Digital Commons Network^™

Text-To-Text Generative Approach For Enhanced Complex Word Identification, Patrycja Śliwiak, Syed Afaq Ali Shah

Research outputs 2022 to 2026

This paper presents a novel approach for solving the Complex Word Identification (CWI) task using the text-to-text generative model. The CWI task involves identifying complex words in text, which is a challenging Natural Language Processing task. To our knowledge, it is a first attempt to address CWI problem into text-to-text context. In this work, we propose a new methodology that leverages the power of the Transformer model to evaluate complexity of words in binary and probabilistic settings. We also propose a novel CWI dataset, which consists of 62,200 phrases, both complex and simple. We train and fine-tune our proposed model …

Agfi-Gan: An Attention-Guided And Feature-Integrated Watermarking Model Based On Generative Adversarial Network Framework For Secure And Auditable Medical Imaging Application, Xinyun Liu, Ronghua Xu, Chen Zhao

Michigan Tech Publications

With the rapid digitization of healthcare, the secure transmission of medical images has become a critical concern, especially given the increasing prevalence of cyber threats and data privacy breaches. Medical images are frequently transmitted via the Internet and cloud platforms, making them susceptible to unauthorized access, tampering, and theft. While traditional cryptographic techniques play a vital role, they are often insufficient to fully ensure the integrity and confidentiality of these sensitive images. In this paper, we present AGFI-GAN, a robust and secure framework for medical image watermarking that leverages attention-guided and Feature-Integrated mechanisms within a Generative Adversarial Network (GAN). Specifically, …

Explainable Artifacts For Synthetic Western Blot Source Attribution, João Phillipe Cardenuto, Sara Mandelli, Daniel Moreira, Paolo Bestagini, Edward J. Delp, Anderson Rocha

Computer Science: Faculty Publications and Other Works

Recent advancements in artificial intelligence have enabled generative models to produce synthetic scientific images that are indistinguishable from pristine ones, posing a challenge even for expert scientists habituated to working with such content. When exploited by organizations known as paper mills, which systematically generate fraudulent articles, these technologies can significantly contribute to the spread of misinformation about ungrounded science, potentially undermining trust in scientific research. While previous studies have explored black-box solutions, such as Convolutional Neural Networks, for identifying synthetic content, only some have addressed the challenge of generalizing across different models and providing insight into the artifacts in synthetic …

Localization Of Synthetic Manipulations In Western Blot Images, Anmol Manjunath, Viola Negroni, Sara Mandelli, Daniel Moreira, Paolo Bestagini

Computer Science: Faculty Publications and Other Works

Recent breakthroughs in deep learning and generative systems have significantly fostered the creation of synthetic media, as well as the local alteration of real content via the insertion of highly realistic synthetic manipulations. Local image manipulation, in particular, poses serious challenges to the integrity of digital content and societal trust. This problem is not only confined to multimedia data, but also extends to biological images included in scientific publications, like images depicting Western blots. In this work, we address the task of localizing synthetic manipulations in Western blot images. To discriminate between pristine and synthetic pixels of an analyzed image, …

Digital Twin And Cybersecurity In Additive Manufacturing, Lidong Wang

Journal of Cybersecurity Education, Research and Practice

Additive manufacturing (AM) has been applied to automotive, aerospace, medical sectors, etc., but there are still challenges such as parts’ porosity, cracks, surface roughness, intrinsic anisotropy, and residual stress because of the high level of thermal gradient. It is significant to conduct the modeling and simulation of the AM process and achieve quality products. Digital Twin (DT) can help AM with forecasting defects/errors through simulation and real-time process monitoring. DT is a concept of Industry 4.0, and its digital structure reflects the real-time behaviors of a cyber-physical or physical system. This paper introduces the progress of DT applications in AM, …

Editorial: Artificial Intelligence For Smart Health: Learning, Simulation, And Optimization, Bing Yao, Nathan Gaw, Hyo Kyung Lee

Faculty Publications

With rapid developments in medical sensing and imaging, we now live in an era of data explosion in which large amounts of data are readily available in clinical environments. The fast-growing biomedical and healthcare data provide unprecedented opportunities for data-driven scientific knowledge discovery and clinical decision support. Our Research Topic aims to catalyze synergies among biomedical informatics, machine learning, computer simulation, operations research, systems engineering, and other related fields with three specific goals: (1) develop cutting-edge data-driven models to accelerate scientific knowledge discovery in biomedicine using healthcare data collected from laboratory systems, imaging systems, and medical and sensing devices; (2) …

