregivers. We applaud the positive welfare aims of this proposal; however, we caution that few of the long-term consequences for elephants or habitats can be known, and further considerations of elephant population dynamics and forest ecosystems are required …