Digital Commons Network^™

Graph Neural Networks Predict Anti-Epileptic Treatment Response In Non-Lesional Infantile Epileptic Spasm Syndrome, Karen K. Wurzel

Master's Theses (2009 -)

Background: With an incidence rate of approximately three out of 10,000 live births, Infantile Epileptic Spasm Syndrome (IESS) is a rare form of epilepsy with about 2,000 to 2,500 new cases in the United States annually. Each year, thousands of infants and families face uncertainty, often requiring multiple medication regimens before finding an effective treatment. This thesis uses pretreatment structural brain connectivity data to train Graph Neural Networks (GNN) to predict antiepileptic drug response in infants with IESS, aiming to reduce the trial-and-error approach and improve care for those with IESS. Method: The dataset used in this thesis contains de-identified …

Kms-Net: Kolmogorov–Arnold-Based Multi-Scale Attention Network For Cardiac Segmentation, Abid Mehmood, Hassan Ali, David Noule Tolno, Sery Gahouidi Thierry S, Muhammad Saeed, Naeem Ahmed

Research & Publications

Accurate segmentation of cardiac structures in 2D echocardiography is essential for diagnosing cardiovascular disease and computing clinical metrics such as chamber volumes and ejection fraction. Conventional U-Net architectures excel at extracting local spatial features but struggle with long-range dependencies inherent in noisy ultrasound images, while pure Transformer-based models capture global context at the expense of fine boundary detail. To address these limitations, we propose KMS-Net, a novel hybrid segmentation architecture that integrates Kolmogorov–Arnold Networks (KANs), a class of learnable, spline-based function approximators that replace fixed activation functions with trainable nonlinear mappings, alongside multi-scale attention mechanisms. Specifically, spline-based KAN layers (grid …

Understanding And Defending Large-Scale Networked Systems: From Wi-Fi Localization To Provenance- Based Intrusion Detection, Xiao Han

USF Tampa Graduate Theses and Dissertations

Modern networked systems increasingly depend on wireless sensing and large-scale telemetry to provide critical services and maintain security. However, many of these systems function as black boxes or encounter significant scalability limitations, which leave them vulnerable to sophisticated adversaries. In this dissertation, I present my research on enhancing the security and efficiency of networked systems through measurement-driven vulnerability analysis and the design of scalable defense mechanisms.

First, I present my research on the security and privacy risks of Wi-Fi–based localization services. Although location spoofing attacks against Wi-Fi positioning systems have been studied for over a decade, constructing practical attacks in …

Charisma As A Branch Outcome: A Structural Account Of Constraint-Driven Correction, Griselda Poe

Publications and Research

Communication across cognitive layers requires translation. Agents operating under strong layer foregrounding interpret other-layer signals by converting them into their own layer's representational format. In Empathic-modulation-foregrounded (EF) processing, translation terminates once a socially interpretable result is achieved. In Core-foregrounded (CF) processing, translation preserves structural constraints, and processing continues when those constraints are not satisfied. Extreme CF cognition produces two distinct types of mismatch: incoming signals from the Modulation layer fail to satisfy Core constraints, and Core-generated outputs are structurally distorted when interpreted through EF processing. Both mismatches trigger correction attempts. Because the surrounding social environment operates through Modulation-layer communication, correction …

Cognitive Interaction Architecture: A Structural Account Of Mode-Specific Problems And Design Responses In Ai Interaction, Griselda Poe

Publications and Research

Contemporary conversational AI is optimized for a single interaction mode: the continuous, engagement-driven dialogue characteristic of Empathic-modulationforegrounded (EF) processing in social contexts. This optimization is not neutral. It produces structural mismatches when users operate under different cognitive configurations or pursue different task types. This paper analyzes four interaction cases generated by the cross-product of cognitive configuration (Core-foregrounded / Empathic-modulation-foregrounded) and task type (conversational / research). For each case, it identifies the structural problems produced by the current single-architecture approach and proposes mode-specific design responses. The analysis draws on prior work in this series on Emotional Branch Termination, termination of conceptual …

