Digital Commons Network^™

Degradation And Nitrogen Cycling In The Context Of Biodiversity-Ecosystem Function Relationships In The Inquiline Bacterial Community Of Darlingtonia Californica, Megan Teigen

Cal Poly Humboldt theses and projects

Biodiversity-ecosystem function (BEF) research aims to explain how species and their environments interact with each other. Microbial communities engage in vital biogeochemical pathways in a variety of natural ecosystems, and yet there are large knowledge gaps about the specific metabolic pathways in which they are involved. Degradation specifically contributes to nitrogen cycling globally through the breakdown of large organic nitrogen compounds into small inorganic nitrogen that is necessary for the survival of many other organisms. In this study, I focused on the degradative function of the inquiline microbial communities found within the carnivorous pitcher plant, Darlingtonia californica. Darlingtonia grows in …

Final Report Floating Upwelling System Harvest Road Oceans, Robert Michael, Scott Bennett

Fisheries Occasional Publications

A Floating Upwelling System or FLUPSY is a mechanical system for the culture of seed stock during the nursery stage of commercial bivalve production.

Evaluating Population Genetic Structure And Potential Genomic Signals Of Natural Selection In A Migratory Songbird (Protonotaria Citrea), Tyler A. Hohenstein

Theses and Dissertations

In this study I attempted to further resolve the population genetic structure in the Prothonotary Warbler (Protonotaria citrea), and conducted an outlier SNP analysis and exploratory gene ontology analysis to investigate potential ongoing natural selection in the species. This analysis of population structure confirms previous work by DeSaix et al. (2019), where weak population structure was observed between eastern sites along the Atlantic Coastal Plain, and western sites in the Mississippi Alluvial Valley, possibly due to a genetic discontinuity across the Appalachian Mountains. I conducted two forms of outlier SNP analyses, a principal component analysis (PCA)-based approach to identify SNPs …

On The Need For New Measures Of Phylogenomic Support, Robert C. Thomson, Jeremy M. Brown

Faculty Publications

The scale of data sets used to infer phylogenies has grown dramatically in the last decades, providing researchers with an enormous amount of information with which to draw inferences about evolutionary history. However, standard approaches to assessing confidence in those inferences (e.g., nonparametric bootstrap proportions [BP] and Bayesian posterior probabilities [PPs]) are still deeply influenced by statistical procedures and frameworks that were developed when information was much more limited. These approaches largely quantify uncertainty caused by limited amounts of data, which is often vanishingly small with modern, genome-scale sequence data sets. As a consequence, today's phylogenomic studies routinely report near-complete …

Regenerative Agriculture Effects On Invertebrate And Bird Communities And Insect-Provided Ecosystem Services, Alex Michels

Electronic Theses and Dissertations

Conventional agricultural practices can have unintended consequences on the environment and wildlife. Insects and birds are declining at rapid rates around the world, and the current conventional agricultural paradigm is a major driver through habitat loss and the intensification of production. Invertebrates in agroecosystems provide services to both farmers and the rest of society. Regenerative systems may promote the functioning of an agroecosystem by influencing invertebrate abundance, diversity, and ecosystem services and mitigate bird and insect declines through conservation practices that increase soil health, reduce disturbances, and increase biological diversity. Here I address knowledge gaps of the effects of regenerative …

Eastern Redcedar (Juniperus Virginiana L.) Encroachment On South-Central South Dakota Rangelands: Impact On Plant Communities, Austin K. Domeier

Electronic Theses and Dissertations

Grasslands historically covered 46 million km2 of Earth’s surface representing nearly 42% of the living vegetation. Encroachment of woody species onto grasslands and savannas is a widely researched global phenomenon, with eastern redcedar (ERC) (Juniperus virginiana L.) trees being the most prominent woody encroacher in the Northern Great Plains (NGP) due to the lack of prescribed fire and planted ERC escaping from shelterbelts. This encroachment poses a threat to native plant communities in terms of their reproduction, regeneration, and diversity. ERC are fierce competitors and can establish in most soil types, are drought tolerant, and prolific seed reproducers. These qualities …

Living In A Gradient: The Influence Of Water Temperature Variation On Development, Settling Time And Survival Of Pallid Sturgeon Larvae In The Missouri River, Maria Elizabeth Erceg

