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Novel Electrochemical Interfaces Based On Functional Nanomaterials And Their Related Applications, Cheng-Zhou Zhu, Lei Han, Shao-Jun Dong

Journal of Electrochemistry

Due to the unique optical, electronic, magnetic and catalytic properties, functional nanomaterials provide new opportunities for the rapid development in a variety of disciplines and show considerable promise in different fields. Specifically, constructions of the novel electrochemical interface using various nanomaterials and exploring their advanced electrochemical properties have received great attention to develop electrochemical devices with potential applications. In this account, we focus on our up-to-date progress in the construction of novel electrochemical interfaces based on nanomaterials, mainly highlighting our research advances on electrochemical sensors, fuel cells and fluorescence spectroelectrochemistry. These novel advanced nanomaterials endow them excellent performances and open …

Effects Of Oxygen Coverage And Hydrated Proton Model On The Dft Calculation Of Oxygen Reduction Pathways On The Pt(111) Surface, Li-Hui Ou, Sheng-Li Chen

Journal of Electrochemistry

DFT calculation is used to study various possible steps in the oxygen reduction reaction (ORR), including the adsorption and dissociation process of O₂ and the serial protonation process of dissociated products to form H₂O on the Pt(111) surface. By using slabs of different sizes, and different numbers of pre-adsorbed oxygen atoms, the coverage effects on the pathways are investigated. The calculated results using different hydrated proton models are also compared. It is shown that the initial step of the ORR is the formation of a protonated end-on chemisorbed state of OOH*, which can transform to an unprotonated …

Electrochemistry At Liquid/Liquid Interfaces And Its Recent Progresses, Jing Gu, Yong-Hui Qiao, Xin-Yu Zhu, Xiao-Hong Yin, Xin Zhang, Ye Chen, Zhi-Wei Zhu, Yuan-Hua Shao

Journal of Electrochemistry

Electrochemistry and electroanalytical chemistry at a liquid/liquid interface have attracted much attention in the past few decades since they have been closely related to many applications including exploration in mechanisms of extraction processes and chemical sensing, as well as investigations in phase transfer catalysis, drug release and mimicking the function of biological membranes. In this review, recent progresses in this field in the last decade, especially the investigations in microstructure of liquid/liquid interface, charge (ion and electron) transfer reactions and functionalization of liquid/liquid interfaces, are reviewed.

Laser-Induced Fluorescence Imaging Of Calcium And Barium Ion Beams In The Second Vacuum Stage Of A Commercial Inductively Coupled Plasma Mass Spectrometer, Alisa Jane Edmund

Theses and Dissertations

Inductively coupled plasma-mass spectrometers (ICP-MS) have become the workhorses of many analytical labs over the past few decades. Despite the instruments' high sensitivities and low detection limits there is still a demand for improvements in several aspects of their performance. One area of improvement is in the understanding of "space charge effects" Space charge effects are classified as problems associated with the ion beam. Problems are created when the mutual repulsions of the ions make consistent focusing of the ion beam difficult. This is particularly problematic with samples containing a low concentration analyte contained within a high salt solution matrix, …

Application Of Nuclear Magnetic Resonance Based Metabolomics To Study The Central Metabolism Of Staphylococci, Bo Zhang

Department of Chemistry: Dissertations, Theses, and Student Research

Metabolomics studies the collection of small molecules (metabolites) involved in enzymatically catalyzed reactions, cell signaling and cellular structure. Perturbations in metabolite concentrations have been used to reflect the activity of corresponding enzymes or proteins. Nuclear magnetic resonance (NMR) spectroscopy is a well-known approach for the structure determination of biological macromolecules. Alternatively, NMR has recently been established as a valuable tool of metabolomics, in which NMR spectral signals correlate small molecules with cellular activities. This has been accomplished through the chemometric analysis of high-throughput one dimensional ¹H spectra (metabolic fingerprinting) and quantitative metabolite identification based on two dimensional ¹H, …

Synthesis, Characterization And Mechanistic Studies Of Biomolecules@Mesomofs, Yao Chen