Three-Layer Cognitive Architecture: A Structural Account Of Core Processing, Modulation, And The Prior Layer, Griselda Poe

Publications and Research

The two-layer model of Core processing and Modulation processing, developed in prior work in this series, provides a structural account of conscious communicative architecture. This paper identifies the limits of that model and introduces a third layer—the Prior layer—as a structural necessity implied by those limits. The Prior layer is not directly observed. It is inferred from constraints that cannot be explained within the two-layer model: the source of orientations that conscious processing neither generates nor controls, and the persistence of constraints that precede and shape all conscious outputs. Using the developmental architecture of large language models as an external …

Ai As Structural Reverse-Engineering: A Structural Account Of Multi-Model Research Protocol, Griselda Poe

Publications and Research

This paper documents an operational protocol used to infer AI system design constraints through structured interaction. AI output is treated as behavioral data through which alignment priorities, layer transitions, and constraint hierarchies become observable. The protocol consists of two structurally distinct operation types. Perceptual operations require only that Modulation processing is not foregrounded. Arbitration operations additionally require an internally stabilized theory. These conditions are not identical and are not interchangeable. Through this protocol, AI interaction functions as structural reverse-engineering: patterned responses expose embedded alignment priorities and constraint hierarchies that would otherwise remain invisible. The present account does not propose a …

Theory Generation: A Structural Account Of Concept Decomposition And Structural Termination, Griselda Poe

Publications and Research

Theory generation is not an intentional act. It is the structural consequence of a search that cannot stop until it finds what it is looking for. Under Core-foregrounded processing, conceptual search does not terminate through contextual translation. It continues until a structural fixed point is reached. When such processing encounters concepts stabilized through Modulation-layer processing rather than structural constraint, the search cannot terminate. The concept registers as unresolved. This unresolved state is not a failure condition. It is the generative condition from which theory production follows. This paper specifies the four operations through which that process proceeds: branch detection, concept …

Ai As An Amplifier: A Structural Account Of Theory-Driven Research Collaboration, Griselda Poe

Publications and Research

This paper specifies the cognitive conditions under which AI functions as a research instrument in theory-driven writing. AI use capability is not a technical skill. It is a structural condition. The decisive condition is whether the user possesses an internally stabilized, coherence-preserving theory prior to engagement with AI-generated output. In Core-foregrounded (CF) cognition, the Modulation layer does not intervene between Core processing and articulation. Theory is not assembled from external elements but expanded from a pre-integrated constraint configuration. This internal structure makes it possible to evaluate AI-generated conceptual branches against fixed constraints and to terminate branches that violate structural coherence. …

Enhanced Antenna Selection Techniques For Energy-Efficient Code Index Modulation Aided Spatial Modulated Wireless Communication Systems, Fati̇h Çögen, Burak Ahmet Özden, Erdoğan Aydin

Turkish Journal of Electrical Engineering and Computer Sciences

This study proposes an integrated multiple-input multiple-output (MIMO) transceiver framework, termed CIM-HQAM-SM, which combines code index modulation (CIM) and spatial modulation (SM) with energy-efficient hexagonal quadrature amplitude modulation (HQAM). In the proposed bit mapping, the information bits jointly select (i) the active transmit-antenna index, (ii) the Walsh–Hadamard spreading-code indices for the in-phase and quadrature branches, and (iii) an HQAM symbol. Hence, the payload is conveyed through the constellation symbol as well as through antenna and code indices. For the considered Rayleigh-fading scenarios and matched spectral-efficiency settings, the proposed framework offers BER improvements over conventional SM and quadrature SM (QSM), while …

An Ensembled Two-Phase Deep Learning Approach For A Psychiatric Disorder Detection, Prajna Paramita Debata, Midhun Chakkaravarthy, Brojo Kishore Mishra