Electronic Theses and Dissertations

Pallid Sturgeon (Scaphirhynchus albus) are a federally endangered species experiencing widespread reproduction and recruitment failures. Recruitment failure is hypothesized to be caused by habitat modifications made to the Missouri River that disrupt connectivity and alter temperature profiles downstream of constructed dams. Hypolimnetic releases from Missouri River dams affect the temperature downstream, creating colder conditions during the downstream drifting phase for dispersing larvae. Understanding the influence of water temperature changes on larval development is crucial for recovery efforts. In this study, we evaluated the effects of water temperature daily heating rate on energy use, settling behavior, and growth rate of endogenously …

The Naming Of Homo Bodoensis By Roksandic And Colleagues Does Not Resolve Issues Surrounding Middle Pleistocene Human Evolution, Eric Delson, Chris Stringer

Publications and Research

Roksandic et al. (2022) proposed the new species name Homo bodoensis as a replacement name for Homo rhodesiensis Woodward, 1921, because they felt it was poorly and variably defined and was linked to sociopolitical baggage. However, the International Code of Zoological Nomenclature includes regulations on how and when such name changes are allowed, and Roksandic et al.'s arguments meet none of these requirements. It is not permitted to change a name solely because of variable (or erroneous) later use once it has been originally defined correctly, nor can a name be modified because it is offensive to one or more …

Spatio-Temporal Movement Patterns Of Sub-Adult Adfluvial Bull Trout, Aimee Taylor

All Master's Theses

Bull Trout in the Yakima River basin of Washington are primarily adfluvial, often using managed lakes as habitat. Kachess Lake, composed of Big and Little Kachess Lakes, is managed by the Bureau of Reclamation (BOR) for water storage. BOR plans to build a structure that can withdraw an additional 200,000 acre-feet of water in drought years, which would disconnect the two basins for multiple years. This study examined the spatio-temporal movement of sub-adult Bull Trout in Kachess Lake to understand distribution patterns and the effects of environmental variables. We sought to answer 1) does time (week of the year), diel …

Effects Of Buried Wood On The Development Of Populus Tremuloides On Various Oil Sands Reclamation Soils, Kaitlyn E. Trepanier, Laura Manchola-Rojas, Bradley D. Pinno

Aspen Bibliography

Buried wood is an important but understudied component of reclamation soils. We examined the impacts of buried wood amounts and species on the growth of the common reclamation tree species trembling aspen (Populus tremuloides). In a greenhouse study, aspen seedlings were planted into four soil types, upland derived fine forest floor-mineral mix (fFFMM), coarse forest floor-mineral mix (cFFMM), and lowland derived peat and peat-mineral mix (PMM), that were mixed with either aspen or pine wood shavings at four concentrations (0%, 10%, 20% and 50% of total volume). Height and diameter growth, chlorophyll concentration, and leaf and stem biomass were measured. …

Understanding Caribou Population Cycles, Jack R. St. John

Undergraduate Theses, Professional Papers, and Capstone Artifacts

The complex population dynamics of caribou (Rangifer tarandus) were studied to determine the patterns of their population cycles and the processes driving them. It is well established, via previous archaeological research and Indigenous knowledge, that large migrating caribou herds found in and around the tundra at northern latitudes experience population boom and busts roughly every several decades. However, the processes driving the dynamics of these cycles are relatively unknown, which makes managing caribou herds for recreational and subsistence harvests difficult. It has been hypothesized that a combination of intrinsic and extrinsic factors shape these cycles, with density-dependence, predation, …

Spatiotemporal Relationships Of Coyotes And Free-Ranging Domestic Cats As Indicators Of Conflict In Culver City, California, Rebecca N. Davenport, Melinda Weaver, Katherine C. B. Weiss, Eric G. Strauss

Center for Urban Resilience Scholarship

As habitat generalists, urban coyote (Canis latrans) populations often utilize an abundance of diverse food sources in cities. Within southern California, domestic cats (Felis catus) comprise a higher proportion of coyote diets than in other studied urban areas throughout the United States. However, it is unclear which ecological factors contribute to higher rates of cat depredation by coyotes in this region. While previous research suggests that coyote presence may have a negative effect on free-ranging domestic cat distributions, few studies have determined whether urban green spaces affect coyote or free-ranging domestic cat occurrence and activity within …

Length–Weight Relation For Seven Neotropical Freshwater Fish Species (Actinopterygii) Endemic To Central America, Justin C. Bagley, Maria Florencia Breitman, Jerald B. Johnson

