Digital Commons Network^™

Analyzing The Evolution Of Science: Topological Cycles And Community Detection In Knowledge Networks, Frances C. Mcconnell

Mathematics, Statistics, and Computer Science Honors Projects

How scientific knowledge grows and organizes itself is a central question in the study of science. This thesis uses tools from topology and network science to detect and characterize knowledge gaps—places in a field’s literature where related concepts do not co-occur. We develop a metric to quantify the degree of interdisciplinarity of each gap, using the community structure of the underlying network as a proxy for subfields. Across a wide range of fields, gaps reliably span multiple subfields and evolve in recognizable temporal patterns, highlighting new insights into how scientific fields are structured and their stage of development.

Securing Cloud-Native Systems: From Vulnerability Analysis To External And Insider Threat Detection, Jiongchi Yu

Dissertations and Theses Collection (Open Access)

Cloud-native systems have become the backbone of modern software infrastructure. However, their dynamic resource orchestration and complex configurability introduce a large attack surface and intricate security challenges. Adversaries can externally exploit vulnerabilities in cloud components or perform insider movement within cloud environments to launch attacks. As these systems increasingly support critical services, security breaches can lead to severe operational and economic consequences.

Despite extensive efforts in vulnerability detection and attack monitoring, existing approaches struggle to remain effective in cloud-native environments characterized by rapid evolution and inherent heterogeneity. In particular, they exhibit three fundamental limitations: (1) Insufficient understanding of defect patterns …

Durable, Distributed Llm Inference On Cots Devices, Brycen E. Dunn

Electronic Theses and Dissertations

The advancement of Large Language Models (LLMs) has fundamentally changed the nature of natural language processing. The substantial memory requirements of frontier models creates a significant barrier to entry, centralizing inference. This thesis presents the design and implementation of a distributed inference framework designed to democratize LLMs by leveraging commodity devices. The framework combines the resources of heterogeneous COTS devices into a unified compute pool, enabling the inference of models exceeding a single device's memory capacity. A novel Task Partitioning Engine (TPE) analyzes model architectures, profiles node capabilities, and supports pipeline and expert parallelism strategies. The primary contribution is a …

Using Siamese Neural Networks To Effectively Detect Trojans In Fpgas When Trojans Manipulate Encryption Operations At The Bitstream Level, Kylie Arnett

Graduate Theses and Dissertations (2019 - present)

This research investigates security vulnerabilities in Field-Programmable Gate Arrays (FPGAs) at the bitstream level, focusing on hardware trojans (HTs) that manipulate encryption operations. This study addresses two critical questions: (1) The feasibility of exploiting FPGA bitstreams to selectively bypass encryption operations when a predefined input pattern is observed (all ones), thereby exposing sensitive data, and (2) the efficacy of Siamese Neural Networks (SNNs) in detecting such trojans with high accuracy. FPGAs are vulnerable to malicious modifications during manufacturing or deployment, posing risks to data integrity and system functionality. In this work, a trojan is inserted into a Xilinx series-7 FPGA …

Developing A Framework For Microchip Design Recovery, Eric Diep

Graduate Theses and Dissertations (2019 - present)

Due to the increase in diverse chip production over the past decade, reverse engineering has become a difficult and daunting task. This research develops a methodology for microchip design recovery, seeking to validate and reproduce prior approaches to physical reverse engineering using low-cost tools and techniques. We used mechanical hardware abrasion tools and techniques to delayer and capture silicon integrated chip (IC) layout. We focused on the Mifare Classic EVl microchip, commonly implemented in public transit/transportation cards, to extract information for design recovery. The research explores limitations and advantages of mechanical abrasion and optical microscopy in context to modem chip …

Post-Vote Tampering In Nigerian Elections And The Role Of Blockchain-Enabled Electoral Systems, Ransome Chukwubuikem Enechukwu

Electronic Theses and Dissertations

Post-vote tampering during the collation and transmission of election results remains a persistent challenge in Nigerian elections, enabling manipulation of already-cast votes and weakening public trust in electoral outcomes. Existing technological interventions, including biometric voter accreditation and digital result transmission systems, improve voter authentication but do not adequately secure the post-vote result collation process. This thesis proposes a blockchain-enabled framework designed to protect the integrity of election results during the collation and transmission stages. Using a Design Science Research methodology, the study develops a permissioned blockchain framework based on Hyperledger Fabric that records polling-unit results as immutable ledger entries and …

