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W(H)Ither Fossils? Studying Morphological Character Evolution In The Age Of Molecular Sequences, Elizabeth J. Hermsen, Jonathan R. Hendricks

Faculty Publications

A major challenge in the post-genomics era will be to integrate molecular sequence data from extant organisms with morphological data from fossil and extant taxa into a single, coherent picture of phylogenetic relationships; only then will these phylogenetic hypotheses be effectively applied to the study of morphological character evolution. At least two analytical approaches to solving this problem have been utilized: (1) simultaneous analysis of molecular sequence and morphological data with fossil taxa included as terminals in the analysis, and (2) the molecular scaffold approach, in which morphological data are analyzed over a molecular backbone (with constraints that force extant …

Droughtscape, Spring 2008, Kelly Smith

DroughtScape: Quarterly Newsletter of the National Drought Mitigation Center (2007–2023)

San Angelo, April 24

Winter Sees Little Change in U.S. Drought

News Stories Reveal Array of Mitigation Strategies

NIDIS Wants You!

Sea Surface Temperatures Can Help Predict Drought

About DroughtScape

Recent Travels

California Drought, An Update April 2008, Baryohay Davidoff, Fawzi Karajeh, Dean Reynolds, Eric Senter, John Woodling

United States Geological Survey: Staff Publications

TABLE OF CONTENTS

CHAPTER 1. RECENT HYDROLOGIC CONDITIONS AND IMPACTS

Introduction....................................................... 1

Water Year 2007 .................................................. 1

Drought in the Colorado River Basin ..................................................... 5

Drought and Dry Conditions in the Early 2000s .................................... 7

The 2001 Klamath Basin Drought Emergency ............................... 11

CHAPTER 2. PROGRAMMATIC AND INSTITUTIONAL UPDATES

The San Francisco Bay-Sacramento/San Joaquin River Delta.................................................................. 15

The Colorado River .................................................................... 16

State Financial Assistance to Local Agencies.................................... 17

Urban Water Management Planning ................................................... 20

Water Transfers .............................................................................. 20

Small Water Systems and Drought Preparedness ................................. 21

The Influence Of Metal Exposure History And Ultraviolet-B Radiation On Benthic Communities In Colorado Rocky Mountain Streams, Robert E. Zuellig, Donna R. Kashian, Marjorie L. Brooks, Peter M. Kiffney, William H. Clements

Environmental Science and Geology Faculty Research Publications

Interest in understanding the influence of ultraviolet-B (UVB; 280–320 nm) radiation in aquatic ecosystems has increased since the early 1990s. Pollution from historic mining operations coupled with physicochemical characteristics of Rocky Mountain streams that increase exposure of benthic communities to UVB provided an opportunity to examine how UVB interacted with heavy metal contamination to structure stream communities. We integrated a series of UVB addition experiments done in stream microcosms with a large-scale UVB shading experiment to test the hypothesis that effects of UVB were greater on benthic communities from metal-polluted streams than from reference streams. Microcosm experiments involved short-term exposure …

A Large New Species Of Lobatus (Gastropoda: Stromnidae) From The Neogene Of The Dominican Republic, With Notes On The Genus, Bernard M. Landau, Gijs C. Kronenberg, Gregory S. Herbert

School of Geosciences Faculty and Staff Publications

No abstract provided.

Earth Scientists And Public Policy: Have We Failed New Orleans?, Timothy H. Dixon, Roy K. Dokka

School of Geosciences Faculty and Staff Publications

Earth scientists rarely influence public policy or urban planning. In defiance of geologic reality, cities are established on or expanded into floodplains, wetlands, earthquake faults, and active volcanoes. One exception to our lack of influence is that shortly after a major natural disaster, there is a brief window of heightened public awareness that may lead to sensible regulation or relocation of infrastructure. After the 1933 Long Beach earthquake, for example, California building codes were improved to reduce earthquake hazard. After Mississippi River flooding in 1993, several U.S. cities designated parts of their low-lying flood-plain as green space.