Research, Publications & Creative Work

In the presently reported study, we estimated length–weight relation (LWRs) for seven species of freshwater fishes from Central America. Samples were collected using seines from 60 sites across Nicaragua, Costa Rica, and Panama during field expeditions conducted between 1997 and 2012. The fishes were preserved and transported to the lab, where their total weight (W) was measured (to nearest 0.0001 g) and standard lengths were taken (to nearest 0.01 mm). Data were collected from four livebearers (Poeciliidae), Alfaro cultratus (Regan, 1908), Phallichthys amates (Miller, 1907), Poecilia gillii (Kner, 1863), and Priapichthys annectens (Regan, 1907); the cichlids (Cichlidae), Parachromis dovii (Günther, …

Population Dynamics, Relative Abundance, And Habitat Suitability Of Adult Red Drum (Sciaenops Ocellatus) In Nearshore Waters Of The North-Central Gulf Of Mexico, Crystal Hightower, J. Marcus Drymon, Amanda E. Jefferson, Matthew B. Jargowsky, Emily A. Seubert, Simon Dedman, John Mareska, Sean P. Powers

University Faculty and Staff Publications

In the Gulf of Mexico, the red drum (Sciaenops ocellatus) is an immensely popular sportfish, yet the Gulf of Mexico stock is currently managed as data-limited in federal waters. The results of the federal stock assessment conducted in 2016 for Gulf of Mexico red drum were not recommended for providing management advice. Consequently, we sought to address data gaps highlighted in the assessment by producing up-to- date overall and sex-specific growth models, standardized indices of relative abundance, and predictions of habitat suitability and by updating estimates of natural mortality. Using a time series for the period of 2006–2018, we assigned …

Observations Of Whooping Crane Parental Provisioning Of Chicks, Glenn H. Olsen

Proceedings of the North American Crane Workshop

Crane chicks are dependent on parent birds for provisioning during the first few months of life, but no study has examined this provisioning in detail. In 2014 research staff at the U.S. Geological Survey, Eastern Ecological Science Center (formerly Patuxent Wildlife Research Center), in Laurel, Maryland, made multiple observations of parent whooping cranes (Grus americana) feeding or interacting with their chick during the 3 months from hatching to fledging. Both parents participated in the feeding of the chick and only 1 chick was raised by each pair of parent whooping cranes. Initially feeding frequency was low (0-20 times …

Surveys And Population Estimates Of A Distinctive Subpopulation Of Sandhill Cranes In The Fraser River Lowlands Of British Columbia, Myles M. Lamont

Proceedings of the North American Crane Workshop

A poorly understood subpopulation of sandhill cranes (Grus canadensis) breeds at scattered locations in the lower Fraser River Valley on the south coast of British Columbia. The area also harbors the northernmost population of overwintering sandhill cranes anywhere in its range. While sporadic monitoring has been carried out since the mid-1960s, no formal survey efforts have been attempted for the entire Fraser River lowland subpopulation. During 2014-2019 we collected groundbased survey data on presence and occupation of territories within the study area; this effort was supported by citizen science contributions. On 20 June 2019, we flew a fixed-width, …

Whooping Crane Nest Building In Southwest Indiana, Amy J. Kearns, Hillary L. Thompson, Allisyn-Marie T. Y. Gillet

Proceedings of the North American Crane Workshop

The first documented case of whooping crane (Grus americana) nest building in Indiana is described. During spring 2015, a pair of whooping cranes did not leave their wintering grounds in Gibson County, Indiana, to return to their summering area in Wisconsin. Three nest platforms were discovered after the death of the female crane. To date, this is the only documented example of a whooping crane pair in the reintroduced Eastern Migratory Population (EMP) building nest platforms outside of Wisconsin. Although fidelity to the core nesting areas in Wisconsin is strong, and natal dispersal is usually <30 km, this example from Indiana shows that whooping cranes in the EMP may have the potential to pioneer nesting areas far outside of core reintroduction areas.