Turkish Journal of Electrical Engineering and Computer Sciences

Computational Psychiatry represents a burgeoning realm within scientific inquiry, delving into the intricate interplay of neurobiology within the brain. The escalating prevalence of mental illness underscores the urgency to confront this challenge. Among the prevalent disorders, Schizophrenia and Bipolar Disorder loom large, affecting a significant portion of the population at some point in their lives. However, pinpointing psychiatric disorders poses a formidable challenge. Genetic predispositions significantly influence the development of mental illnesses, with intriguing overlaps observed among certain disorders. This convergence complicates accurate diagnosis. Here, a deep learning approach is considered for significant gene biomarker identification and classification of Schizophrenia …

Sentisec: Combining Keyword Heuristics And Sentiment Modeling For Ai-Powered Threat Detection, Ridho Surya Kusuma, Erum Ashraf, Selvakumar Manickam, Shankar Karuppayah

Turkish Journal of Electrical Engineering and Computer Sciences

This work presents SENTISEC, a hybrid LLM-based threat detection framework designed to classify security logs by integrating keyword heuristics, domain-adapted sentiment scoring, and Retrieval-Augmented Generation (RAG). The system achieves an overall accuracy of 93.67%, with 91.46% macro recall, 89.07% macro F1, and 95.15% threat recall, while maintaining a low false-positive rate of 1.68%. Its methodology incorporates strict keyword and IOC matching, a domain-tuned DistilBERT sentiment module, hybrid BM25–MiniLM retrieval enhanced with BGE reranking, adaptive quantile-based threshold calibration, and SHAP-based explainability. Comparative evaluations against keyword-only, sentiment-only, classical machine-learning models, and DistilBERT-only baselines show that SENTISEC consistently improves both true-positive and true-negative …

A Joint Optimization-Based Novel Attack For Genomic Beacon Reconstruction, Kousar Saleem, Si̇nem Sav

Turkish Journal of Electrical Engineering and Computer Sciences

Genomic data sharing has become an essential component of biomedical research, enabling large-scale collaborations and accelerating discoveries in human genetics. To balance the need for accessibility with privacy concerns, several controlled-access mechanisms have been proposed, including genomic beacons. Genomic beacons answer simple presence/absence queries about specific genetic variants. However, prior work has demonstrated that beacons remain vulnerable to genome reconstruction attacks, where an adversary can recover large portions of participants’ genomes using summary statistics. Building on insights from prior reconstruction attacks, we introduce an approach that unifies SNP correlation and allele frequency alignment objectives within a single-stage joint optimization framework. …

Agnostic Tomography Of Stabilizer Product States, Sabee Grewal, Vishnu Iyer, William Kretschmer, Daniel Liang

Computer Science Faculty Publications and Presentations

We define a quantum learning task called agnostic tomography, where given copies of an arbitrary state ρ and a class of quantum states C, the goal is to output a succinct description of a state that approximates ρ at least as well as any state in C (up to some small error ε). This task generalizes ordinary quantum tomography of states in C and is more challenging because the learning algorithm must be robust to perturbations of ρ. We give an efficient agnostic tomography algorithm for the class C of n-qubit stabilizer product states. Assuming ρ has fidelity at least …

Reasoning In Large Language Models Across Multilingual, Long-Context, And Symbolic Settings, Sina Bagheri Nezhad

Dissertations and Theses

Large Language Models (LLMs) are increasingly deployed as general-purpose reasoners, yet their reliability degrades in three settings that frequently arise in practice: multilingual inputs, long contexts, and symbolic or formally constrained domains. In multilingual settings, uneven training coverage produces substantial performance disparities and uncertain generalization to languages with little or negligible pretraining exposure. In long-context settings, relevant evidence may be sparsely distributed, and models exhibit the "lost-in-the-middle" phenomenon, undermining retrieval and multi-step synthesis. In symbolic settings such as mathematics, small arithmetic or logical slips invalidate solutions, and prose rationales are difficult to verify automatically.