Datapeer: A Hybrid Interaction Model Web Application Integrating Llms For Human–Llm Collaboration In Data Analysis And Exploration, William I. Bumcum

Honors Theses

DataPeer is a web application that combines open-ended high agency (OHA) and structured low-agency (SLA) interaction paradigms to support human-LLM collaboration in exploratory data analysis. DataPeer integrates a large language model (LLM) with a React frontend and FastAPI backend, allowing both qualitative and quantitative analysis of user-uploaded CSV datasets through a chat-based interface. Users can attach datasets and provide natural language queries, while the LLM provides data analysis to the user. This thesis investigates the integration of LLMs into data analysis workflows and addresses gaps in interaction design and user agency in LLM-driven data tools by offering a responsive interface …

Prediabetes Prediction Before Disease Onset Using Multimodal Health Data: A Machine Learning Approach, Luisa Veronica Gracia Mazuca

Open Access Theses & Dissertations

Prediabetes is a critical health condition that increases the risk of developing type 2 diabetes. The hemoglobin A1c (HbA1c) test diagnoses patients with prediabetes, but the disease has already caused metabolic alterations. Early detection is essential for timely interventions, and machine learning models offer a promising approach to identify prediabetic individuals through the analysis of biomarkers such as cytokines. We compared four classifiers-logistic regression, decision tree, random forest, and k-nearest neighbors - using cytokines (TNF-α, MCP-1, IL-1β, IL-6, IFN-γ), age, BMI, and waist-to-hip ratio (WHR). Models were evaluated using stratified 5-fold cross-validation and ROC-AUC. K-Nearest Neighbors (k-NN) achieved the highest …

Provenance Analysis Of Advanced Persistent Threats In Operational Technology Environments, Laura Aminta Guevara

Open Access Theses & Dissertations

Live vulnerability testing and penetration assessments of critical infrastructure are costly, complex operationally and, in many cases, unsafe to conduct directly against live systems, whether these are commissioned in-house and through third-party providers. For Operational Technology environments specifically, these constraints are further aggravated by the limited vendor support and inconsistent security patching available that characterize many industrial communication protocols. This significantly restricts the scope and feasibility of conventional penetration testing. At the same time, the increasing overlapping of OT systems with enterprise networks and the internet has expanded the attack surface of ICS infrastructure, making more pressing the need for …

Zero-Knowledge Proofs For Verifiable Machine Unlearning, Bidur Niroula

Open Access Theses & Dissertations

Machine unlearning aims to remove the influence of deleted data from a trained machine learning model. This is important because privacy regulations such as GDPR, CCPA, and PIPEDA give individuals the right to request the deletion of their personal data. Since unlearning can be expensive, a dishonest server may skip it or return an incorrect model and this motivates verifiable machine unlearning. Existing cryptographic approaches prove that the server executed a specific training or unlearning algorithm on the committed dataset, so the proof is tied to the algorithm's trajectory. Empirical verifiers avoid this cost but are known to be circumventable …

Adversarial Heterogeneous Agent Learning For Robotic Systems: A Framework For Coordinated Competitive Behaviors, Christopher T. Allred

All Graduate Theses and Dissertations, Fall 2023 to Present

Autonomous robot teams must move reliably, explain their actions, and work together—even in changing or adversarial settings. We present a structured, three-stage pathway that builds coordinated team behavior from strong single-robot skills. First, we develop robust legged-robot locomotion and interpretability using only internal actuator signals. From these proprioceptive cues, robots learn to classify terrain and predict short-term power use, enabling energy-aware movement without external sensors. We further analyze learned behaviors with motif discovery to reveal recurring sensor–action patterns, which clarify how agility emerges and guide reward design. Second, we compose these skills into heterogeneous teamwork using centralized training with decentralized …

Advancing Context-Aware Detection Of Socially Harmful Discourse Using Transformer-Based Models, Santosh Chapagain

All Graduate Theses and Dissertations, Fall 2023 to Present

Social media platforms are a central part of modern communication, shaping how people share ideas, build communities, and discuss social issues. While these spaces can support connection and self expression, they also enable the spread of harmful language such as hate speech. At the same time, social media is an important place where members of marginalized communities, including sexual and gender minorities, express stress, discrimination, and emotional challenges in ways that are often indirect and context dependent.