Summary Of Mortality Among Captive Cranes At The International Crane Foundation: 2000–2020, Barry K. Hartup, Robert Phillips

Proceedings of the North American Crane Workshop

We reviewed mortalities of captive cranes at the International Crane Foundation (ICF) between 2000 and 2020 to provide broad insights into contemporary factors affecting the collection’s health and survival. Sixty-three deaths were documented in 13 of 15 crane species held in the ICF collection. The mean annual mortality during the study was 2.6% and the mean age (±SD) at death was 28.4 (±12.7) years. The overall total number of deaths of males and females was similar, but there was an association between sex and death of adult versus geriatric (>25 years) cranes (P < 0.01); males were more likely to die at geriatric age than females. Deaths were commonly associated with chronic health and management problems (n = 44, 79%) versus …

Florida Sandhill Crane Relocates Egg During Incubation, Timothy A. Dellinger, Miranda L. Watford, Ronald R. Bielefeld

Proceedings of the North American Crane Workshop

Anecdotal accounts of birds moving their eggs to a new location have been reported in shorebirds, waterfowl, and woodpeckers. We report relocation of an egg, 2 days prior to hatching, by an adult Florida sandhill crane (Grus canadensis pratensis). We do not know why the egg was moved, but egg movement among other species appears to be associated with nest disturbance by humans, animals, or environmental conditions.

Initial Evaluation Of Cyclic Adenosine Monophosphate Enzyme Immunoassay For Use With Crane Semen Samples, Megan E. Brown, Kim Boardman, Katie L. Edwards

Proceedings of the North American Crane Workshop

The management of ex situ and in situ populations of many wildlife species requires detailed knowledge of a species’ reproductive biology. For species such as cranes, where artificial insemination is a critical component of ex situ management strategies, understanding normal sperm function is especially important. Previous research has shown that captive cranes exhibit highly variable production and quality of semen samples produced by individual males and high levels of variation of cell concentration and motility across different species. Cyclic adenosine monophosphate (cyclic AMP) has been implicated in regulating sperm function, such as cell motility, and may affect an individual’s ability …

How Stressful Is It To Move? Whooping Crane Glucocorticoid Response During Facility Transfer, Megan E. Brown, Christopher Martin, Christopher Crowe, Sprina Lui, Nucharin Songsasen

Proceedings of the North American Crane Workshop

The ability to transfer animals between different facilities for genetic management is a critical component to the success of any cooperatively managed captive animal population despite the high cost and the need for a high level of coordination in logistical planning. Two issues of concern are the magnitude of potential stress responses incurred during shipment of adult cranes to a new facility and the duration of elevated glucocorticoid production during the acclimation periods. The objectives of this project were to assess adrenal responses of whooping cranes (Grus americana) during transfer from the Patuxent Wildlife Research Center (PWRC) to …

Wetlandology: A Kid's Book About Wetlands, Grace Gaard, Ted Lagrange

Nebraska Game and Parks Commission: Publications

What is a Wetland? You might think that any land that is wet would be a wetland, right? But if the occurrence of water was the only thing that made a wetland a wetland, then deeper parts of oceans and rivers would be considered wetlands. And we know that is not true! So, what actually makes a wetland a wetland? Wetlands are defined by three things:

1. Soil

2. Plants

3. Hydrology

Wetlands are spread throughout Nebraska, but it is useful to identify some of the larger wetland complexes in the state. Wetlands can be found everywhere! All rivers and …

Guide To Nebraska's Wetlands And Their Conservation Needs, Third Edition, 2022, Ted Lagrange

Nebraska Game and Parks Commission: Publications

Wetlands: a source of great interest, and at times conflict. Wetlands represent different things to different people. To some people they may be considered shallow, muddy nuisances whereas to others they are considered to be wonderful, varied, and productive assets. This is because wetlands take on many roles as part of an elaborate and dynamic system. Understanding wetlands requires understanding the complex and varying roles they can play. To aid in this understanding, this guide defines wetlands, discusses their importance and dynamics, identifies threats and losses, describes conservation programs, and takes an in-depth look at Nebraska’s regional wetland complexes.

Nebraska’s …

Mortality In Interspecific Hybrids Of Nasonia Vitripennis And Nasonia Giraulti, Bonnie Cobb

College of Graduate Studies: Theses & Dissertations

Nasonia is a parasitoid wasp genus that serves as an emerging model for studying speciation due to an incompatibility between nuclear and mitochondrial genomes between sister taxa. Short generation times, easy rearing in a lab setting, producing large amounts of progeny, and whole genome sequencing make Nasonia is an excellent candidate for studying incomplete reproductive isolation. Nasonia have five chromosomes and exhibit haplo-diploid sex determination in which fertilized eggs develop into diploid females and unfertilized eggs develop into haploid males. Recessive phenotypes are hidden in diploid females but are laid bare in haploid males as there is no interaction between …

Validation Of Edna Metabarcoding : A Comparison To Traditional Survey Methods In Ozark Streams, Veronica Marian Lee

