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Isoquinoline-Substituted Triazole And Pyran Derivatives: Synthesis And Computational Studies, Duygu Yeni̇dede, Selçuk Gümüş, Ayşegül Gümüş Jan 2016

Isoquinoline-Substituted Triazole And Pyran Derivatives: Synthesis And Computational Studies, Duygu Yeni̇dede, Selçuk Gümüş, Ayşegül Gümüş

Turkish Journal of Chemistry

The one-pot synthesis of novel 1,4-disubstituted 1,2,3-triazoles from isoquinoline-substituted homopropargyl alcohol backbone is described (42%-88% yields). A ring closing metathesis reaction and an intramolecular Pauson-Khand reaction of enyne system derived from a homopropargyl alcohol backbone to afford the corresponding isoquinoline-substituted dihydropyran and cyclopentenone-pyran, respectively, are also described (54% and 78% yields). Information about the structural, electronic, and physico-chemical properties of the novel compounds, obtained by density functional theory application, is also reported.


Characterization Of An Al$^{3+}$-Selective Fluorescent Probe Based On A Benzoyl Hydrazine Derivative And Its Application In Cell Imaging, Yuxiang Ji, Chunwei Yu, Shaobai Wen, Jun Zhang Jan 2016

Characterization Of An Al$^{3+}$-Selective Fluorescent Probe Based On A Benzoyl Hydrazine Derivative And Its Application In Cell Imaging, Yuxiang Ji, Chunwei Yu, Shaobai Wen, Jun Zhang

Turkish Journal of Chemistry

A fluorescent probe based on benzoyl hydrazine was synthesized and characterized as an Al$^{3+}$-selective fluorescent probe. This probe showed good selectivity towards Al$^{3+\, }$compared to other common ions. Under optimized experimental conditions, the probe exhibited a linear dynamic response for Al$^{3+}$ from 5.0 $\times $ 10$^{-7}$ to 4.5 $\times $ 10$^{-6}$ M with a detection limit of 1.3 $\times $ 10$^{-7}$ M in ethanol-water solution (9:1, v:v, pH 6.8, 20 mM HEPES). Furthermore, it was used for imaging of Al$^{3+}$ in living cells with satisfying results.


Newly Synthesized Furanoside-Based Nhc Ligands For The Arylation Of Aldehydes, Serpi̇l Deni̇zalti, Fatma Çeti̇n Telli̇, Seli̇n Yildiran, Azi̇ze Yeşi̇m Salman, Beki̇r Çeti̇nkaya Jan 2016

Newly Synthesized Furanoside-Based Nhc Ligands For The Arylation Of Aldehydes, Serpi̇l Deni̇zalti, Fatma Çeti̇n Telli̇, Seli̇n Yildiran, Azi̇ze Yeşi̇m Salman, Beki̇r Çeti̇nkaya

Turkish Journal of Chemistry

New furanoside-based NHC precursor salts (2) were synthesized using amino alcohols from the chloralose derivatives of glucose (a), galactose (b), and mannose (c). The novel compounds were fully characterized by $^{1}$H NMR, $^{13}$C NMR, and elemental analyses. The catalytic activities of these salts were tested in the arylation of aldehydes as catalysts that were generated in situ from [RhCl(COD)]$_{2}$. In addition, 2a was converted to the rhodium complex 3a in order to compare the results obtained in situ. The newly synthesized compounds were very efficient in terms of yield; nevertheless they did not exhibit a chiral induction.


Ag(I) Complexes Of Benzimidazol-2-Ylidene Ligands: A Study Of Catalytic Efficiency Towards Three-Component Coupling Reactions, Rafet Kilinçarslan, Nai̇m Sadiç, Beki̇r Çeti̇nkaya Jan 2016

Ag(I) Complexes Of Benzimidazol-2-Ylidene Ligands: A Study Of Catalytic Efficiency Towards Three-Component Coupling Reactions, Rafet Kilinçarslan, Nai̇m Sadiç, Beki̇r Çeti̇nkaya