Coding For Decentralized Systems And Forensic 3d Fingerprinting, Canran Wang

McKelvey School of Engineering Graduate Student Theses & Dissertations

This dissertation presents novel coding techniques that optimize communication costs and address security challenges in decentralized systems and 3D printing technologies. The first part focuses on encoding data in distributed systems in a decentralized manner, i.e., without a central processor which orchestrates the operation. In such systems, processors require coded data generated from inputs provided by source processors. An example is a distributed storage system with geographically dispersed nodes storing a large database collected by specific source processors. To reduce communication costs, we propose a universal solution applicable to any linear code, with optimizations for systematic Reed-Solomon and Lagrange codes, …

Measurement Of Breast Artery Calcification Using An Artificial Intelligence Detection Model And Its Association With Major Adverse Cardiovascular Events, Suzanne Rose, Josette Hartnett, Zachary Estep, Daniyal Ameen, Shweta Karki, Edward Schuster, Rebecca Newman, David Hsi

Department of Medicine Faculty Papers

Breast artery calcification (BAC) obtained from standard mammographic images is currently under evaluation to stratify risk of major adverse cardiovascular events in women. Measuring BAC using artificial intelligence (AI) technology, we aimed to determine the relationship between BAC and coronary artery calcification (CAC) severity with Major Adverse Cardiac Events (MACE). This retrospective study included women who underwent chest computed tomography (CT) within one year of mammography. T-test assessed the associations between MACE and variables of interest (BAC versus MACE, CAC versus MACE). Risk differences were calculated to capture the difference in observed risk and reference groups. Chi-square tests and/or Fisher's …

Transparency And Authority Concerns With Using Ai To Make Ethical Recommendations In Clinical Settings, Jeffrey Byrnes, Michael Robinson

Philosophy Faculty Articles and Research

In response to recent proposals to utilize artificial intelligence (AI) to automate ethics consultations in healthcare, we raise two main problems for the prospect of having healthcare professionals rely on AI-driven programs to provide ethical guidance in clinical matters. The first cause for concern is that, because these programs would effectively function like black boxes, this approach seems to preclude the kind of transparency that would allow clinical staff to explain and justify treatment decisions to patients, fellow caregivers, and those tasked with providing oversight. The other main problem is that the kind of authority that would need to be …

Ethical Aspects Of Utilising Artificial Intelligence In Clinical Settings, Jeffrey Byrnes, Michael Robinson

Philosophy Faculty Articles and Research

In response to recent proposals to utilize artificial intelligence (AI) to automate ethics consultations in healthcare, we raise two main problems for the prospect of having healthcare professionals rely on AI-driven programs to provide ethical guidance in clinical matters. The first cause for concern is that, because these programs would effectively function like black boxes, this approach seems to preclude the kind of transparency that would allow clinical staff to explain and justify treatment decisions to patients, fellow caregivers, and those tasked with providing oversight. The other main problem is that the kind of authority that would need to be …

Measuring And Improving Api Usability And Quality: A Comprehensive Framework And Empirical Study, Sultan Alanazy

Computer Science and Engineering Theses and Dissertations

Cloud computing provides on-demand access to flexible computing resources, enabling rapid application deployment without substantial infrastructure investment. Application Programming Interfaces (APIs) play an important role in ensuring the success of cloud applications. The primary users of APIs are the extensive community of application programmers who search, read, and understand APIs before integrating them into their applications or systems. In addition, developers often turn to online API support when seeking help. Problems in such support can result in incorrect API usage and integration problems. There is an urgent need to measure API usability and support issues to identify, characterize, and assess …

Breast Cancer Area Identification In Mammograms Using Expectation Maximization Gaussian Mixture Model, Rizki Khoirun Nisa, Dian Kurniasari, Favorisen R. Lumbanraja, Warsono Warsono

Karbala International Journal of Modern Science

Breast cancer accounts for 25% of all cancer diagnoses and 16% of cancer-related deaths among women globally, with high mortality rates due to late diagnosis. Early detection relies on imaging techniques such as mammography, histopathology, and breast ultrasound, with mammography being the gold standard due to its proven to detect breast cancer, thus it is effective for breast cancer treatment. However, mammogram images often produce noise and artefacts, complicating early-stage cancer detection and emphasizing the need for advanced image processing. Clustering algorithms such as K-means and Expectation Maximization - Gaussian Mixture Model (EM-GMM) have shown potential in image segmentation. This …

A Fast Federated Learning-Based Crypto-Aggregation Scheme And Its Simulation Analysis, Boshen Lü, Xiao Song