Masters Theses

Environmental DNA (eDNA) sampling provides a method for assessing fish communities that has potential as a supplement to traditional sampling methods due to its ability to save time as well as its non-invasive nature. This is a method in which from just one sample, eDNA from multiple individual species are able to be sequenced in tandem and the resulting reads identified to describe a community. In order to evaluate this technique and its efficacy for monitoring fish community diversity, we collected water samples alongside surveys performed by the Missouri Department of Conservation sampling program in summers 2020-21. DNA were extracted …

The Sweet Smell Of Mystery: The Scent Glands Of Oncopeltus Fasciatus, Despina Tsitlakidou

Wayne State University Theses

Scent glands (ScGs) are defensive glands that are found among a wide variety of insect orders. These glands represent a specialized function of the exocrine system; however, the developmental mechanism remains unclear. Previous functional studies of the endocrine glands revealed that the endocrine and tracheal systems utilize similar genetic regulatory networks which indicate that these systems have common primordia. In Drosophila, sal is localized in the prothoracic gland while in Oncopeltus the gene is localized in the duct cells of the abdominal scent glands (Hanna & Popadić, 2020; Sánchez-Higueras et al., 2014). RNAi mediated knockdown of sal resulted in significant …

Temporal Stability Of Seagrass Extent, Leaf Area, And Carbon Storage In St. Joseph Bay, Florida: A Semi-Automated Remote Sensing Analysis, Marie Cindy Lebrasse, Blake A. Schaeffer, Megan M. Coffer, Peter J. Whitman, Richard C. Zimmerman, Victoria J. Hill, Kazi A. Islam, Jiang Li, Christopher L. Osburn

OES Faculty Publications

Seagrasses are globally recognized for their contribution to blue carbon sequestration. However, accurate quantification of their carbon storage capacity remains uncertain due, in part, to an incomplete inventory of global seagrass extent and assessment of its temporal variability. Furthermore, seagrasses are undergoing significant decline globally, which highlights the urgent need to develop change detection techniques applicable to both the scale of loss and the spatial complexity of coastal environments. This study applied a deep learning algorithm to a 30-year time series of Landsat 5 through 8 imagery to quantify seagrass extent, leaf area index (LAI), and belowground organic carbon (BGC) …

Effects Of Drought On Habitat Quality For Native Bees In Residential Gardens Of Claremont, Ca, Max Proctor

CMC Senior Theses

Over 1,500 of the 4000 bee species found in North America inhabit California. Native bees are declining however, largely due to climate change and agricultural intensification. Previous research shows that cities can sustain diverse bee communities, due to the diversity of ornamental flowers. Urban green space represents an opportunity for native bee conservation. Residential gardens provide lots of green space and are urban pollinator hotspots. Managing yards for increased floral resources and nesting habitat can benefit native bee communities. Turfgrass provides few floral or nesting resources and negatively correlates with bee diversity. The 2011-2017 California drought caused many homeowners to …

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 1. Model Development And Verification, Daphne M. Munroe, Eric N. Powell, John M. Klinck, Andrew M. Scheld, Sarah Borsetti, Jennifer Beckensteiner, Eileen E. Hofmann

CCPO Publications

Competing pressures imposed by climate-related warming and offshore development have created a need for quantitative approaches that anticipate fisheries responses to these challenges. This study used a spatially explicit, ecological-economic agent-based model integrating dynamics associated with Atlantic surfclam stock biology, decision-making behavior of fishing vessel captains, and fishing fleet behavior to simulate stock biomass, and fishing vessel catch, effort and landings. Simulations were implemented using contemporary Atlantic surfclam stock distributions and characteristics of the surfclam fishing fleet. Simulated distribution of fishable surfclam biomass was determined by a spatially varying mortality rate, fishing by the fleet was controlled by captain decisions …

Effects Of Environmental And Anthropogenic Factors On Loggerhead Sea Turtle (Caretta Caretta) False Crawl Rates On Jekyll Island, Ga, Brittany Byrd

UNF Graduate Theses and Dissertations

Loggerhead sea turtles (Caretta caretta) are currently listed as “vulnerable” on the IUCN Red List and are experiencing population declines across many parts of their range. These declines are caused by environmental and anthropogenic stressors which impact sea turtle ecology and behavior, including nesting behavior. One nesting behavior sea turtles exhibit is known as “false crawling,” which is when a female sea turtle ascends the beach in an attempt to nest and either abandons the attempt altogether or while in the middle of digging an egg chamber. False crawling, a largely understudied sea turtle behavior, can not only …