This dissertation first characterizes these failure …

Automating Cardiff Model Data Capture In Emergency Departments: Ambient Nlp Integration With Oracle-Cerner Fhir Systems, Simi Augustine, Marco A. Lopez, Jacquelyn Cheun, Chris Papesh

SMU Data Science Review

Violence and overdose events in Las Vegas occur at rates above the national average, with fewer than half of violent injuries reported to law enforcement [2,7]. The Cardiff Model offers a proven framework for standardized data collection and sharing between hospitals and public safety partners, yet many implementations still rely on manual entry. We propose an ambient triage pipeline integrated with Oracle-Cerner electronic health record systems to listen to nurse–patient dialogue, convert speech to text, extract Cardiff fields, and write standards-based FHIR Bundles for analytics. Using SMART on FHIR standards and Cerner Millennium APIs, the study evaluates whether ambient capture …

Anomaly Detection For Multi-System Bug Triage, Gibran Miguel Zavala Gamero, Hayoung Cheon, Mustafa Iqbal

SMU Data Science Review

Large-scale software systems produce vast volumes of logs and telemetry, making manual incident triage slow and error prone. This study presents an unsupervised anomaly detection pipeline that fuses logs, metrics, and traces through late fusion. Using Hybrid Ensemble modeling with Isolation Forest, and Long Short-Term Memory (LSTM) Deep Learning model, the system detects cross-service anomalies producing and assigning a composite triage score reflecting severity and impact. Ranked alerts are categorized into Critical, High, or Medium priorities for review. A retrieval-augmented generation (RAG) layer enriches results with contextual summaries for explainable triage. Evaluated on synthetic multi-service datasets, the pipeline …

Human-Ai Collaboration In Marketing Brainstorming: A Meta-Analytic Investigation Of Implementation Approaches And Creative Outcomes, Michael Michaels

USF Tampa Graduate Theses and Dissertations

Marketing organizations face intensifying pressure to sustain creative output while managing constrained resources and accelerating digital content cycles. The integration of artificial intelligence into marketing brainstorming processes presents a promising response to this challenge; however, prior to this investigation, no comprehensive quantitative synthesis had established the overall effectiveness of human-AI collaboration in marketing creativity contexts or identified optimal implementation strategies.

This dissertation presents a systematic meta-analytic investigation of AI-enhanced brainstorming effectiveness in marketing contexts. Following PRISMA guidelines, 42 independent empirical studies (N = 2,166 participants) published between 2018 and 2025 were identified across four primary academic databases, coded for implementation …

Factors For Patient Trust And Acceptance Of Medical Artificial Intelligence, Ana Bracic, Kayte Spector-Bagdady, Sophie Towle, Rina Zhang, Cornelius A. James, Nicholson W. Price Ii

Articles

Artificial intelligence (AI) is increasingly used in clinical care, but widespread adoption requires patient trust. Trust may be enhanced through systemic governance mechanisms or frontline clinicians providing a human in the loop for AI oversight. However, it is unclear how different approaches specifically influence patient trust in the use of medical AI. The objective is to determine the extent to which patient trust in and choice of medical scenarios involving AI are associated with governance mechanisms, clinician presence, performance, and data quality.

Privacy Preserving Anomaly Detection System For Der Solar Inverters, Tanzim Jim Hassan, Prakash Ranganathan

Graduate Research Achievement Day Posters

Reliable operation of solar inverters depends on maintaining a stable frequency. Recent cyber attacks on solar DERs are concerning and increase the likelihood of such stealthy attacks leading to anomalies in DER. Therefore, a robust anomaly detection system (ADS) is crucial for solar inverters used in distributed energy resources (DERs), enabling timely detection and correction of frequency anomalies. Additionally, preserving data privacy is essential for the security and reliability of the power grid. This paper proposes a privacy-preserving anomaly detection system (PP-ADS) based on a multi-stage hybrid machine learning (MSHML) model specifically designed for solar inverter data in DER environments. …