Final Report: Nevada System Of Higher Education Quality Assurance Program, Nevada System Of Higher Education

Publications (YM)

The principal purpose of the cooperative agreement was to develop and continue providing the public and the Office of Repository Development (ORD) of the U.S. Department of Energy’s (DOE) Office of Civilian Radioactive Waste Management (OCRWM) with an independently derived, unbiased body of scientific and engineering data concerning the study of Yucca Mountain as a potential high-level radioactive waste repository. Under this agreement, the Nevada System of Higher Education (NSHE), formerly the University and Community CollegeSystem of Nevada (UCCSN), performed scientific and engineering research, and maintained and fostered collaborative working relationships between government and academic researchers. In performing these activities, …

Land Use Influences The Spatiotemporal Controls On Nitrification And Denitrification In Headwater Streams, Clay P. Arango, J. L. Tank

All Faculty Scholarship for the College of the Sciences

N and C cycles in headwater streams are coupled, and land use can modify these cycles by increasing N availability and removing riparian vegetation. To increase our understanding of how land use modifies the controls on N cycling, we quantified rates of 2 microbial N transformations in a total of 18 agricultural and urban streams (with and without riparian buffers) for 3 y to examine how riparian vegetation and land use influence sediment nitrification and denitrification. Nitrification rates were highest in agricultural streams in late spring. Nitrification was not related to streamwater NH₄⁺ concentrations but was positively related …

Economics Of Soil Conservation Adoption In High-Rainfall Areas Of The Ethiopian Highlands, Menale Kassie, Stein Holden, Gunnar Köhlin, Randall Bluffstone

Economics Faculty Publications and Presentations

This study measures the impact of fanya juu bunds (an important soil and water conservation technology and the most popular type of contour bund in east Africa) on the value of crop production in a high-rainfall area in the Ethiopian highlands using cross-sectional multiple plot observations. We applied switching regression, stochastic dominance analysis (SDA), and decomposition and propensity score matching methods to ensure robustness. The switching regression, SDA, and decomposition analyses relied on matched observations, which was important because regression and SDA often do not ensure that comparable plots with conservation technology (conserved) and plots without (unconserved) actually exist in …

Alfalfa: Forage Crop Of The Future, Neal P. Martin, David Mertens, Ronald Hatfield, Hans Jung

Kentucky Alfalfa and Stored Forage Conference

In 2007, U.S. farmers harvested 23.6 million acres of alfalfa. Alfalfa harvested as hay and haylage produced 82.8 million tons valued at approximately $9.4 billion, ranking behind only corn and soybeans. Alfalfa hay supports dairy, beef, sheep, and horse production in the U.S. as well as a growing export market.

On The Cretaceous Occurrences Of Ammogloborotalia Zheng, 2001 (Foraminifera), Michael A. Kaminski, Claudia Cetean, Andrew Henderson, Sorin Filipescu

Studia UBB Geologia

Three species of agglutinated foraminifera from Cretaceous deep-water deposits that have been described as trochamminids are here transferred to the genus Ammogloborotalia ZHENG, 2001. These species are Trochammina abrupta GEROCH, 1959; Trochammina quinqueloba GEROCH, 1959, and Ammoanita globorotaliaeformis Gradstein and Kaminski, 1999. A fourth species, Ammogloborotalia sp.1, which is probably a new species from the Turonian of the southern East Carpathians of Romania is reported here for the first time. We hereby extend the known stratigraphic range of the genus Ammogloborotalia to the Late Jurassic (Tithonian).

Improving Predicted Distribution Models For Riverine Species: An Example From Nebraska, Scott P. Sowa, Gust Annis, Michael E. Morey, A. Garringer

United States Geological Survey: Publications

Modeling species distributions is in most instances, we believe, better if perceived as an exercise in modeling spatial patterns in habitat conditions. This perspective forces the modeler to think about factors and processes that influence local habitat and also to account for as many of these factors as possible in the modeling process. Local habitat conditions in riverine ecosystems (for example, pH, temperature, turbidity, permanence of flow, depths, velocities, substrate, cover, primary production, etc.) are influenced by a wide array of factors and processes operating at multiple spatial and temporal scales (Matthews 1998; Fausch et al. 2002). However, of primary …

Nebraska Gap Analysis Project, G. M. Henebry, M. R. Vaitkus, James W. Merchant

United States Geological Survey: Publications

The Nebraska Gap Analysis Project (NE-GAP) began in 1996 to assess the distribution and conservation status of biodiversity in the State under existing land ownership and management regimes. Our objectives were to (1) map land cover linked to dominant vegetation types; (2) map predicted distribution of terrestrial vertebrates; (3) document the representation of natural vegetation communities and animal species in areas managed for the long-term maintenance of biodiversity; and (4) make all information available to resource managers and land stewards in a readily accessible format.

