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Exploring The Effect Of Climate Change On Biological Systems, Nardos Sori

Chemistry & Biochemistry Theses & Dissertations

The present and potential future effect of global warming on the ecosystem has brought climate change to the forefront of scientific inquiry and discussion. For our investigation, we selected two organisms, one from cyanobacteria and one from a cereal plant to determine how climate change may impact these biological systems. The study involved understanding the physiological and adaptive responses at both the genetic and protein function levels to counteract environmental stresses. An increase in atmospheric carbon dioxide is a key factor in global climate change and can lead to alterations in ocean chemistry. Cyanobacteria are important, ancient and ubiquitous organisms …

Blue Carbon In Coastal Freshwater/Brackish Marshes On The Barrier Islands Of Virginia: Belowground Carbon Dynamics, Nathan M. Sedghi

Biological Sciences Theses & Dissertations

Some coastal ecosystems sequester substantially more carbon (blue carbon) than land locked systems due to high net primary production and deposition associated with oceanic influences. Most blue carbon research has focused on mangroves, seagrass beds, and salt marshes. Studies on blue carbon potential of coastal freshwater marshes are less common. Barrier islands frequently flood, with seawater reaching interior ecosystems. I examined brackish/freshwater marshes on Virginia barrier islands for possible roles as blue carbon systems. I studied four interior marshes on Hog Island, which varied in proximity to a direct overwash path and protection by a trail berm that divides northern …

In Vivo Near Ir Fluorescent Imaging Of Hollow Polymeric Nanocapsules, Venkata Suresh Patthipati

Biological Sciences Theses & Dissertations

Medical Imaging has been an integral component in medical diagnosis and therapeutics. It is frequently used in conjunction with other treatment modalities and has been used for developing applications that range from cancer management to clinical practice. Nanotechnology and its applications are foreseen to have a profound impact on life sciences. Nanomaterial based imaging has a significant potential in addressing medical challenges such as tumor localization, targeted delivery of drugs and real time diagnosis and management of circulation pathology. In particular, polymer based nanoparticles are increasingly being developed as they can be customized according to the diagnostic and/or therapeutic requirements. …

Hybrid Computational Toxicology Models For Regulatory Risk Assessment, Prachi Pradeep

Dissertations (1934 -)

Computational toxicology is the development of quantitative structure activity relationship (QSAR) models that relate a quantitative measure of chemical structure to a biological effect. In silico QSAR tools are widely accepted as a faster alternative to time-consuming clinical and animal testing methods for regulatory risk assessment of xenobiotics used in consumer products. However, different QSAR tools often make contrasting predictions for a new xenobiotic and may also vary in their predictive ability for different class of xenobiotics. This makes their use challenging, especially in regulatory applications, where transparency and interpretation of predictions play a crucial role in the development of …

Synthetic And Mechanistic Studies Of Ruthenium Catalyzed C-C, C-N And C-O Bond Activation Reactions, Nishantha Kumara Kalutharage

Dissertations (1934 -)

Transition metal catalyzed selective C-C, C-N and C-O bond activation reactions are fundamentally important in organometallic chemistry and organic synthesis. Catalytic C-C, C-N and C-O activation are highly valuable for reforming processes of crude oils. Significant research has been devoted to transition metal mediated C-C, C-N and C-O bond cleavage reactions to form new compounds as these processes are expected to provide novel ways to transformation of inexpensive hydrocarbons into more commercially valuable products such as pharmaceuticals, agrochemicals and polymers. A few examples of transition metal catalyzed cross coupling reactions involving C-N bond cleavage have been reported. A well-defined Ru …

Spectral Characterization Of Cytochromes Cyp11a1 (Aka P450scc) Active Site And Catalytic Intermediates, Qianhong Zhu

Dissertations (1934 -)

The Cytochromes P450 are monooxygenases which use dioxygen and endogenous reducing equivalents to generate highly reactive intermediates capable of performing several types of oxidative transformations, most commonly, hydroxylations via the so-called Compound I species. There are two main kinds of mammalian P450s: those functioning in drug metabolism and those that facilitate steroid biosynthesis. Steroidogenic P450s participating in the biosynthesis of steroid hormones are involved in a number of different pathways. CYP11A1, one of the steroidogenic P450s also known as P450scc, is the enzyme that converts cholesterol to pregnenolone through side chain cleavage between carbon 20 and 22. The overall process …