Turkish Journal of Chemistry

The $N$-heterocyclic carbene (NHC)--Ag(I) complexes 3a-c were synthesized from benzimidazolium chlorides (2a-c = NHC.HCl), incorporating benzyl derivatives and a 2-methoxyethyl group (a: $^{3}$N = 2,4,6-trimethylbenzyl; b: $^{3}$N = 2,3,5,6-tetramethylbenzyl; c: $^{3}$N = pentamethylbenzyl). The compounds were characterized by spectroscopic and elemental analyses. The synthesized NHC-Ag(I) complexes (3a-c) were tested as catalysts for the catalytic three-component coupling reaction of aldehyde, alkyne, and amine to propargylamines in various solvents. All complexes were active catalysts for catalytic three-component coupling reactions with good yields under neat and mild conditions (after 4 h, yields of up to 94%).


Mn-Doped Zns Quantum Dots As A Room-Temperature Phosphorescent Probe For Analysis Of Glutamic Acid In Foodstuffs, Hayri̇ye Eda Şatana Kara, Burak Demi̇rhan, Buket Er Demi̇rhan Jan 2016

Mn-Doped Zns Quantum Dots As A Room-Temperature Phosphorescent Probe For Analysis Of Glutamic Acid In Foodstuffs, Hayri̇ye Eda Şatana Kara, Burak Demi̇rhan, Buket Er Demi̇rhan

Turkish Journal of Chemistry

L-cysteine-capped Mn-doped ZnS quantum dots (QDs) were used for the determination of glutamic acid in foodstuffs. This method is based on measurement of the quenching of the phosphorescence intensity of the QDs after interacting with glutamic acid. A linear response was observed from 50 to 500 ng mL$^{-1}$ glutamic acid with a limit of detection of 6.79 ng mL$^{-1}$. Room temperature phosphorescence (RTP) intensity of the QDs was quenched rapidly upon the addition of the quencher and the reaction reached equilibrium within 2 min. The quenching mechanism of phosphorescence of Mn-doped ZnS QDs by glutamic acid is dynamic and the …


Production, Purification, And Characterization Of A Thermo-Alkali Stable And Metal-Tolerant Carboxymethylcellulase From Newly Isolated Bacillus Methylotrophicus Y37, Yonca Duman, Yonca Yüzügüllü Karakuş, Arzu Sertel, Fi̇kri̇ye Polat Jan 2016

Production, Purification, And Characterization Of A Thermo-Alkali Stable And Metal-Tolerant Carboxymethylcellulase From Newly Isolated Bacillus Methylotrophicus Y37, Yonca Duman, Yonca Yüzügüllü Karakuş, Arzu Sertel, Fi̇kri̇ye Polat

Turkish Journal of Chemistry

A carboxymethylcellulose (CMC)-degrading bacterium was isolated from soil, identified as Bacillus methylotrophicus according to the physiological properties and analyses of 16S rRNA and a partial sequence of the gyrase A (gyrA) gene, and named as B. methylotrophicus Y37. The CMCase enzyme was purified to homogeneity by 20.4-fold with 21.73% recovery using single-step hydrophobic interaction chromatography and biochemically characterized. CMCase showed a molecular weight of approximately 50 kDa as determined by SDS-PAGE. The activity profile of the CMCase enzyme exhibited optimum activity at 45 $^{\circ}$C and pH 5.0. The activity was highly stable at alkaline pH levels. More than 90% of …


Speciation Of Trace Metals And Metalloids By Solid Phase Extraction With Spectrometric Detection: A Critical Review, Ali̇ Rehber Türker Jan 2016

Speciation Of Trace Metals And Metalloids By Solid Phase Extraction With Spectrometric Detection: A Critical Review, Ali̇ Rehber Türker

Turkish Journal of Chemistry

Considerable interest is continuing to be shown in the speciation of metals, metalloids, and organometals due to the dependence of their toxicity and mobility on their chemical form. This review focuses on the speciation analysis of metals, metalloids, and organometals by solid phase extraction before spectrometric detection, and all aspects of analytical speciation such as determination of oxidation states and organometallic compounds. Some applications of speciation of metals and metalloids are also presented and discussed in this review. Fractionation, which is used sometimes as speciation, and chromatographic detection are not discussed. This review covers approximately the last four years (2012-March …