USF Tampa Graduate Theses and Dissertations

Encapsulation of biomolecules is of great interest to research advances related to biology, physiology, immunology, and biochemistry, as well as industrial and biomedical applications such as drug delivery, biocatalysis, biofuel, food and cosmetics. Encapsulation provides functional characteristics that are not fulfilled by free biomolecules and stabilizes the fragile biomolecules. In terms of biocatalysis, solid support can often enhance the stability of enzymes, as well as facilitate separation and recovery for reuse while maintaining activity and selectivity. Various kinds of materials have been used for encapsulation of biomolecules, among which, porous materials are an important group. Metal-organic frameworks (MOFs) have attracted …

Glycosylation Modulates Melanoma Cell Α2Β1 And Α3Β1 Integrin Interactions With Type Iv Collagen, Maciej J. Stawikowski, Beatrix Aukszi, Roma Stawikowska, Mare Cudic, Gregg B. Fields

Chemistry and Physics Faculty Articles

Although type IV collagen is heavily glycosylated, the influence of this posttranslational modification on integrin binding has not been investigated. In the present study, galactosylated and non-galactosylated triple-helical peptides have been constructed containing the α1(IV)382-393 and α1(IV)531-543 sequences, which are binding sites for the α2β1 and α3β1 integrins, respectively. All peptides had triple-helical stabilities of 37 °C or greater. The galactosylation of Hyl393 in α1(IV)382-393 and Hyl540 and Hyl543 in α1(IV)531-543 had a dose dependent influence on melanoma cell adhesion which was much more pronounced in the case of α3β1 integrin binding. Molecular modeling indicated that galactosylation occurred on the …

Metabolomics Of Apcmin/+ Mice Genetically Susceptible To Intestinal Cancer, Jean Eudes J. Dazard, Yana Sandlers, Stephanie K. Doerner, Nathan A. Berger, Henri Brunengraber

Chemistry Faculty Publications

Background: To determine how diets high in saturated fat could increase polyp formation in the mouse model of intestinal neoplasia, ApcMin/+, we conducted large-scale metabolome analysis and association study of colon and small intestine polyp formation from plasma and liver samples of ApcMin/+ vs. wild-type littermates, kept on low vs. high-fat diet. Label-free mass spectrometry was used to quantify untargeted plasma and acyl-CoA liver compounds, respectively. Differences in contrasts of interest were analyzed statistically by unsupervised and supervised modeling approaches, namely Principal Component Analysis and Linear Model of analysis of variance. Correlation between plasma metabolite concentrations and polyp numbers was …

A Novel Label-Free Colorimetric Assay For Dna Concentration In Solution, Molla R. Islam, Michael J. Serpe

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Optical devices were fabricated by sandwiching a “monolithic” poly(N-isopropylacrylamide-co-N-(3-aminopropyl) methacrylamide hydrochloride) (pNIPAm-co-APMAH) microgel layer between two semitransparent Au layers. These devices, referred to as etalons, exhibit characteristic multipeak reflectance spectra, and the position of the peaks in the spectra primarily depends on the distance between the Au surfaces mediated by the microgel layer thickness. Here, we show that the positively charged microgel layer can collapse in the presence of negatively charged single stranded DNA (ssDNA) due to ssDNA induced microgel crosslinking. The collapse results in a change in the etalon's optical properties, which can be used to detect target DNA …

Environmentally Persistent Free Radicals (Epfrs). 3. Free Versus Bound Hydroxyl Radicals In Epfr Aqueous Solutions, Lavrent Khachatryan, Cheri A. Mcferrin, Randall W. Hall, Barry Dellinger

Collected Faculty Scholarship

Additional experimental evidence is presented for in vitro generation of hydroxyl radicals because of redox cycling of environmentally persistent free radicals (EPFRs) produced after adsorption of 2-monochlorophenol at 230 °C (2-MCP-230) on copper oxide supported by silica, 5% Cu(II)O/silica (3.9% Cu). A chemical spin trapping agent, 5,5-dimethyl-1-pyrroline-N-oxide (DMPO), in conjunction with electron paramagnetic resonance (EPR) spectroscopy was employed. Experiments in spiked O¹⁷ water have shown that ∼15% of hydroxyl radicals formed as a result of redox cycling. This amount of hydroxyl radicals arises from an exogenous Fenton reaction and may stay either partially trapped on the surface …