This research examines whether modern artificial intelligence systems can better identify harmful language and expressions of minority stress in online posts. The study …

Visualizing Probabilistic Model Checking: An Interactive Framework For Exploring Ctmc Models, Ishara Mawelle Kankanamge

All Graduate Theses and Dissertations, Fall 2023 to Present

Probabilistic model checking is a critical method for analyzing systems characterized by uncertainty, such as communication protocols, randomized algorithms, and biochemical networks. While formal verification tools provide precise numerical data about these systems, interpreting these results is often limited by large state space, high-dimensional state space and time dependent evolution. Current tools typically output raw numerical data, offering limited support for intuitively understanding the time-dependent behavior of a model. This research presents an interactive visualization framework designed to bridge the gap between complex numerical analysis and human intuition. The framework integrates coordinated visual interfaces, including lower-dimensional state-space projections and synchronized …

Student Programming Behavior With And Without Phone Notification Suppression, Gavin T. Eddington

All Graduate Theses and Dissertations, Fall 2023 to Present

Many students work on programming assignments while receiving notifications from their phones, such as text messages or social media alerts. These notifications can interrupt focus and make it harder to stay engaged with a task. This study examines whether silencing phone notifications helps students stay more focused while programming. 

We collected data from students in an introductory computer science course while they worked on programming assignments. Students completed some assignments with notifications silenced and others without. We measured their activity using software that records typing behavior and identifies when students take long pauses, which can indicate interruptions or loss of …

A Survey On Digital Reading Materials And Personal Study Of Christian Religious Texts, Teancum Price

All Graduate Theses and Dissertations, Fall 2023 to Present

Religion, including reading from religious texts such as scriptures, are a part of the daily lives of many people. Modern technology has influenced the way that this religious reading takes place, but its effects have not yet been studied. Existing research of the effects of technology on reading focus on topics such as reading comprehension, but the study of religious texts is often focused on achieving a religious experience, so the existing research does not capture the whole scope of these changes. In our study, we surveyed two universities (Utah State University and Abilene Christian University) to ask individuals how …

An Alternative Representation For Temporal Json, Bishal Sarkar

All Graduate Theses and Dissertations, Fall 2023 to Present

JavaScript Object Notation (JSON) is a common format for representing and exchanging data on the web. Most systems only keep the current version of a JSON document, even though, in many situations, it is also important to know how that document changed over time. For example, an application might need to answer questions such as “What did this record look like last week?” or “How has this list grown over the past year?” A simple way to keep this history is to store a full copy of the document every time it changes, but this quickly becomes wasteful, most of …

Spike-Sorting Algorithm For Neuropixel Probes, Luis David Davila

Open Access Theses & Dissertations

Modern extracellular neural probes like Neuropixels, allow for high-density extracellular neural probes to record terabytes of electrophysiological brain data. Spike sorting is the process of isolating individual neurons on this data through various clustering and filtering techniques. Modern spike sorting algorithms are held back by their need for human intervention to separate high-quality from low quality clusters, due to the volume of data that can be collected a completely automated approach is required. To address this requirement, we have developed a framework to preprocess, cluster, grade, and separate high/low quality clustering results using custom models trained on the grades. To …

Development Of A High-Throughput Framework For Studying Choice-Movement Dynamics In Freely Moving Rats Across Motivational And Pharmacological States, Atanu Giri

Open Access Theses & Dissertations

This thesis develops and applies high-throughput behavioral assays and analysis pipelines to study how external contingencies and internal state shape rodent decision-making. First, it introduces RECORD (Reward-Cost in Rodent Decision-making), a modular platform that combines 3D-printed arenas, microcontroller-based control, and closed-loop trial structure to deliver graded rewards and costs in a foraging-like environment. RECORD supports scalable data collection across multiple arenas and a software stack for parsing, databasing, and extracting spatiotemporal behavioral features and psychometric choice functions. Using this framework, the thesis quantifies how animals integrate sucrose reward magnitude with aversive light cost, revealing structured individual differences and sex-dependent movement …

Three Essays On Workplace Ethics And Ai: Conceptualizing, Scale Development, And Validation Of Self-Value Actualization, And Ai-Enabled High-Performance Work Systems, Mansura Nusrat