Synthesis, ($E)$/($Z)$-Isomerization, And Dna Binding, Antibacterial, And Antifungal Activities Of Novel Oximes And $O$-Substituted Oxime Ethers, Hati̇ce Başpinar Küçük, Ayşe Sergüzel Yusufoğlu, Leyla Açik, Betül Aydin, Leyla Arslan Jan 2016

Synthesis, ($E)$/($Z)$-Isomerization, And Dna Binding, Antibacterial, And Antifungal Activities Of Novel Oximes And $O$-Substituted Oxime Ethers, Hati̇ce Başpinar Küçük, Ayşe Sergüzel Yusufoğlu, Leyla Açik, Betül Aydin, Leyla Arslan

Turkish Journal of Chemistry

A series of novel positional oximes (2a-2d), $O$-methyl oxime ethers (3a-3d), and $O$-benzyl oxime ethers (4a-4d) were synthesized in high yields starting from their corresponding methyl 3-, 4-, 6-, and 13-keto tetradecanoates. The synthesized compounds were characterized by $^{1}$H NMR, $^{13}$C NMR, FT-IR, mass, and elemental analyses for their structures and $(E)$/$(Z)$ isomerizations. Their DNA binding abilities were investigated in vitro by agarose gel electrophoresis. The antibacterial and antifungal activities were tested also in vitro against eleven bacterial strains and three fungal strains. The relationship between the structure and the mentioned biological activities was discussed. Compound 2a showed good antibacterial …


Chromate Surface-Imprinted Silica Gel Sorbent For Speciation Of Cr In Surface Waters, Mariya Mitreva, Ivanka Dakova, Tanya Yordanova, Irina Karadjova Jan 2016

Chromate Surface-Imprinted Silica Gel Sorbent For Speciation Of Cr In Surface Waters, Mariya Mitreva, Ivanka Dakova, Tanya Yordanova, Irina Karadjova

Turkish Journal of Chemistry

This study is focused on the synthesis of chromate anion imprinted sorbent supported on silica gel for nonchromatographic Cr speciation in surface waters. The preparation procedure is based on grafting of 3-methyl-1-trimethoxysilylpropylimidazolium, preliminarily coordinated to CrO$_{4}^{2-}$ as a template ion, onto the surface of silica gel. Sorption and desorption characteristics of surface-imprinted sorbent toward Cr(III) and Cr(VI) were examined by batch solid-phase extraction. An excellent separation of Cr(VI), selectively retained on the sorbent, from Cr(III) remained in the solution, was achieved at pH 2-3 for 20 min. A freshly prepared mixture of ascorbic acid and nitric acid was selected as …


Remediation Of Cr(Vi) Via Combined Self-Reduction And Adsorption Bychemically Modified Carbon Sorbents, Mohamed E. Mahmoud, Amr. A. Yakout, Asmaa M. Halbas, Maher M. Osman Jan 2016

Remediation Of Cr(Vi) Via Combined Self-Reduction And Adsorption Bychemically Modified Carbon Sorbents, Mohamed E. Mahmoud, Amr. A. Yakout, Asmaa M. Halbas, Maher M. Osman

Turkish Journal of Chemistry

Hexavalent chromium, Cr(VI), is a highly toxic species, while trivalent chromium, Cr(III), is an essential trace element for humans and other organisms. In the present work, a simple, rapid, and efficient procedure for water treatment of Cr(VI) is described. Active carbon (AC) was chemically treated with HCl and NaOH for the formation of surface modified Acidic-AC and Basic-AC sorbents, respectively. In addition, AC sorbent was treated with HNO$_{3}$ as an oxidizing agent and sodium sulfite as a reducing agent for the formation of Ox-AC and Rd-AC sorbents, respectively. The modified AC sorbents were tested to identify their potential applications in …


An Application Of Coacervate-Based Extraction For The Separation And Preconcentration Of Cadmium, Lead, And Nickel Ions Prior To Their Determination By Flame Atomic Absorption Spectrometry In Various Water Samples, Anies Awad Satti, İlknur Durukan Temuge, Sema Bektaş, Çi̇ğdem Arpa Şahi̇n Jan 2016