Postgraduate Conference Fund, Conference Reports: Complexity In Geomorphology: 38th Annual Binghamton Geomorphology Symposium, Duke University, North Carolina, Usa, 5-7 October 2007, Caroline M. Burberry

Department of Earth and Atmospheric Sciences: Faculty Publications

The British Society for Geomorphology Postgraduate Conference Fund, Conference Report on Complexity in Geomorphology: 38th Annual Binghamton Geomorphology Symposium, held at Duke University, North Carolina, USA, October 5-7, 2007.

Rethinking Early Earth Phosphorus Geochemistry, Matthew A. Pasek

School of Geosciences Faculty and Staff Publications

Phosphorus is a key biologic element, and a prebiotic pathway leading to its incorporation into biomolecules has been difficult to ascertain. Most potentially prebiotic phosphorylation reactions have relied on orthophosphate as the source of phosphorus. It is suggested here that the geochemistry of phosphorus on the early Earth was instead controlled by reduced oxidation state phosphorus compounds such as phosphite (HPO₃ ²⁻), which are more soluble and reactive than orthophosphates. This reduced oxidation state phosphorus originated from extraterrestrial material that fell during the heavy bombardment period or was produced during impacts, and persisted in the mildly reducing atmosphere. …

Oligocene Deep Water Export From The North Atlantic And The Development Of The Antarctic Circumpolar Current Examined With Neodymium Isotopes, Howie Scher, Ellen E. Martin

Faculty Publications

Neodymium (Nd) isotopes were measured on 181 samples of fossil fish teeth recovered from Oligocene toMiocene sections at Ocean Drilling Program Site 1090 (3700 m water depth) on Agulhas Ridge in the Atlanticsector of the Southern Ocean. A long-term decreasing trend toward less radiogenic Nd isotope compositionsdominates the record. This trend is interrupted by shifts toward more radiogenic compositions near the early/lateOligocene boundary and the Oligocene/Miocene boundary. Overall, eNd values at Agulhas Ridge are moreradiogenic than at other Atlantic locations, and are similar to those at Indian Ocean locations. The pattern ofvariability is remarkably similar to Nd isotope results from …

Temporal Variations In Physical And Chemical Features Of Cryoconite Holes On Canada Glacier, Mcmurdo Dry Valleys, Antarctica, Andrew G. Fountain, Thomas H. Nylen, Martyn Tranter, Elizabeth A. Bagshaw

Geography Faculty Publications and Presentations

Cryoconite holes in the McMurdo Dry Valleys are ice-lidded, thus isolating the pools of water from the atmosphere and from potential surface melt. Hourly measurements of ice and water temperature and water electrical conductivity (EC) were recorded to broadly characterize the physical and chemical changes on daily to seasonal timescales. Overall, subsurface ice/water temperatures were typically several degrees warmer than air temperatures, underscoring the importance of subsurface solar heating. At no time was surface melt observed and the holes melted from within. Detailed differences in the timing and magnitude of both temperature and EC variations during melt-out and freezeup existed …

Gender Imbalance In U.S. Geoscience Academia, Mary Anne Holmes, Suzanne O'Connell, Connie Frey, Lois Ongley

Department of Earth and Atmospheric Sciences: Faculty Publications

Geoscientists explain women’s under-representation in our field along three dominant themes: the structure of academia, historically low numbers of women, and women’s views and choices. Which factor they perceive as most important depends overwhelmingly on their gender.