Open Access Theses & Dissertations

This dissertation advances understanding of workplace ethics and responsible AI integration across three interconnected essays unified by social cognitive theory. My first essay introduces self-value actualization (SVA), a novel construct defined as the dynamic, integrated psychological process through which individuals continually strive to align and fulfill their core moral values through observable professional behavior. Drawing on social cognitive theory and emotional intelligence theory, I conceptualize SVA as a higher-order self-regulatory orientation comprising three mutually reinforcing processes: value congruence, moral reflection, and adaptive morality. I developed and validated a 9-item SVA scale across four studies using expert panels, exploratory factor analysis, …

Understanding Machine Learning Model Behavior Under Fairness And Privacy Constraints, David Anthony Sanchez

Open Access Theses & Dissertations

Machine learning systems deployed in high-stakes domains are increasingly expected to satisfy demands beyond predictive accuracy-including fairness across demographic groups, protection of sensitive information, and explanations that human stakeholders can inspect and trust. This thesis investigates how those demands can be met through learning frameworks that explicitly govern the relationship between data and models, arguing that trustworthiness is a design problem rather than a post hoc correction. The thesis is organized around three studies, each targeting a distinct point of data-facing control. The first develops CondFairGen, a fairness-aware conditional generator for tabular data that improves subgroup equity by dynamically reweighting …

Bayesian Deep Learning For Photovoltaic Power Forecasting: A Probabilistic Framework For Uncertainty Quantification And Grid Reliability Optimization, Pablo Abraham Bustamante

Open Access Theses & Dissertations

The global energy landscape is undergoing a profound transformation, driven by the urgent need to decarbonize power systems, enhance energy security, and meet growing electricity demands. Solar photovoltaic (PV) power has emerged as a critical component of future energy infrastructure due to its abundance, scalability, and cost-effectiveness. However, PV generation is inherently variable and weather-dependent, introducing significant uncertainty into grid operations and complicating the task of balancing supply and demand. Accurate forecasting of PV power generation-particularly on day-ahead and hour-ahead horizons-has become a strategic necessity for grid stability, economic efficiency, and environmental sustainability. PV output is influenced by numerous factors, …

Timing And Synchronization: Software And Hardware Approaches For Precision Maximizing, Christina Alicia Alejandra Carreon Jimenez

Open Access Theses & Dissertations

This thesis explores the design of synchronization mechanisms that allow multiple FPGA boards to operate as if they were a single coherent timing domain. The solutions span three layers: a software PLL for E1 telecommunication links, a PCIe-based timestamp exchange protocol, and a hardware-level multi-FPGA mesh architecture. Across these layers, the work demonstrates that practical, low-cost synchronization can achieve sub-microsecond accuracy without the burden of specialized hardware such as GPSDOs or White Rabbit infrastructure. Experiments show stable alignment within the nanosecond-microsecond range, validating the feasibility of the proposed methods for SDR and telecom applications.

The Impact Of Quantum Computing On Ransomware, Byron Denham

Graduate Theses and Dissertations

Ransomware is one of the most pervasive and dangerous threats to cybersecurity today. Attacks involving ransomware have been responsible for the disruption of critical services in many fields including healthcare, education, and government. In the current paradigm, crypto ransomware relies on asymmetric cryptography to perform its operations in a way that ensure the victim’s only chance for file recovery is by paying the attacker’s requested ransom payment. However, advancements in quantum computing threaten the asymmetric cryptography that ransomware relies on. It has been shown that, once developed, a sufficiently powerful quantum computer will have the ability to break asymmetric cryptography …

Modeling Causal Interactions Across Brain Functional Systems For Population-Specific Disease Analysis, Alissen Moreno

Theses and Dissertations

Functional brain connectivity provides critical insight into neural mechanisms underlying neurodegenerative and affective disorders. Traditional neuroimaging studies rely on undirected or region-specific connectivity measures developed predominantly using racially homogeneous cohorts, limiting fairness and generalizability across diverse populations.

We propose a population-aware framework modeling directed causal interactions across large-scale brain functional subnetworks. Resting-state fMRI data from the HABS-HD cohort were used to construct subject-level causal connectivity matrices via ICA-LiNGAM, aggregated into interpretable system-level hyper-connectomes representing interactions among eleven canonical brain subsystems. These features trained nonlinear models for Alzheimer’s disease stage classification and trait worry prediction.