Journal of System Simulation

Abstract: To solve the problem of increased computation and communication costs caused by using homomorphic encryption (HE) to protect all gradients in traditional cryptographic aggregation (cryptoaggregation) schemes, a fast crypto-aggregation scheme called RandomCrypt was proposed. RandomCrypt performed clipping and quantization to fix the range of gradient values and then added two types of noise on the gradient for encryption and differential privacy (DP) protection. It conducted HE on noise keys to revise the precision loss caused by DP protection. RandomCrypt was implemented based on a FATE framework, and a hacking simulation experiment was conducted. The results show that the proposed …

Optimization Of Urban Agglomeration Transportation Network Evacuation Paths, Bowei He, Chengbing Li, Shida Nie, Jialin Wang

Journal of System Simulation

Abstract: Given the complexity of the internal transportation network structure within urban agglomerations and the presence of numerous alternative routes, this paper proposes an enhanced ant colony algorithm to address the evacuation path problem of urban agglomeration transportation networks. A comprehensive urban agglomeration transportation network model is constructed, in which the issue of virtual transfer edges within the urban scope is considered and a weighting function is constructed taking into account the travelling time cost and the transferring time cost. Optimizations are applied to the ant colony algorithm, constructing an adaptive adjustment of state transitions and an information pheromone update …

Five Key Issues And Governance Strategies In Integration Of China’S National Computing Power, Tao Hong, Le Cheng

Bulletin of Chinese Academy of Sciences (Chinese Version)

Computing power, as a core element of artificial intelligence, has not received sufficient research and attention compared to data and algorithms, and has become the short board of China in international artificial intelligence competition. In fact, the integrated construction of the arithmetic system is not only an inherent requirement for the development of the digital industry, but also a regular guide for the growth of the digital economy, and a core driver for the transformation of the digital society. Although it has always secured endorsement by national policy, the relevant legal norms and actual layout are still insufficient, and the …

Enhancing Graph Neural Networks By Editing Graphs, Jiayu Li

Dissertations - ALL

Graphs are pervasive in both the natural world and various domains of science and engineering. Numerous advanced classifiers, such as Graph Neural Networks (GNNs), have been developed to perform node classification on these graphs. However, as graphs become denser with an increasing number of edges, GNNs often suffer from suboptimal generalization performance due to the presence of task-irrelevant connections. These redundant connections can introduce noise, consume excessive computational resources, and degrade performance. Identifying and preserving critical connections in large-scale graphs, while pruning unnecessary ones, is crucial for enhancing the efficiency and accuracy of GNNs in node classification, particularly for GCNs. …

A Confidence-Based Knowledge Integration Framework For Cross-Domain Table Question Answering, Yuankai Fan, Tonghui Ren, Can Huang, Beini Zheng, Yinan Jing, Zhenying He, Jinbao Li, Jianxin Li

Research outputs 2022 to 2026

Recent advancements in TableQA leverage sequence-to-sequence (Seq2seq) deep learning models to accurately respond to natural language queries. These models achieve this by converting the queries into SQL queries, using information drawn from one or more tables. However, Seq2seq models often produce uncertain (low-confidence) predictions when distributing probability mass across multiple outputs during a decoding step, frequently yielding translation errors. To tackle this problem, we present CKIF, a confidence-based knowledge integration framework that uses a two-stage deep-learning-based ranking technique to mitigate the low-confidence problem commonly associated with Seq2seq models for TableQA. The core idea of CKIF is to introduce a flexible …

Noise-Enhanced Network Science, Reyhaneh Abdolazimi

Dissertations - ALL

Graphs are a versatile and powerful data structure used to model complex relationships in diverse domains such as social networks, biological systems, and transportation networks. In graphs, entities are represented by nodes, and interactions or relationships between them are represented by edges. For example, in the World Wide Web, web pages are considered vertices, and if there is a link from one page to another page on the web, there will be a directed edge between those pages in its graph data structure. These structures allow us to analyze and solve important problems like community detection (identifying closely related clusters …

A Clustering-Based Location Allocation Method For Delivery Sites Under Epidemic Situations, Yaqiong Zhou, Junqi Chen, Weishi Li, Sihang Qiu, Rusheng Ju

Journal of System Simulation

Abstract: To address the poor performance of commonly used intelligent optimization algorithms in solving location problems—specifically regarding effectiveness, efficiency, and stability—this study proposes a novel location allocation method for the delivery sites to deliver daily necessities during epidemic quarantines. After establishing the optimization objectives and constraints, we developed a relevant mathematical model based on the collected data and utilized traditional intelligent optimization algorithms to obtain Pareto optimal solutions. Building on the characteristics of these Pareto front solutions, we introduced an improved clustering algorithm and conducted simulation experiments using data from Changchun City. The results demonstrate that the proposed algorithm outperforms …