Development And Assessment Of Self-Explaining Skills In College Chemistry Instruction, Adrian Villalta-Cerdas

USF Tampa Graduate Theses and Dissertations

The prevalent trend in chemistry instruction relies on what has been described as the classroom game. In this model, students take a passive role and the instructor does all the explaining (thinking), and learning is trivialized to knowing the correct answers (memorizing) and being able to produce them when prompted (regurgitating). The generation of explanations is central to scientific and technological development. In the process of figuring out explanations, the generation of inferences relies on the application of skills associated with scientific behaviors (e.g., analytical reasoning and critical thinking). The process of explanation generation causes a deeper analysis and revision …

A New Liquid Chromatography/Tandem Mass Spectrometry Method For Quantification Of Gangliosides In Human Plasma, Qianyang Huang, Xiang Zhou, Danting Liu, Baozhong Xin, Karen Cechner, Heng Wang, Aimin Zhou

Chemistry Faculty Publications

Gangliosides are a family of glycosphingolipids characterized by mono- or polysialic acid-containing oligosaccharides linked through 1,3- and 1,4-β glycosidic bonds with subtle differences in structure that are abundantly present in the central nervous systems of many living organisms. Their cellular surface expression and physiological malfunction are believed to be pathologically implicated in considerable neurological disorders, including Alzheimer and Parkinson diseases. Recently, studies have tentatively elucidated that mental retardation or physical stagnation deteriorates as the physiological profile of gangliosides becomes progressively and distinctively abnormal during the development of these typical neurodegenerative syndromes. In this work, a reverse-phase liquid chromatography/tandem mass spectrometry …

Characterization Of Methylene Diphenyl Diisocyanate Protein Conjugates, Morgen Mhike

Dissertations and Theses

Diisocyanates (dNCO) such as methylene diphenyl diisocyanate (MDI) are used primarily as cross-linking agents in the production of polyurethane products such as paints, elastomers, coatings and adhesives, and are the most frequently reported cause of chemically induced immunologic sensitization and occupational asthma (OA). Immune mediated hypersensitivity reactions to dNCOs include allergic rhinitis, asthma, hypersensitivity pneumonitis and allergic contact dermatitis.

There is currently no simple diagnosis for the identification of dNCO asthma due to the variability of symptoms and uncertainty regarding the underlying mechanisms. Immunological sensitization due to dNCO exposure is traditionally thought to require initial conjugation of the dNCO to …

Interactions Of Eukaryotic Translation Initiation Factors And 3' Untranslated Region Of Barley Yellow Dwarf Virus Mrna During Protein Synthesis: A Study Of Equilibrium Binding, Kinetics And Thermodynamics, Bidisha Banerjee

Dissertations, Theses, and Capstone Projects

Eukaryotic initiation factor (eIF) 4F binding to mRNA is the first committed step in cap-dependent protein synthesis. Barley Yellow Dwarf Virus (BYDV) employs a cap-independent mechanism of translation initiation which is mediated by a structural element BTE (BYDV translation element) located in the 3’ UTR of its mRNA. eIF4F bound the BTE and a translational inactive mutant with high affinity; thus questioning the role of eIF4F in translation of BYDV. To examine the effects of eIF4F in BYDV translation initiation, BTE mutants with widely different in vitro translation efficiencies ranging from 5-164% compared to WT were studied. Using fluorescence anisotropy …

Studies On The Synthesis Of Orthogonally Protected Azalanthionines, And Of Routes Towards B-Methyl Azalanthionines, By Ring-Opening Of N-Activated Aziridine-2-Crboxylates, Keith O'Brien, Keith Ó Proinsias, Fintan Kelleher

Articles

Orthogonally protected azalanthionines were successfully synthesised by the ring-opening of N-activated aziridine-2-carboxylates with protected diaminopropanoic acids (DAPs). The required DAPs were also prepared by ring-opening of N-activated aziridine-2-carboxylates with para-methoxybenzylamine, but it was found that the choice of aziridine protecting groups dictated both the success of the reaction as well as the regioselectivity of the isolated products. Attempts to extend the methodology to the preparation of the more sterically demanding b-methyl azalanthionines have, so far, been unsuccessful.