Results demonstrate that MLP models outperform …

Agentcite: Trustworthy Ai Agents For Information Verification Across Referenced Documents, Eymen Yigit

Master's Theses

This thesis presents AgentCite, a multi-agent framework for automated verification of referenced numerical data in research documents. The framework employs a hybrid design in which LLM-based agents handle document understanding and evidence retrieval, while deterministic components manage structured parsing and value comparison, improving consistency and reproducibility while reducing token consumption and execution time compared to fully agentic approaches.

AgentCite consists of three autonomous agents: a Negotiator, a Main Document Agent, and a Source Documents Agent, coordinated through a fixed tool-call pipeline. The Negotiator orchestrates verification by extracting tabular data from the main document, retrieving evidence from per-source vector stores, and …

Federated Neuromorphic Intelligence: Advancing Robustness, Efficiency, And Continual Adaptation In Edge Environments, Manh V. Nguyen

Dissertations

This dissertation investigates how spiking neural networks (SNNs) can improve federated edge intelligence by advancing three interconnected goals: communication efficiency, adversarial robustness, and continual adaptation. As edge computing deployments expand across Internet of Things (IoT), sensing, and privacy-sensitive applications, conventional federated learning approaches built around artificial neural networks (ANNs) face growing limitations in power consumption, bandwidth demand, and resilience to real-world uncertainty. SNNs offer an alternative computational paradigm based on event-driven, sparse, and temporally structured processing that is naturally suited to constrained edge environments. However, their behavior in practical federated settings remains insufficiently understood.

To address this gap, this dissertation …

Conditioning Hierarchical Diffusion Transformers On Rf Circuit Parameters, Ethan Morton

McKelvey School of Engineering Graduate Student Theses & Dissertations

As modern ML techniques have become increasingly advanced, they have begun to be integrated into wireless RF systems for classification, identification, and spectrum management. Deep Neural Networks (DNNs) enable RF system operators and designers to design more flexible systems with greater robustness to errors and attacks. However, neural networks require significant amounts of properly annotated data to train. Current data labeling methods lack the ability to obtain reliable true labels for circuit properties such as carrier frequency offset (CFO), power amplifier (PA) non-linearity, and in-phase/quadrature (IQ) imbalance. This thesis investigates the efficacy of a novel architecture, RF-Diffusion, for generating high-quality …

Analysis Of Volumetric Reconstruction Methods In Archaeology, Cade O'Fallon

All-Inclusive List of Electronic Theses and Dissertations

The use of Structure from Motion (SfM) photogrammetry in archaeological projects is entering a period of transition; a method of producing 3D data that is traditionally embraced as tool for documentation is being explored for its analytic potential. One such way SfM photogrammetry can be used analytically is through the calculation of volumes using photogrammetric data. The tools exist for archaeologists to be able to create and quantify volumetric models; however, the discourse on these methods is still so new there is no consensus on the best method for conducting volumetric work. Different methods of creating and isolating volumetric space …

Market Reactions To Deceptive Language In Fake News: Implications From Language Expectancy Theory And Transfer Learning, Ka Chung Ng, Ping Fan Ke, Ping Fan, Mike So, Tam, Kar Yan

Research Collection School Of Computing and Information Systems

The advent of generative artificial intelligence (AI) has heightened the proliferation of fake news. A key challenge is the limited real-world data to investigate the societal impact of fake news produced by generative AI. In this paper, we examine stock market reactions to financial news articles that exhibit stylometric similarity to human-crafted and AI-crafted fake financial news. Grounded in language expectancy theory, we employ a style-based transfer learning model, pre-trained to recognizing deceptive language employed in various types of fake news intricacies. We then apply this model to a comprehensive dataset of financial news, assigning a “veracity style score” to …

Enhancing Traffic Safety Through Ai-Driven, Privacy-Preserving, And Secure Impaired Driving Detection Systems, Razan Alsulieman

Dissertations

Drunk driving remains a major threat to road safety worldwide, contributing significantly to traffic injuries and fatalities each year. Traditional detection approaches are largely reactive and vehicle-centric, relying on in-vehicle sensors, breathalyzers, or post-incident enforcement. These methods often depend on driver cooperation, intrusive hardware installations, or limited monitoring environments, restricting their scalability and effectiveness in large transportation systems. At the same time, modern cities increasingly deploy roadside cameras, surveillance networks, and drone- based monitoring systems, creating new opportunities for proactive intoxication detection at the infrastructure level. However, leveraging such external monitoring introduces challenges related to secure data collection, reliable AI-based …