Simulation Of Cascade Failure In Urban Rail Transit Hypernetworks Based On Hypergraph Theory, Zijin Han, Mingjun Qian, Xixian Wang, Kaiyue Zhang

Journal of System Simulation

Abstract: In order to enhance the resilience of urban rail transit networks to ensure stable operations and passenger safety in the face of emergencies, hypergraph theory is introduced to construct a hypergraph based urban rail transit hypernetwork model, and a nonlinear load-capacity cascading failure model based on passenger flow weighting is established. In response to the passenger evacuation process at actual transportation network stations, a load redistribution mechanism is proposed, taking into consideration both the network level and the importance of passenger flow. To address scenarios where stations in actual traffic networks can still accommodate loads during shutdowns, a node …

Multimodal Representation Learning Frameworks For Modeling Progression And Heterogeneity In Alzheimer’S Disease, Sayantan Kumar

McKelvey School of Engineering Graduate Student Theses & Dissertations

Alzheimer’s Disease (AD) is the leading cause of dementia, characterised by cognitive and functional impairments that disrupt daily activities. Different clinical modalities such as neuroimaging biomarkers, cognitive assessments, fluid biomarkers and genetic data provide unique and complementary information, contributing to a more comprehensive understanding of disease progression and heterogeneity in disease characteristics. With recent advancements in computational capabilities, particularly in deep learning, multimodal representation learning frameworks aim to integrate diverse clinical modalities into a cohesive framework, capturing the most significant patterns within each modality. Existing data-driven multimodal representation learning frameworks in AD research have two major limitations. First, AD progresses …

Reimagining The Machine Vision Pipeline In Cyber Physical Systems For Trustworthiness And Efficiency, Adith Boloor

McKelvey School of Engineering Graduate Student Theses & Dissertations

Cyber-physical systems (CPS), including autonomous vehicles, drones, and mobile robots, rely on intricate sensors, actuators, and machine learning algorithms to perceive the physical world and execute actions within their surroundings. In the context of vision-driven CPS, achieving this demands processing a substantial volume of visual data captured by on-board cameras. The data is subsequently channeled through digital processors and harnessed by deep neural networks for tasks such as image classification, object detection, and depth perception. This data-centric, machine-vision-infused CPS fosters intelligent decision-making, thereby enhancing overall system performance. Trustworthiness, encompassing the robustness of the entire machine-vision pipeline, and system-level efficiency are …

Multimodal Representation Learning Frameworks For Modeling Progression And Heterogeneity In Alzheimer’S Disease, Sayantan Kumar

McKelvey School of Engineering Graduate Student Theses & Dissertations

Alzheimer’s Disease (AD) is the leading cause of dementia, characterised by cognitive and functional impairments that disrupt daily activities. Different clinical modalities such as neuroimaging biomarkers, cognitive assessments, fluid biomarkers and genetic data provide unique and complementary information, contributing to a more comprehensive understanding of disease progression and heterogeneity in disease characteristics. With recent advancements in computational capabilities, particularly in deep learning, multimodal representation learning frameworks aim to integrate diverse clinical modalities into a cohesive framework, capturing the most significant patterns within each modality. Existing data-driven multimodal representation learning frameworks in AD research have two major limitations. First, AD progresses …

Reimagining The Machine Vision Pipeline In Cyber Physical Systems For Trustworthiness And Efficiency, Adith Boloor

McKelvey School of Engineering Graduate Student Theses & Dissertations

Cyber-physical systems (CPS), including autonomous vehicles, drones, and mobile robots, rely on intricate sensors, actuators, and machine learning algorithms to perceive the physical world and execute actions within their surroundings. In the context of vision-driven CPS, achieving this demands processing a substantial volume of visual data captured by on-board cameras. The data is subsequently channeled through digital processors and harnessed by deep neural networks for tasks such as image classification, object detection, and depth perception. This data-centric, machine-vision-infused CPS fosters intelligent decision-making, thereby enhancing overall system performance. Trustworthiness, encompassing the robustness of the entire machine-vision pipeline, and system-level efficiency are …

Architecture And Key Technologies Of New Research Informatization Infrastructure Platform Under The Fifth Research Paradigm, Fangyu Liao, Yang Wang, Rongqiang Cao, Bo Zhang, Zhenyu Li, Huajin Wang, Xin Chen, Dong Li, Yangang Wang, Xin Wei