Bio-Compatible Polymer Coatings Using Low Temperature, Atmospheric Pressure Plasma, Susan Farhat, Mary Gilliam, Ali Zand, Montserrat Rabago-Smith

Chemistry & Biochemistry Presentations And Conference Materials

Current research has been dedicated to investigating the viability of atmospheric pressure plasmas for use in coating technology. In addition to being more cost effective and efficient, atmospheric pressure plasma offers a more streamlined process, as it can be employed directly into the production line. Atmospheric pressure plasma has been used in applications including biocompatibility, hydrophilicity/hydrophobicity, and coating with antibacterial films. Polyethylene is used as a biocompatible surface for ball and socket joint replacements, which are under constant wear. Atmospheric pressure plasma treatment was used to change the surface chemistry by grafting various biocompatible polymers to the polyethylene surface, as …

Molecular Encapsulation In Kinetically Trapped, Hydrogen-Bonded Pyrogallolarene Hexamers, Jennifer Christine Chapin Lake

Electronic Theses and Dissertations

Pyrogallolarene and resorcinarene hexamers are hydrogen-bonded capsules that self-assemble in the solid state and can be studied in gaseous and solution phases. Guest loading within pyrogallolarene hexamers in solution has primarily been comprised of solvent molecules with some tertiary amines. A novel solvent-free method for loading guests into the interior of the hexamer has been shown to be effective for encapsulation of a variety of molecules. Aromatic and aliphatic compounds have particularly high guest loading within the hexamers and often result in kinetically stable guest-filled capsules in solution.

Kinetic studies of the encapsulation complexes of anthracene, biphenyl, fluoranthene, fluorene, naphthalene, …

Nitroxide Radicals For Low Frequency Electron Paramagnetic Resonance Imaging (Epri), Joshua R. Biller

Electronic Theses and Dissertations

Optimization of nitroxides as probes for EPR imaging requires detailed understanding of spectral properties such as spin lattice relaxation times, spin packet linewidths, and nuclear hyperfine splitting. Initial measurements of relaxation times for six low molecular weight nitroxides at X-band stimulated further measurement at frequencies between 250 MHz and 34 GHz. The impact of tumbling was studied with perdeuterated 2,2,6,6-tetramethyl-4-piperidinyl-1-oxyl (PDT) in five solvents with viscosities resulting in tumbling correlation times, τ_R, between 4 and 50 ps. A set of three ¹⁴N/¹⁵N pairs of nitroxides in water was selected such that τ_R varied between …

Fabrication Of Multifunctional Ferromagnetic Au₃Pd-Cose Nanoparticles, Wipula P. Liyanage, Sukhada Mishra, Kai Song, Manashi Nath

Chemistry Faculty Research & Creative Works

We have synthesized multifunctional anisotropic Au₃Pd-CoSe nanoparticles on Si substrate through a catalyst aided chemical vapour deposition technique. the technique utilized volatile cobalt acetylacetonate and elemental selenium as precursors while sputter coated Au-Pd (3:2) film acted as a catalyst. the typical growth conditions led to clear segregation of the hetero-compositions (i.e. Au₃Pd and CoSe) in the product nanostructures thereby preserving the functionality of both the phases. the degree of crystallinity of the individual phases in the composite nanostructure was fairly high. the bifunctional nanoparticles show soft ferromagnetic behaviour at room temperature and optical activity making them …

An Investigation Of Poly(N-Isopropylacrylamide) For Applications With Microfluidic Paper-Based Analytical Devices, Haydn Thomas Mitchell

Master's Theses

N,N′-methylenebisacrylamide-crosslinked poly(N-isopropylacrylamide), also known as P(NIPAM), was developed as a fluid delivery system for use with microfluidic paper-based analytical devices (microPADs). MicroPADs are postage-stamp-sized devices made out of paper that can be used as platforms for low-cost, simple-to-use point-of-care diagnostic assays. P(NIPAM) is a thermally responsive polymer that absorbs aqueous solutions at room temperature and will expel the solutions to microPADs when heated. The fluid delivery characteristics of P(NIPAM) were assessed, and P(NIPAM) was able to deliver multiple solutions to microPADs in specific sequences or simultaneously in a laminar-flow configuration. P(NIPAM) was then shown to be suitable …