A Diastereoselective Approach To Bis-Spiroketal Synthesis Using Sulfinyl Iron(0) Tricarbonyl Diene Complexes, Peter A. Amadeo , '15

Senior Theses, Projects, and Awards

In the past, Paley lab has focused on the diastereoselective synthesis of spiroketals using sulfinyl iron(0) tricarbonyl diene complexes. This research has extended to study the formation of bis-spiroketals. As valuable natural products, bis-spiroketals are important synthesis targets, and the stereochemistry at the anomeric carbons is especially important. This research focuses on how sulfinyl iron(0) tricarbonyl diene complexes can help control the stereoselectivity of bis-spiroketal formation. The first attempt to make the desired bis-spiroketal involved preparmg a dihydroxy diketone precursor, which would undergo dehydrative cyclization. Unfortunately, there were various obstacles to preparing the precursor. Attempts to oxidize double bonds, remove …

Studies On Two Putative Ai-2 Receptors And The Transcriptional Repressor Lsrr, Jason Hua , '15

Senior Theses, Projects, and Awards

A diverse range of Gram-negative and Gram-positive bacteria rely on density-dependent, intercellular communication mediated by small signaling molecules called auto inducers to coordinate synchronous gene expression through a process termed quorum sensing. One family of auto inducers, consisting of spontaneously interconverting derivatives of (4S)-4,S-dihydroxy-2,3-pentanedione (DPD) and collectively referred to as Autoinducer- 2 (AI-2), is recognized in a wide variety of species by one of two canonical receptor proteins: LuxP, exclusive to the genus Vibrio, or an LsrB-like receptor. However, several studies have reported that two predicted ribose-binding proteins (RbsB), from Haemophilus injluenzae and Aggregatibacter actinomycetemcomitans, might behave as …

Development Of Extraction Methods For The Determination Of Epoxiconazole And Myclobutanil In Agar Media By Hplc, Martin T. Mathay , '15

Senior Theses, Projects, and Awards

Triazole fungicides represent the largest class within sterol demethylation inhibitors. While their intended use is to kill fungi, their accumulation to large concentrations is detrimental to non-targeted species. The primary goal of this work was to develop and optimise a method to quantify the amount of triazole fungicides from solid agar media. This investigation is divided into three parts: a method validation dedicated to authenticate the trueness of an HLPC method used in the determination and quantification of the triazole fungicides epoxiconazole and myclobutanil and two sections dedicated to utilizing the HPLC method to evaluate the efficiency of developed extraction …

Characterization Of Boron Hydride Compounds For Potential Use In Pressurized Water Nuclear Reactors, Alex Blake

Electronic Theses & Dissertations

The isotope 10B is a good neutron absorber with a thermal neutron absorption cross section of ~3800 barns. This quality has led to the use of boron as a neutron absorber in the nuclear power industry. In current practice, boric acid is commonly used as a neutron absorber in the water regime of active and passive safety systems. The boron hydride compounds in this study, namely Li2B10H10, Na2B10H10, K2B10H10, Li2B12H12, Na2B12H12, and K2B12H12, have been studied to assess their performance in situations where criticality control needs exceed normal control methods. In this type of situation these compounds have several advantages …

Volume 07, Rachel C. Lombardi, Ben Osterhout, Lindsay Graybill, Rebecca E. Dey, Skyler T. Carpenter, Emma Beckett, Jason Ware, Mollie Andrews, James Bates, Landon Cooper, Tiffani Jeffries, Maria Wheaton, Dallas Price, Laura Kahler, Sarah Charlton, Anna Bultrowicz, Emily Spittle, Erin Godwin, Eamon Brokenbrough

Incite: The Journal of Undergraduate Scholarship

Introduction from Interim Dean Dr. Jennifer Apperson

Spatial Analysis of Potential Risk Factors Associated with Addition of Atlantic Coast Pipeline Through Virginia by Rachel C. Lombardi