An Application Of Coacervate-Based Extraction For The Separation And Preconcentration Of Cadmium, Lead, And Nickel Ions Prior To Their Determination By Flame Atomic Absorption Spectrometry In Various Water Samples, Anies Awad Satti, İlknur Durukan Temuge, Sema Bektaş, Çi̇ğdem Arpa Şahi̇n

Turkish Journal of Chemistry

Cloud point extraction (CPE), which is the most popular coacervate-based extraction method, was utilized for the separation and preconcentration of trace amounts of cadmium, lead, and nickel. Quinalizarin was used as complexing agent and Triton X-114 was used as surfactant. After extraction, analyte ions were determined by flame atomic absorption spectrometry. The detection limits (3$s)$ of 1.8 $\mu $g L$^{-1}$ for Cd(II), 3.2 $\mu $g L$^{-1}$ for Pb(II), and 2.8 $\mu $g L$^{-1}$ for Ni(II) were obtained using 50 mL of solutions. The relative standard deviation was calculated as 4.3% for 10 $\mu $g L$^{-1}$ Cd(II), 4.9% for 50 $\mu …


Ionic Liquid Based Microextraction Combined With Derivatization For Efficient Enrichment/Determination Of Asulam And Sulfide, Habibollah Eskandari, Mahnaz Shahbazi-Raz Jan 2016

Ionic Liquid Based Microextraction Combined With Derivatization For Efficient Enrichment/Determination Of Asulam And Sulfide, Habibollah Eskandari, Mahnaz Shahbazi-Raz

Turkish Journal of Chemistry

This study reports 2 new simple derivatization-based dispersive liquid-liquid microextraction (DLLME) methods for spectrophotometric ultratrace determination of asulam and sulfide. 1-Naphthol (in the presence of nitrite) and N,N-diethyl-p-phenylenediamine (in the presence of Fe(III)) were used to derivatize asulam and sulfide, respectively. In the enrichment methods, the formed derivatives were preconcentrated into microdroplets of the in situ formed water insoluble ionic liquid (IL), 1-hexyl-3-methylimidazolium hexafluorophosphate. Monitoring was performed at 526 nm for asulam and at 664 nm for sulfide, after dissolution of the IL-rich phases into the basic ethanolic solution and ethanol for asulam and sulfide, respectively. Beer's law was obeyed …


Synthetic Protocols On 6$H$-Benzo[$C$]Chromen-6-Ones: A Review, Ofentse Mazimba Jan 2016

Synthetic Protocols On 6$H$-Benzo[$C$]Chromen-6-Ones: A Review, Ofentse Mazimba

Turkish Journal of Chemistry

6$H$-Benzo[$c$]chromen-6-ones serve as core structures of secondary metabolites and are of considerable pharmacological importance. Natural sources produce limited quantities, hence the need for synthetic procedures for 6$H$-benzo[$c$]chromen-6-ones, which are herein reviewed. The literature describes protocols such as the Suzuki coupling reactions for the synthesis of biaryl, which then undergoes lactonization, reactions of 3-formylcoumarin (chromenones) with 1,3-bis(silylenol ethers), radical mediated cyclization of arylbenzoates, metal or base catalyzed cyclization of phenyl-2-halobenzoates and 2-halobenzyloxyphenols, and benzoic acid coupling with benzoquinone using electrophilic metal-based catalyst. The efficient and simple procedures are those involving the reactions of Michael acceptor (chromenones and chalcones) with 1,3- and …


The Study Of Nf-Κb Peptide Mimics And How Proteins Bind Dna, Allee M. Murray Jan 2016

The Study Of Nf-Κb Peptide Mimics And How Proteins Bind Dna, Allee M. Murray

Honors College Theses

The protein complex nuclear factor kappa B (NF-κB) is widely considered to be one of the most influential transcription factors when studying cellular functions. Peptide mimics of NF-κB aim to inhibit DNA binding in order to displace the natural transcription factor, therefore inhibiting transcription and translation. In theory, NF-κB is not the problem; the real problem lies in directing the synthesis and expression of harmful proteins. In conjunction with this, the project aims to study NF-κB and its structure and function to determine what criteria are important for the binding of DNA in order to design a peptide that comes …