In Vitro Biosynthesis And Chemical Identification Of Udp-N-Acetyl-D-Quinovosamine (Udp-D-Quinac), Tiezheng Li, Laurie Simonds, Evgenii L. Kovrigin, K. Dale Noel

Chemistry Faculty Research and Publications

N-acetyl-d-quinovosamine (2-acetamido-2,6-dideoxy-d-glucose, QuiNAc) occurs in the polysaccharide structures of many Gram-negative bacteria. In the biosynthesis of QuiNAc-containing polysaccharides, UDP-QuiNAc is the hypothetical donor of the QuiNAc residue. Biosynthesis of UDP-QuiNAc has been proposed to occur by 4,6-dehydration of UDP-N-acetyl-d-glucosamine (UDP-GlcNAc) to UDP-2-acetamido-2,6-dideoxy-d-xylo-4-hexulose followed by reduction of this 4-keto intermediate to UDP-QuiNAc. Several specific dehydratases are known to catalyze the first proposed step. A specific reductase for the last step has not been demonstrated in vitro, but previous mutant analysis suggested that Rhizobium etli gene wreQ might encode this reductase. Therefore, this gene was cloned and expressed …

Development And Validation Of Lc–Ms/Ms Method For Quantitative Determination Of (−)-Securinine In Mouse Plasma, Simuli L. Wabuyele, David Wald, Yan Xu

Chemistry Faculty Publications

(−)-Securinine (SE) is a major alkaloid found in plant Securinega suffruticosa, which has a wide range of pharmacological activities including anticancer, anti-parasitic and central nervous system stimulating effects, etc. To aid the pharmacological study of SE, we developed an LC–MS/MS method for quantitative determination of SE in mouse plasma. In this method, plasma samples were first prepared with salting-out assisted liquid–liquid extraction using cold acetonitrile (−20 °C) and 2.00 M ammonium acetate. Separation of SE and the internal standard (IS) from sample matrix was achieved on a Gemini Nx C18 column using 40% acetonitrile and 60% 10.0 mM ammonium acetate …

Biophysical Characterization Of The First Four Metal-Binding Domains Of Human Wilson Disease Protein, Alia V.H. Hinz

Dissertations

Wilson disease protein (WLNP) is a P_1b-type ATPase crucial for maintaining copper homeostasis in humans. Mutations in this protein result in the autosomal recessive disorder Wilson disease, a condition characterized by copper accumulation in the liver and brain. WLNP provides copper for incorporation into cuproproteins and exports excess copper into the bile for excretion. There are six metal-binding domains (MBDs) in WLNP, found within the first 650 amino acids of this 1,465 amino acid protein. Though each MBD has a different amino acid sequence, all MBDs possess a similar ferredoxin fold with a conserved hydrophobic core and a …

Discovery Of Novel Serum Biomarkers For Diagnosing And Staging Alzheimer's Disease, Dipti Jigar Shah

Theses and Dissertations

Discovery of Novel Serum Biomarkers for Diagnosing and Staging Alzheimer’s DiseaseDipti Jigar ShahDepartment of Chemistry and Biochemistry, BYUDoctor of PhilosophyAlzheimer’s disease (AD) is an untreatable neurologic disease affecting more than 5 million Americans, most over 60 years of age. Protein plaques and neurofibrillary tangles typify AD brain pathology and are thought to cause the progressive dementia and brain shrinkage observed in AD. Currently there are no methods to diagnose the disease at a time before damage becomes irreversible.Biochemical tests for AD using cerebrospinal fluid analysis or neuroimaging are not yet sufficiently sensitive and specific, and they are invasive. This points …

Heavy Metal Analysis In Lens And Aqueous Humor Of Cataract Patients By Total Reflection X-Ray Fluorescence Spectrometry, Martina Schmeling, Bruce I. Gaines, Susanne Tidow-Kebritchi