"Delicate Matters with No Speaking," "Hope and Nothing," "Mono Duality" by Ben Osterhout

"Connect" Graphic Design Senior Project by Lindsay Graybill

Phenolic Acids in Brassicaceae Plants: Ovipositional Stimulants or Deterrents for Cabbage White Butterfly, Pieris Rapae? by Rebecca E. Dey And Skyler T. Carpenter

"Abecedarian Cards" by Emma Beckett, Jason Ware, And Mollie Andrews

Helvetica: A Type Specimen Book by James Bates, Landon Cooper, Tiffani Jeffries, And Maria Wheaton

“Things Left Behind” by Dallas …

Kinetic Characterization Of B-Carotene In N-Hexane At Various Oxygen Concentrations, Katelyn Mary Arnold

Honors Theses

We have characterized the photo – degradation of ẞC in oxygenated and deoxygenated n–hexane solvent and in the solid phase using broadband (BB; λ ≥ 200 nm) and 313 nm filtered output of a 100 W Hg Arc lamp. Oxygen concentrations of 0, 10, 20, and 100% were used in the solution phase studies. ẞC(s) did not photo – degrade upon exposure to BB light under air atmospheres; the mass and appearance of the samples, TLC chromatograms, and the absorption spectra were all identical pre- and post-irradiation. In the solution phase, the order of the photo – degradation with respect …

Effects Of Cannabidiol On Contractions And Calcium Signaling In Rat Ventricular Myocytes, Ramez M. Ali, Lina T. Al Kury, Keun Hang Susan Yang, Anwar Qureshi, Mohanraj Rajesh, Sehamuddin Galadari, Yaroslav M. Shuba, Frank Christopher Howarth, Murat Oz

All Works

© 2015 Elsevier Ltd. Cannabidiol (CBD), a major nonpsychotropic cannabinoid found in Cannabis plant, has been shown to influence cardiovascular functions under various physiological and pathological conditions. In the present study, the effects of CBD on contractility and electrophysiological properties of rat ventricular myocytes were investigated. Video edge detection was used to measure myocyte shortening. Intracellular Ca2+ was measured in cells loaded with the Ca2+ sensitive fluorescent indicator fura-2 AM. Whole-cell patch clamp was used to measure action potential and Ca2+ currents. Radioligand binding was employed to study pharmacological characteristics of CBD binding. CBD (1μM) caused a significant decrease in …

Suspension Electrospinning Carbon Nanotube Doped Poly (Vinyl Alcohol) Nanowires, Ryan Hensleigh

Honors Theses

The synthesis, characterization and application of carbon nanotubes (CNTs) have received substantial attention in recent years, particularly in the field of polymer nanomaterial composites (PNCs). CNTs possess impressive thermal, electrical and mechanical properties, and PNCs incorporating them have shown multitude increases in these same properties with relatively low percolation thresholds [1]. Electrospinning is an effective and tunable materials synthesis platform for the manufacture of micro and nanofibers that has shown particular promise in the fields of carbon nanotube PNC processing due to the favorable isotropic alignment CNTs undergo due to the electrospinning process [2]. CNT alignment has been shown to …

Gas Phase Measurements Of Mono-Fluoro-Benzoic Acids And The Dimer Of 3-Fluoro-Benzoic Acid, Adam M. Daly, Spencer J. Carey, Aaron M. Pejlovas, Kexin Li, Lu Kang, Stephen G. Kukolich

Faculty Articles

The microwave spectrum of the mono-fluoro-benzoic acids, 2-fluoro-, 3-fluoro-, and 4-fluoro-benzoic acid have been measured in the frequency range of 4-14 GHz using a pulsed beam Fourier transform microwave spectrometer. Measured rotational transition lines were assigned and fit using a rigid rotor Hamiltonian. Assignments were made for 3 conformers of 2-fluorobenzoic acid, 2 conformers of 3-fluorobenzoic acid, and 1 conformer of 4-fluorobenzoic acid. Additionally, the gas phase homodimer of 3-fluorobenzoic acid was detected, and the spectra showed evidence of proton tunneling. Experimental rotational constants are A(0+) = 1151.8(5), B(0+) = 100.3(5), C(0+) = 87.64(3) MHz and A(0−) = 1152.2(5), B(0−) …