Crystal Structure Of (E)-2-[(2- Bromo-3-Pyridyl)Methylidene]-6-Methoxy-3,4-Dihydronaphthalen-1-One And 3-[(E)-(6- Methoxy-3,4-Dihydronaphth-2-Oylidene)Methyl]-1h-Pyridin-2-One, Sarah K. Zingales, Morgan E. Moore, Andrew D. Goetz, Clifford W. Padgett Jan 2016

Crystal Structure Of (E)-2-[(2- Bromo-3-Pyridyl)Methylidene]-6-Methoxy-3,4-Dihydronaphthalen-1-One And 3-[(E)-(6- Methoxy-3,4-Dihydronaphth-2-Oylidene)Methyl]-1h-Pyridin-2-One, Sarah K. Zingales, Morgan E. Moore, Andrew D. Goetz, Clifford W. Padgett

Chemistry: Faculty Publications (1990-2023)

The title compounds C17H14BrNO2, (I), and C17H15NO3, (II), were obtained from the reaction of 6-meth­oxy-3,4-di­hydro-2H-naphthalen-1-one and 2-bromo­nicotinaldehyde in ethanol. Compound (I) was the expected product and compound (II) was the oxidation product from air exposure. In the crystal structure of compound (I), there are no short contacts or hydrogen bonds. The structure does display [pi]-[pi] inter­actions between adjacent benzene rings and adjacent pyridyl rings. Compound (II) contains two independent mol­ecules, A and B, in the asymmetric unit; both are non-planar, the dihedral angles between the meth­oxy­benzene and 1H-pyridin-2-one mean planes being 35.07 (9)° in A and 35.28 (9)°in B. In …


Effects Of Citric Acid Coated And Uncoated Cerium Oxide Nanoparticles In Tomato (Solanum Lycopersicum) Plants, Ana Cecilia Barrios Jan 2016

Effects Of Citric Acid Coated And Uncoated Cerium Oxide Nanoparticles In Tomato (Solanum Lycopersicum) Plants, Ana Cecilia Barrios

Open Access Theses & Dissertations

This research was performed to examine the physiological and biochemical effects of bare (nCeO2) and citric acid coated (nCeO2+CA) cerium oxide nanoparticles in tomato (Solanum lycopersicum). Plants were germinated and grown to full maturity in soil amended with 0-500 mg/kg and periodically analyzed using ICP-OES/MS and other spectroscopic and biochemical techniques. Although Ce in tissues increased as the external nCeO2 increased, there were no visible signs of toxicity. In mature plants, nCeO2 induced developmental changes and altered nutritional quality (essential elements) in fruits. On the other hand, nCeO2+CA affected fruit carbohydrate composition (sugars and starch). This study gives insights on …


Novel Cell Penetrating Peptide-Adaptors Effect Intracellular Delivery And Endosomal Escape Of Protein Cargos, John C. Salerno, Verra M. Ngwa, Scott J. Nowak, Carol A. Chrestensen, Allison N. Healey, Jonathan L. Mcmurry Jan 2016

Novel Cell Penetrating Peptide-Adaptors Effect Intracellular Delivery And Endosomal Escape Of Protein Cargos, John C. Salerno, Verra M. Ngwa, Scott J. Nowak, Carol A. Chrestensen, Allison N. Healey, Jonathan L. Mcmurry

Faculty Articles

The use of cell penetrating peptides (CPPs) as biomolecular delivery vehicles holds great promise for therapeutic and other applications, but development has been stymied by poor delivery and lack of endosomal escape. We have developed a CPP-adaptor system capable of efficient intracellular delivery and endosomal escape of user-defined protein cargos. The cell penetrating sequence of HIV transactivator of transcription was fused to calmodulin, which binds with subnanomolar affinity to proteins containing a calmodulin binding site. Our strategy has tremendous advantage over prior CPP technologies because it utilizes high affinity noncovalent, but reversible coupling between CPP and cargo. Three different cargo …


Two-Photon Excitation Based Photochemistry And Neural Imaging, Kevin Andrew Hatch Jan 2016

Two-Photon Excitation Based Photochemistry And Neural Imaging, Kevin Andrew Hatch