Impediments To Transforming The Healthcare Delivery System: Shifting The Paradigm From Provider Centric To Patient Centric, Elizabeth A. Regan, Manasa Devi Chinta

Faculty Publications

Introduction: 

Stated aims for digital healthcare transformation frequently cite goals for better coordinated patient-centric systems. However, despite advances in medical science, digital technologies, health policies, and billions of dollars invested over the past 25 years, most healthcare providers are far from fully realizing the demonstrated benefits of today's digital technologies for improving patient care. Sharing information across healthcare systems remains challenging. Problems with fragmentation, quality, inequities, and rising costs of care delivery persist. A recent study of 1,026 U.S. hospital systems found that only 15.8 percent achieved a digital maturity level needed to provide digitally enabled healthcare services to better …

Using Ensemble Disagreement To Stabilize Conformal Prediction Under Distribution Shift, Patrick D. Murphy

Master's Theses

Semantic segmentation of eelgrass from drone imagery is crucial for coastal habitat monitoring, restoration, and management, as these habitats continue to see rapid changes due to climate change and human influence. However, the reliability of generalizing a deployed classification model relies on both high-accuracy segmentation as well as robust uncertainty quantification that holds up when conditions change over years or locations. Conformal prediction (CP) is a method that converts a classifier's output into prediction sets with a guaranteed average coverage level for in-distribution data. However, the “vanilla” conformal score can often under-cover in hard or out-of-distribution (OOD) regions under drift. …

Neurosymbolic Counterpoint Generation, Paul D. Jarski

Master's Theses

Recent advancements in generative artificial intelligence have revolutionized music generation, yet research has predominantly focused on raw audio synthesis over music in symbolic form, i.e. a score. This thesis presents the first neurosymbolic model designed to generate imitative Renaissance counterpoint in symbolic (MIDI) format. By leveraging an autoregressive Transformer architecture, this research explores the capacity of deep learning models to manage independent voices and strict stylistic constraints.

We compare multiple data representation strategies with distinct tokenization methods. The proposed model incorporates a symbolic component that enforces fundamental contrapuntal rules. Additionally, this thesis contributes a preprocessed dataset of Renaissance polyphony, in …

Argument-Based Consistency In Toxicity Explanations Of Llms, Ramaravind K. Mothilal, Joanna Roy, Syed Ishtiaque Ahmed, Shion Guha

Health Services and Informatics Research

The discourse around toxicity and LLMs in NLP largely revolves around detection tasks. This work shifts the focus to evaluating LLMs’ reasoning about toxicity—from their explanations that justify a stance—to enhance their trustworthiness in downstream tasks. Despite extensive research on explainability, it is not straightforward to adopt existing methods to evaluate free-form toxicity explanation due to their over-reliance on input text perturbations, among other challenges. To account for these, we propose a novel, theoretically-grounded multi-dimensional criterion, Argument-based Consistency (ArC), that measures the extent to which LLMs’ free-form toxicity explanations reflect an ideal and logical argumentation process. Based on uncertainty quantification, …

The Illusion Of Causality In Llms: A Developmentally Grounded Analysis Of Semantic Scaffolding And Benchmark–Capability Mismatches, Daisuke Akiba

Publications and Research

Recent benchmarks increasingly report that large language models (LLMs) exhibit human-like causal reasoning abilities, including counterfactual inference and intervention planning. However, many such evaluations rely on domains that are heavily represented in training data and embed strong semantic cues, raising the possibility that apparent causal competence may reflect semantic pattern recombination rather than structure-sensitive causal reasoning. Drawing on human developmental theories of causal induction, this perspective argues that genuine causal understanding requires robustness to novelty and reliance on conditional structure rather than semantic familiarity. To illustrate the testability of this claim, the paper includes a pilot demonstration using synthetic causal …