A Watershed Analysis Of Pattee Pond: Implications For Water Quality And Land Use Management, Problems In Environmental Science Course (Biology 493), Colby College, Colby Environmental Assessment Team, Colby College

Colby College Watershed Study: Pattee Pond (2008, 1992)

The Colby Environmental Assessment Team (CEAT) investigated the impact of land use patterns on the water quality of Pattee Pond in Winslow, Maine, during the summer and fall of 2008. Physical, chemical, and biological characteristics of water quality were analyzed to evaluate the current health of the lake. Data collected were compared with previous studies conducted by the Maine Department of Environmental Protection (DEP) and CEAT to examine changes in water quality and land use over time. Trends in Pattee Pond water quality suggest an improvement since the 1970s. However, the lake is still experiencing algal blooms resulting from phosphorus …

From Debate To Design: Issues In Clean Energy And Climate Change Law And Policy, Leslie Parker, Jennifer Ronk, Rachel Maxwell, Bradford Gentry, Marijn Wilder, James Cameron

Yale School of the Environment Publications Series

A report on the work of the REIL Network 2007-2008

Ground-Based Thermography Of Fluvial Systems At Low And High Discharge Reveals Potential Complex Thermal Heterogeneity Driven By Flow Variation And Bioroughness, M. Bayani Cardenas, Judson W. Harvey, Aaron I. Packman, Durelle T. Scott

Department of Earth and Atmospheric Sciences: Faculty Publications

Temperature is a primary physical and biogeochemical variable in aquatic systems. Field-based measurement of temperature at discrete sampling points has revealed temperature variability in fluvial systems, but traditional techniques do not readily allow for synoptic sampling schemes that can address temperature-related questions with broad, yet detailed, coverage. We present results of thermal infrared imaging at different stream discharge (base flow and peak flood) conditions using a handheld IR camera. Remotely sensed temperatures compare well with those measured with a digital thermometer. The thermal images show that periphyton, wood, and sandbars induce significant thermal heterogeneity during low stages. Moreover, the images …

Sustainability In A Time Of Climate Change: Developing An Intensive Research Framework For The Platte River Basin And The High Plains Proceedings From The 2008 Climate Change Workshop, Monica Norby, Ashley Washburn

Office of Research and Economic Development: Publications

Proceedings from the 2008 Climate change Workshop, Nebraska Sandhills, May 19-22, 2008. Hosted by the University of Nebraska–Lincoln and the U.S. Geological Survey

Comparative Osteohistology Of Hyperelongate Neural Spines In Basal Synapsids (Vertebrata, Amniota): Growth And Mechanical Considerations, Adam Keith Huttenlocker

Theses Digitization Project

Basal synapsids comprise one of the best represented groups of early tetrapods and demonstrate a classic example of a macroevolutionary transition. The basal synapsid fossil record is of significant interest to paleontolists because it presents an excellent opportunity for studying the evolution of vertebrate morphology. In the present study, neural spine osteohistology is further examined across a broad range of basal synapsid genera with hyperlongate neural spines. Due to the limited availability of specimens and the comparative approach required for destructive analysis, the present study is divided into two major comparative investigations: analysis of hyperlongate neural spine in (1) Spenacodontidae …

The Dynamic Evolutionary History Of The Bananaquit (Coereba Flaveola) In The Caribbean Revealed By A Multigene Analysis, Eva Bellemain, Eldredge Bermingham, Robert Ricklefs

Biology Department Faculty Works

BackgroundThe bananaquit (Coereba flaveola) is a small nectivorous and frugivorous emberizine bird (order Passeriformes) that is an abundant resident throughout the Caribbean region. We used multi-gene analyses to investigate the evolutionary history of this species throughout its distribution in the West Indies and in South and Middle America. We sequenced six mitochondrial genes (3744 base pairs) and three nuclear genes (2049 base pairs) for forty-four bananaquits and three outgroup species. We infer the ancestral area of the present-day bananaquit populations, report on the species' phylogenetic, biogeographic and evolutionary history, and propose scenarios for its diversification and range expansion.ResultsPhylogenetic concordance between …

Sampling Of Malodorous Compounds In Air Using Stir Bar Sorbtive Extraction, John H. Loughrin, Nanh Lovanh, Arturo I. Quintanar, Rezaul Mahmood