Open Access Theses & Dissertations

Two-photon microscopy is a fluorescence imaging technique which provides distinct advantages in three-dimensional cellular and molecular imaging. The benefits of this technology may extend beyond imaging capabilities through exploitation of the quantum processes responsible for fluorescent events. This study utilized a two-photon microscope to investigate a synthetic photoreactive collagen peptidomimetic, which may serve as a potential material for tissue engineering using the techniques of two-photon photolysis and two-photon polymerization. The combination of these techniques could potentially be used to produce a scaffold for the vascularization of engineered three-dimensional tissues in vitro to address the current limitations of tissue engineering. Additionally, …


Improving The Engineering Properties Of Pla For 3d Printing And Beyond, Carmen R. Rocha Jan 2016

Improving The Engineering Properties Of Pla For 3d Printing And Beyond, Carmen R. Rocha

Open Access Theses & Dissertations

Additive manufacturing (AM), now more commonly known as 3D printing, has been classified as efficient, fast, and practical in the prototyping sector of product development. In the work presented here, we will use one of the AM techniques known as Material extrusion 3D printing (ME3DP), which has all the advantages of AM. However, one of the biggest challenges facing ME3DP technologies is the limitation of the range of materials used by this technique. Acrylonitrile butadiene styrene (ABS) and poly-lactic acid (PLA) are currently the most common thermoplastics materials used in ME3DP because of their ability to melt and be reprocessed. …


Synthesis Of Neoglycoproteins/Neoglycopeptides And Their Immunological Evaluation In The Context Of Chagas Disease, Nathaniel Scott Schocker Jan 2016

Synthesis Of Neoglycoproteins/Neoglycopeptides And Their Immunological Evaluation In The Context Of Chagas Disease, Nathaniel Scott Schocker

Open Access Theses & Dissertations

The protozoan parasite, Trypanosoma cruzi, the etiologic agent of Chagas disease (ChD), has a cell surface covered by immunogenic glycoconjugates. A synthetic glycoarray containing non-reducing α-galactopyranosyl moieties related to mucin O-glycans of the parasite T. cruzi was evaluated by a chemiluminescent enzyme-linked immunosorbent assay (CL-ELISA) with sera from patients with chronic ChD, revealing the disaccharide Galα(1,3)Galβ as the immunodominant glycotope (Chapter 2). This disaccharide comprises the two terminal sugars of the known immunodominant glycotope Galα(1,3)Galβ(1,4)GlcNAcα, which is expressed on glycosylphosphatidylinositol-anchored mucins of the infective trypomastigote stage of T. cruzi and triggers high levels of protective anti-α-Gal antibodies (Abs) in infected …


Modulation Of The Physiological And Biochemical Effects Of Copper Nanoparticles In Kidney Beans (Phaseouls Vulgaris) Treated By Kinetin, Suzanne Annette Apodaca Jan 2016

Modulation Of The Physiological And Biochemical Effects Of Copper Nanoparticles In Kidney Beans (Phaseouls Vulgaris) Treated By Kinetin, Suzanne Annette Apodaca

Open Access Theses & Dissertations

It is imperative to not only understand the impact of engineered nanomaterials (ENMs) in edible plants, but also the interactions they have with various additives used in agriculture. In this study, kidney bean plants were grown in potting soil treated with nano copper (nCu), bulk copper (bCu), and copper chloride (CuCl2) at concentrations of 0, 50, and 100 mg/kg for 55 and 90 days. At 15 days of growth, 0, 10, and 100 μm of kinetin (KN) were applied to plants. Plant tissue samples were harvested at 55 days and seeds were reaped at 90 days. Physiological and biochemical parameters …


Synthesis And Characterization Of Uranyl Dipyrrin Complexes For Environmental Applications, Duer Bolotaulo Bolotaulo Jan 2016

Synthesis And Characterization Of Uranyl Dipyrrin Complexes For Environmental Applications, Duer Bolotaulo Bolotaulo

Open Access Theses & Dissertations

Persistent organic pollutants (POPs) are toxic chemicals that adversely affect the health of human populations as well as the environment. The need to develop remediation methods and materials as well as understand the mechanisms in which they can degrade POPs is necessary. Furthermore, heterogeneous phase metal based catalysts in place today do not fully understand the chemistry underlying degradation processes. The proposed research seeks to synthesize and characterize uranyl dipyrrin complexes to assess and understand the reactivity of uranyl dipyrrins with pollutants. Photophysical and electrochemical techniques will be used to characterize and determine the viability of utilizing the uranyl complexes …