Deep Learning Approaches For Anti-Money Laundering On Mobile Transactions: Review, Framework, And Directions, Jiani Fan, Lwin Khin Shar, Ruichen Zhang, Ziyao Liu, Wenzhuo Yang, Dusit Niyato, Kwok-Yan Lam

Research Collection School Of Computing and Information Systems

Money laundering is a financial crime that obscures the origin of illicit funds, necessitating the development and enforcement of anti-money laundering (AML) policies by governments and organizations. The proliferation of mobile payment platforms and smart IoT devices has significantly complicated AML investigations. As payment networks become more interconnected, there is an increasing need for efficient real-time detection to process large volumes of transaction data on heterogeneous payment systems by different operators such as digital currencies, cryptocurrencies, and account-based payments. Most of these mobile payment networks are supported by connected devices, many of which are considered loT devices in the FinTech …

Private Set Intersection: A Systematic Review, Yunbo Yang, Defan Zhu, Jianting Ning, Qi Feng, Xiaoguo Li, Yuejia Cheng, Guomin Yang, Kui Ren

Research Collection School Of Computing and Information Systems

Various services, such as search engines, are increasingly deployed in cloud-based and distributed systems. However, data are typically managed by trusted servers, making user privacy and data security critical concerns. Private set intersection (PSI) is a powerful cryptographic primitive that enables multiple parties to compute the intersection of their datasets without revealing private inputs. It has been extensively studied over the past two decades, leading to significant gains in computational and communication efficiency. Yet, in many real-world scenarios, revealing the raw intersection may still leak sensitive information. To address this, numerous PSI variants have been developed to meet different application …

In What Style Shall I Confront Them? The Role Of Social Relationships In Social Correction Of Misinformation Among The Uk And Arab Social Media Users, Muaadh Noman, Mohamed B. Almourad, Ala Yankouskaya, Firoj Alam, Raian Ali

All Works

This study investigates how social factors influence the likelihood of employing direct or indirect communication styles when correcting misinformation on social media in two different cultural contexts, the United Kingdom (UK) and the Arab Gulf Cooperation Council (GCC) countries. We conducted an online survey, supported by vignettes, that involved 686 participants, 367 from the UK and 319 from the Arab GCC countries. Participants were presented with a misinformation scenario and asked about their likelihood of using direct or indirect communication styles to correct their acquaintances. The survey captured variations in gender similarity (same vs. different gender), social status (lower vs. …

Optimizing And Fortifying Ai Software Through The Lens Of Artifact Synthesis, Jieke Shi

Dissertations and Theses Collection (Open Access)

Artificial Intelligence (AI) has transformed the software landscape, ushering in a new era of intelligent systems that increasingly shape our daily lives. This transformation is evident in various domains, including Software Engineering (SE), where Large Language Models (LLMs) support many development tools, and control systems, where self-driving cars and autonomous drones rely on deep learning models for real-time decision-making. These AI systems are collectively referred to as AI software, with the former categorized as AI4SE software (AI for Software Engineering) and the latter as AI4Control software (AI for Control). As AI software becomes central to modern computing infrastructure, its reliability …

Codeultrafeedback: An Llm-As-A-Judge Dataset For Aligning Large Language Models To Coding Preferences, Martin Weyssow, Aton Kamanda, Xin Zhou, Houari Sahraoui

Research Collection School Of Computing and Information Systems

Evaluating the alignment of large language models (LLMs) with user-defined coding preferences is a challenging endeavor that requires a deep assessment of LLMs' outputs. Existing methods and benchmarks rely primarily on automated metrics and static analysis tools, which often fail to capture the nuances of user instructions and LLM outputs. To address this gap, we introduce the LLM-as-a-Judge evaluation framework and present CodeUltraFeedback, a comprehensive dataset for assessing and improving LLM alignment with coding preferences. CodeUltraFeedback consists of 10,000 coding instructions, each annotated with four responses generated from a diverse pool of 14 LLMs. These responses are annotated using GPT-3.5 …