High Plains Regional Climate Center: Staff Publications

Twisters, (poly)‐dimethylsiloxane‐coated magnetic stir bars, were used to measure compounds typical of swine manure malodor in air. In initial experiments, a time to achieve equilibrium was determined by preloading the stir bars with ten compounds with a range of volatilities and polarities and then monitoring their loss. The rate of loss was dependent on compound volatility, and the time for equilibrium to be attained varied widely, from 22 min for phenol to 210 min for skatole. To test whether the Twisters would respond linearly over a range of concentrations, the stir bars were placed in vented jars with solutions of …

Characterization Of Natural Spring Waters Of The San Bernardino Mountains Using Stable Isotopes Of Oxygen And Hydrogen, Alison Renee Sloat

Theses Digitization Project

The purpose of this study was to characterize the natural spring waters of the San Bernardino Mountains using two stable isotopes. The isotopic results of this study will aid with tracing sources, movements, and mixing effects on groundwater receiving mountain-front recharge in the region.

Range-Wide Patterns Of Greater Sage-Grouse Persistence, Cameron L. Aldridge, Scott E. Nielsen, Hawthorne L. Beyer, Mark S. Boyce, John W. Connelly, Steven T. Knick, Michael A. Schroeder

United States Geological Survey: Staff Publications

Aim
Greater sage-grouse (Centrocercus urophasianus), a shrub-steppe obligate species of western North America, currently occupies only half its historical range. Here we examine how broad-scale, long-term trends in landscape condition have affected range contraction.

Location
Sagebrush biome of the western USA.

Methods
Logistic regression was used to assess persistence and extirpation of greater sage-grouse range based on landscape conditions measured by human population (density and population change), vegetation (percentage of sagebrush habitat), roads (density of and distance to roads), agriculture (cropland, farmland and cattle density), climate (number of severe and extreme droughts) and range periphery. Model predictions were …

Distribution And Environmental Limitations Of An Amphibian Pathogen In The Rocky Mountains, Usa, Erin Muths, David S. Pilliod, Lauren J. Livo

United States Geological Survey: Staff Publications

Amphibian populations continue to be imperiled by the chytrid fungus (Batrachochytrium dendrobatidis). Understanding where B. dendrobatidis (Bd) occurs and how it may be limited by environmental factors is critical to our ability to effectively conserve the amphibians affected by Bd. We sampled 1247 amphibians (boreal toads and surrogates) at 261 boreal toad (Bufo boreas) breeding sites (97 clusters) along an 11° latitudinal gradient in the Rocky Mountains to determine the distribution of B. dendrobatidis and examine environmental factors, such as temperature and elevation, that might affect its distribution. The fungus was detected at …

Corrigendum To ‘‘Distribution And Environmental Limitations Of An Amphibian Pathogen In The Rocky Mountains, Usa’’ [Biological Conservation 141 (2008) 1484–1492], Erin Muths, David S. Pilliod, Lauren J. Livo

United States Geological Survey: Staff Publications

The author regrets that in the above published paper the following error occurred:
In our recently published paper, ‘‘Distribution and environmental limitations of an amphibian pathogen in the Rocky Mountains, USA’’, we erroneously included the paper by J. Bosch et al. (2006), ‘‘Climate change and outbreaks of amphibian chytridiomycosis in a montane area of Central Spain: is there a link?’’ in a list of studies from the tropics. Clearly Dr. Bosch and colleagues worked in the temperate zone at a latitude very similar to that in our study suggesting that further investigation of additional similarities between the two sites might …

Pesticide Fate And Transport Throughout Unsaturated Zones In Five Agricultural Settings, Usa, Tracy C. Hancock, Mark W. Sandstrom, Jason R. Vogel, Richard M.T. Webb, E. Randall Bayless, Jack E. Barbash

United States Geological Survey: Staff Publications

Pesticide transport through the unsaturated zone is a function of chemical and soil characteristics, application, and water recharge rate. The fate and transport of 82 pesticides and degradates were investigated at five different agricultural sites. Atrazine and metolachlor, as well as several of the degradates of atrazine, metolachlor, acetochlor, and alachlor, were frequently detected in soil water during the 2004 growing season, and degradates were generally more abundant than parent compounds. Metolachlor and atrazine were applied at a Nebraska site the same year as sampling, and focused recharge coupled with the short time since application resulted in their movement in …