Bulletin of Chinese Academy of Sciences (Chinese Version)

The basic platform of research informatization is an indispensable pedestal for modern scientific research and an important manifestation of national scientific and technological innovation capability. As the research paradigm continues to evolve, the architecture and technologies of research informatization infrastructure platform are bound to evolve as well. The new research paradigm brings unique demands and challenges to the algorithmic computility, network transmission capacity, and data storage and management. Consequently, it is an urgent requirement for research informatization infrastructure platform to make technological breakthroughs in the areas of intelligent computility, large-scale data storage and high throughput read/write, cross-network software and hardware …

Gpr-187 Deep Learning Models For Protein-Protein Binding Affinity Prediction, Lingtao Chen

C-Day Computing Showcase

Binding affinity (BA) prediction is important for drug discovery and protein engineering. It seeks to understand the interaction strength between proteins and their ligands (or proteins). This information assists in the design of proteins with enhanced or novel functions, as well as understanding the molecular mechanisms of drug action. This paper presents the development and comparative analysis of two deep learning models, a convolutional neural network (CNN) and a transformer model. Many variants of models in this research were developed using TensorFlow. One model that utilizes ProteinBERT was developed using PyTorch. The CNN model captures local sequence features effectively, while …

Tubarr: A Self-Hosted Video Archiver, Joshua Sheputa

Honors Program Theses and Projects

Over the past few years, I’ve been slowly expanding my homelab, a personal setup for me to experiment with software, hardware, and deployment configurations. One driving force behind this is my desire to digitize and save anything that is important to me or that I want easy access to. I started with my family’s old CD collection, then moved on to any Blu-rays movie discs we had. Eventually, I started thinking about what else I care about and don’t want to lose track of. This brought me to the thought that any YouTube video that I may want to revisit …

Integrating Criminological Theories In Cybersecurity Risk Assessment: A Study Of The Traci Framework's Application To Critical Infrastructure, Connor S. Martin

Doctoral Dissertations and Projects

This dissertation explores the application of the Taxonomy for Risk Assessment of Cyberattacks on Critical Infrastructure (TRACI) framework, a tool designed to systematically evaluate cybersecurity threats against critical infrastructure. TRACI integrates principles from Routine Activity and Rational Choice Theories to provide a detailed and comprehensive understanding of cybersecurity risks. This integration facilitates an in-depth analysis not only of how cyberattacks occur but also of the underlying reasons they are initiated, by categorizing and assessing risks based on factors such as attacker motivations and systemic vulnerabilities. By employing ANOVA to assess variations in risk assessment scores across TRACI's designated categories—Assets, Risk …

Feasibility Of Large Language Models For Ceus Li-Rads Categorization Of Small Liver Nodules In Patients At Risk For Hepatocellular Carcinoma, Jiayan Huang, Rui Yang, Xiaotong Huang, Keyu Zeng, Yan Liu, Jun Luo, Andrej Lyshchik, Qiang Lu

Department of Radiology Faculty Papers

BACKGROUND: Large language models (LLMs) offer opportunities to enhance radiological applications, but their performance in handling complex tasks remains insufficiently investigated.

PURPOSE: To evaluate the performance of LLMs integrated with Contrast-enhanced Ultrasound Liver Imaging Reporting and Data System (CEUS LI-RADS) in diagnosing small (≤20mm) hepatocellular carcinoma (sHCC) in high-risk patients.

MATERIALS AND METHODS: From November 2014 to December 2023, high-risk HCC patients with untreated small (≤20mm) focal liver lesions (sFLLs), were included in this retrospective study. ChatGPT-4.0, ChatGPT-4o, ChatGPT-4o mini, and Google Gemini were integrated with imaging features from structured CEUS LI-RADS reports to assess their diagnostic performance for sHCC. …

Schedulability Analysis Of Multi-Phase Limited-Preemption Tasks, Benjamin Standaert

McKelvey School of Engineering Graduate Student Theses & Dissertations

This work addresses hard real-time systems, in which tasks must be scheduled so that they are guaranteed to meet deadlines. In particular, when tasks execute across multiple domains with high preemption costs, the combined cost of these preemptions can cause the system to become unschedulable. The number of preemptions must therefore be bounded to limit the overall task execution time, while ensuring that task blocking times are small enough to allow the system to be schedulable. Prior work introduces the Multi-Phase Secure model, which describes a more exact version of this scenario, and an algorithm to determine schedulability of sporadic …