Aerosol Optical Hygroscopicity Measurements During The 2010 Cares Campaign, Dean B. Atkinson, James Gregory Radney, Janel Lum, Katheryn R. Kolesar, Daniel J. Cziczo, Mikhail Pekour, Qi Zhang, Ari Setyan, Alla Zelenyuk, Christopher D. Cappa

Chemistry Faculty Publications and Presentations

Measurements of the effect of water uptake on particulate light extinction or scattering made at two locations during the 2010 CARES study around Sacramento, CA are reported. The observed influence of water uptake, characterized through the dimensionless optical hygroscopicity parameter γ, is compared with calculations constrained by observed particle size distributions and size-dependent particle composition. A closure assessment has been carried out that allowed for determination of the average hygroscopic growth factors (GF) at 85% relative humidity and the dimensionless hygroscopicity parameter κ for oxygenated organic aerosol (OA) and for supermicron particles, yielding κ = 0.1–0.15 and 0.9–1.0, respectively. The …

Identifying Medication Targets For Psychostimulant Addiction: Unraveling The Dopamine D3 Receptor Hypothesis, Thomas M. Keck, William S. John, Paul W. Czoty, Michael A. Nader, Amy Hauck Newman

College of Science & Mathematics Departmental Research

The dopamine D3 receptor (D3R) is a target for developing medications to treat substance use disorders. D3R-selective compounds with high affinity and varying efficacies have been discovered, providing critical research tools for cell-based studies that have been translated to in vivo models of drug abuse. D3R antagonists and partial agonists have shown especially promising results in rodent models of relapse-like behavior, including stress-, drug-, and cue-induced reinstatement of drug seeking. However, to date, translation to human studies has been limited. Herein, we present an overview and illustrate some of the pitfalls and challenges of developing novel D3R-selective compounds toward clinical …

Immunoassays Of Potential Cancer Biomarkers In Microfluidic Devices, Jayson Virola Pagaduan

Theses and Dissertations

Laboratory test results are important in making decisions regarding a patient's diagnosis and response to treatment. These tests often measure the biomarkers found in biological fluids such blood, urine, and saliva. Immunoassay is one type of laboratory test used to measure the level of biomarkers using specific antibodies. Microfluidics offer several advantages such as speed, small sample volume requirement, portability, integration, and automation. These advantages are motivating to develop microfluidic platforms of conventional laboratory tests. I have fabricated polymer microfluidic devices and developed immunoassays on-chip for potential cancer markers. Silicon template devices were fabricated using standard photolithographic techniques. The template …

Polycyclic Aromatic Hydrocarbon Determination In Liver Of Menhaden Exposed To The Deep Water Horizon Oil Spill, Rebecca Hawke

Seton Hall University Dissertations and Theses (ETDs)

The April 2010 BP® oil spill has caused great concern for ecological impacts in the Gulf of Mexico. Crude oil contains polycyclic aromatic hydrocarbon (PAHs) and oil spills increase the exposure of aquatic organisms to this class of chemicals. The overall detrimental health effects associated with PAH exposure depend on the exposure period, the concentration of PAHs, and the toxicity of the PAHs in the mixture. Brevoortia tyrannus and Brevoortia patronus are filter feeding fish commonly known as menhaden and account for over 40% of the commercial industry fisheries catch. As primary consumers, they are a major link in the …

Aldehydic C-H Amination Reactions Via Co(Ii)-Based Metalloradical Catalysis And Construction Of Novel Chiral Meso-Amidoporphyrin Ligands, Christopher Lee Lizardi

USF Tampa Graduate Theses and Dissertations

Medium-sized organic ring synthesis poses a seemingly insurmountable challenge, and because of this it is a field under immense investigation. Heterocyclic containing medium-sized rings are common structural motifs in nature, which has caused researchers to investigate their potential biological activity and properties as materials. This research focused on the grand challenge of medium-sized heterocyclic ring synthesis, providing the synthesis community with new tools to generate these highly evasive products, while elucidating energetic and geometric properties of one of Nature's least understood organic ring systems.