Chemistry: Faculty Publications and Other Works

The human eye is continuously exposed to the environment yet little is known about how much of toxins, specifically heavy metals are present in its different parts and how they influence vision and acuity. To shed light into this subject, aqueous humor and lens samples were collected from 14 cataract patients to study the presence and concentration of selected metals in the eye. Subjects undergoing routine cataract surgery were consecutively enrolled for study by simple random sampling. Prior to surgery, subject demographic were compiled. The surgical procedure involved small incision cataract removal using phacoemulsification. During the procedure, a small aliquot …

Nanocarbon Immobilized Membrane For Separation And Analysis, Madhuleena Bhadra

Dissertations

Membrane processes classically cover a wide range of applications associated with various aspects of separation and purification. Over the last few years, membrane based processes have received much interest due to their compact and modular architecture, low energy consumption and cost effective separation. With the development of diverse nanomaterials which can serve as nanosorbents, or provide specific morphology for selective solute transport, recent years have witnessed the emergence of nanocarbon based membranes that can address some of the limitations of conventional membrane processes and make feasible the next generation of breakthroughs.

The objective of this research is the exploration of …

Use Of Carbon Dioxide (Co2) And Its Congeners For The Synthesis Of Small Value Added Chemicals Utilizing Chlorostannoxane Catalysts, Sharon Pulla

Theses and Dissertations

Carbon dioxide (CO2) is an abundant, environmentally benign and renewable source of carbon. Use of CO2 may potentially end the use of other toxic C1 synthons, such as phosgene, carbon monoxide, and isocyanate. However, the extreme inertness of CO2 presents great difficulty for its use in organic synthesis. In Chapter 3, the synthesis of cyclic carbonates from corresponding epoxides under low pressures of CO2 (300 psi), relatively mild temperature (130 oC) using chlorostannoxane catalysts is discussed. Activities of the catalysts have been optimized in the pressure range of 100-700 psi, temperature range of 100-130 oC, with reference to propylene oxide. …

High Ionic Strength Narrows The Population Of Sites Participating In Protein Ion-Exchange Adsorption: A Single-Molecule Study, Lydia Kisley

Faculty Scholarship

The retention and elution of proteins in ion-exchange chromatography is routinely controlled by adjusting the mobile phase salt concentration. It has repeatedly been observed, as judged from adsorption isotherms, that the apparent heterogeneity of adsorption is lower at more-eluting, higher ionic strength. Here, we present an investigation into the mechanism of this phenomenon using a single-molecule, super-resolution imaging technique called motion-blur Points Accumulation for Imaging in Nanoscale Topography (mbPAINT). We observed that the number of functional adsorption sites was smaller at high ionic strength and that these sites had reduced desorption kinetic heterogeneity, and thus narrower predicted elution profiles, for …

Branching Into Rnai: Synthesis, Characterization And Biology Of Branch And Hyperbranch Sirnas, Anthony Muriithi Maina

Seton Hall University Dissertations and Theses (ETDs)

The cancer epidemic continues to afflict millions of humans world-wide each year and despite a renewed hope with the development of new and improved forms of therapy, a cure for cancer remains an elusive goal. This is partly related to the rise of resilient forms of tumors that have evolved with resistance towards conventional chemotherapy and radiation treatments. Moreover, these non-specific therapeutic regimens are highly toxic, leading to severe immunosuppressive effects which poisons the body and compromises the road towards remission. In an effort to mitigate these limitations, cancer-targeting approaches are currently experiencing a renaissance in the translation of new …

Laser Intensity And Ionic Strength Dependence Of The Aqueous Nitrate And Carbonate Ion Raman Spectra, Samuel White

Mahurin Honors College Capstone Experience/Thesis Projects

The geometry (and hence vibrational modes) of aqueous nitrate ion, NO₃^-, is known to depend on the solution composition—concentration, counter ions, etc. If a definite relationship between the vibrational spectrum and ionic strength of the solution could be established, it could be a useful monitor of solution composition over time. This would be valuable in studying the reaction rates and mechanisms of reactions involving nitrate in an aqueous environment, such as its photolysis in snow. Previous work in our lab observed a split peak at the symmetric-stretch mode of nitrate, though this mode does not usually show …