Cobalt(II)-Amidoporphyrins, [Co(D₂-Por)], are an emerging class of metalloradical catalysts (MRC) which can facilitate …

Helicobacter Pylori Flha Binds The Sensor Kinase And Flagellar Gene Regulatory Protein Flgs With High Affinity, Jennifer Tsang, Takanori Hirano, Timothy R. Hoover, Jonathan L. Mcmurry

Faculty Articles

Flagellar biogenesis is a complex process that involves multiple checkpoints to coordinate transcription of flagellar genes with the assembly of the flagellum. In Helicobacter pylori, transcription of the genes needed in the middle stage of flagellar biogenesis is governed by RpoN and the two-component system consisting of the histidine kinase FlgS and response regulator FlgR. In response to an unknown signal, FlgS autophosphorylates and transfers the phosphate to FlgR, initiating transcription from RpoNdependent promoters. In the present study, export apparatus protein FlhA was examined as a potential signal protein. Deletion of its N-terminal cytoplasmic sequence dramatically decreased expression of two …

Determination Of Abraham Model Solute Descriptors For The Monomeric And Dimeric Forms Of Trans-Cinnamic Acid Using Measured Solubilities From The Open Notebook Science Challenge, Andrew Lang, Jean-Claude Bradley, Michael H. Abraham, William E. Acree Jr., Samantha N. Beck, David A. Bulger, Elizabeth A. Clark

College of Science and Engineering Faculty Research and Scholarship

Background: Calculating Abraham descriptors from solubility values requires that the solute have the same form when dissolved in all solvents. However, carboxylic acids can form dimers when dissolved in non-polar solvents. For such compounds Abraham descriptors can be calculated for both the monomeric and dimeric forms by treating the polar and non-polar systems separately. We illustrate the method of how this can be done by calculating the Abraham descriptors for both the monomeric and dimeric forms of trans-cinnamic acid, the first time that descriptors for a carboxylic acid dimer have been obtained. Results: Abraham descriptors were calculated for the monomeric …

Violacein Induces P44/42 Mitogen-Activated Protein Kinase‑Mediated Solid Tumor Cell Death And Inhibits Tumor Cell Migration, Toral Mehta, Koen P. Vercruysse, Terrance Johnson, Anthony Okechukwu Ejiofor, Elbert Myles, Quincy A. Quick

Chemistry Faculty Research

Microbial secondary metabolites have emerged as alternative novel drugs for the treatment of human cancers. Violacein, a purple pigment produced by Chromobacterium violaceum, was investigated in the present study for its anti‑tumor properties in tumor cell lines. Clinically applicable concentrations of violacein were demonstrated to inhibit the proliferative capacity of tumor cell lines according to a crystal violet proliferation assay. The underlying mechanism was the promotion of apoptotic cell death, as indicated by poly(ADP ribose) polymerase cleavage and p44/42 mitogen‑activated protein kinase signaling determined by western blot analysis. Collectively, this provided mechanistic evidence that violacein elicits extracellular-signal regulated kinase‑induced apoptosis …

Development Of An Optical Method For The Detection Of Homocysteine As A Disease Biomarker Using Fluorescein-Aldehydes, Aabha Barve

Dissertations and Theses

Homocysteine is a natural occurring aminothiol. It is an intermediate product in the metabolism of methionine. Methionine is an essential amino acid required for protein synthesis. Metabolic irregularities disrupt homocysteine levels in plasma. Elevated homocysteine levels are directly linked to folate and cobalamin (vitamin B12) deficiencies, and are an independent risk factor for cardiovascular diseases. High homocysteine levels have also been associated with Alzheimer's, osteoporosis, renal failure, cancer, birth defects and pregnancy complications. The association of elevated homocysteine levels with cardiovascular disease and other diseases has generated great interest in the detection of homocysteine.

An optical method for the detection …

Byu Meg Report, Emily Bates

Journal of Undergraduate Research

The academic objectives were met by the proposal. Students learned to sequence DNA and to interpret the sequence to know if there was a rare genetic change occurring in the sequence that they interpreted. Students learned to write academic abstracts, introductions, results, and conclusions in the format of an academic journal. Furthermore, together the students determined that the genetic change in a family with an inherited syndrome of birth defects was not one that had previously been identified or described.

Mentoring Undergraduates Via Organic Synthesis, Steven L. Castle

Journal of Undergraduate Research

This report summarizes the results that were generated under the auspices of the mentoring environment in my laboratory from January 2013 to the present. A total of eight undergraduates participated in the mentoring environment during this period.

Parmodulins Inhibit Thrombus Formation Without Inducing Endothelial Injury Caused By Vorapaxar, Omozuanvbo Aisiku, Christian G. Peters, Karen De Ceunynck, Chandra C. Ghosh, James R. Dilks, Susanna F. Fustolo-Gunnink, Mingdong Huang, Chris Dockendorff, Samir M. Parikh, Robert Flaumenhaft

Chemistry Faculty Research and Publications

Protease-activated receptor-1 (PAR1) couples the coagulation cascade to platelet activation during myocardial infarction and to endothelial inflammation during sepsis. This receptor demonstrates marked signaling bias. Its activation by thrombin stimulates prothrombotic and proinflammatory signaling, whereas its activation by activated protein C (APC) stimulates cytoprotective and antiinflammatory signaling. A challenge in developing PAR1-targeted therapies is to inhibit detrimental signaling while sparing beneficial pathways. We now characterize a novel class of structurally unrelated small-molecule PAR1 antagonists, termed parmodulins, and compare the activity of these compounds to previously characterized compounds that act at the PAR1 ligand–binding site. We find that parmodulins target …

Sequence-Specific, Nanomolar Peptide Binding Via Cucurbit[8]Uril-Induced Folding And Inclusion Of Neighboring Side Chains, Lauren C. Smith, David G. Leach, Brittney E. Blaylock, Omar A. Ali, Adam R. Urbach

Chemistry Faculty Research

This paper describes the molecular recognition of the tripeptide Tyr-Leu-Ala by the synthetic receptor cucurbit[8]uril (Q8) in aqueous buffer with nanomolar affinity and exceptional specificity. This combination of characteristics, which also applies to antibodies, is desirable for applications in biochemistry and biotechnology but has eluded supramolecular chemists for decades. Building on prior knowledge that Q8 binds to peptides with N-terminal aromatic residues, a library screen of 105 peptides was designed to test the effects of residues adjacent to N-terminal Trp, Phe, or Tyr. The screen used tetramethylbenzobis(imidazolium) (MBBI) as a fluorescent indicator and resulted in the unexpected discovery that MBBI …

Facile Methods For The Analysis Of Lysophosphatidic Acids In Human Plasma, Jialu Wang

Dissertations and Theses

Lysophosphatidic acid (LPA) influences many physiological processes, such as brain and vascular development. It is associated with several diseases including ovarian cancer, breast cancer, prostate cancer, colorectal cancer, hepatocellular carcinoma, multiple myeloma atherosclerotic diseases, cardiovascular diseases, pulmonary inflammatory diseases and renal diseases. LPA plasma and serum levels have been reported to be important values in diagnosing ovarian cancer and other diseases. However, the extraction and quantification of LPA in plasma are very challenging because of the low physiological concentration and similar structures of LPA to other phospholipids. Many previous studies have not described the separation of LPA from other phospholipids, …

Photophysics Of Organic Semiconductors: From Ensemble To The Single-Molecule Level, Rebecca Grollman, Whitney E. B. Shepherd, Alexander Robertson, Keshab R. Paudel, John E. Anthony, Oksana Ostroverkhova

Chemistry Faculty Publications

We present photophysical properties of functionalized anthradithiophene (ADT) and pentacene (Pn) derivatives, as well as charge and energy transfer properties of donor-acceptor (D/A) pairs of these derivatives. All molecules studied were fluorescent and photostable enough to be imaged on the single-molecule level in a variety of polymeric and in a functionalized benzothiophene (BTBTB) crystalline host using room-temperature wide- field epifluorescence microscopy. Flexibility of functionalization of both guest (ADT, Pn) and host (BTBTB or polymer) molecules can be used for systematic studies of nanoscale morphology and photophysics of D/A organic semiconductor bulk heterojunctions, as well as in applications relying on FRET, …