The Characterization Of A Recombinant Virophage Integrase, Martin Christopher Chacon Jan 2016

The Characterization Of A Recombinant Virophage Integrase, Martin Christopher Chacon

Open Access Theses & Dissertations

Virophages are satellite-like dsDNA viruses that parasitize giant viruses of the family Mimiviridae. Mavirus is the second virophage discovered that associates with its host virus Cafeteria roenbergensis Virus (CroV). When co-infecting their common host cell Cafeteria roenbergensis, a marine zooplankton that is widely spread throughout the oceans, mavirus will inhibit CroV's replication. In addition, mavirus was shown to share high similarities to the Maverick/Polinton eukaryotic DNA transposons. A coding sequence in mavirus genome (MV02) reveals high homology to retroviral integrases such as those found in HIVs. The putative integrase MV02 is predicted to integrate mavirus DNA into the host genome. …


Removal Of Endocrine Disrupting Compounds From Water And Wastewater Using Ecofriendly Materials, Alma Lili Loya Posada Jan 2016

Removal Of Endocrine Disrupting Compounds From Water And Wastewater Using Ecofriendly Materials, Alma Lili Loya Posada

Open Access Theses & Dissertations

Endocrine disrupting chemicals (EDCs) are compounds considered pollutants of emerging concern. The United States Environmental Protection Agency (USEPA) defines emerging pollutants as new chemicals without regulatory status and with an impact on the environment and human health that is poorly understood. Bisphenol A (BPA) has been considered an EDC and found to be ubiquitous in the environment because of its presence in a multitude of products including food and beverage packaging, flame retardants, adhesives, building materials, electronic components, and paper coatings Currently, BPA is not regulated by the federal government in the US and waste water treatment plants are not …


Synthesis, Characterization, And Functional Evaluation Of Nanocomposites For Water Purification, Julio Eduardo Padilla Jan 2016

Synthesis, Characterization, And Functional Evaluation Of Nanocomposites For Water Purification, Julio Eduardo Padilla

Open Access Theses & Dissertations

The United Nations estimate that around 780 million people do not have access to clean and safe water and around 2.5 billion people do not have proper water sanitation. As a result, around 6-8 million people die each year due to water related diseases, such as cholera and dysentery, and disasters. As population increases the water problem will become more difficult to solve. Furthermore, climate change threatens to intensify water scarcity. The design of functional materials at the nanoscale offer unique solutions in molecular sorbents and catalytic systems that can develop into cost-effective solutions in water treatment by reducing the …


Identifying Non-Classical Active Sites As A Tool For Enzyme Inhibition, Marisol Serrano Jan 2016

Identifying Non-Classical Active Sites As A Tool For Enzyme Inhibition, Marisol Serrano

Open Access Theses & Dissertations

Chagas disease, caused by the parasite Trypanosoma cruzi, is an endemic life-threatening disease that affects mainly the heart. It remains the leading cause of heart failure in Latin American countries. Since current treatments against this parasite are highly toxic and somewhat ineffective, novel and more efficacious types of interventions are desired. Cruzain, identified as the major cathepsin for T. cruzi, plays a major role in the parasite's life cycle; making this enzyme very attractive for potential trypanocidal drugs discovery. The recombinant cruzain is synthesized as a zymogenic pro-protein (PCZN) which possesses a pro domain and a catalytic domain. In this …


Oxyhalogen-Sulfur Chemistry: Kinetics And Mechanism Of Oxidation Of N-Acetylthiourea By Aqueous Bromate And Acidified Bromate, Kudzanai Chipiso, Wilbes Mbiya, Thai Tran, Reuben H. Simoyi Jan 2016

Oxyhalogen-Sulfur Chemistry: Kinetics And Mechanism Of Oxidation Of N-Acetylthiourea By Aqueous Bromate And Acidified Bromate, Kudzanai Chipiso, Wilbes Mbiya, Thai Tran, Reuben H. Simoyi

Chemistry Faculty Publications and Presentations

The oxidation of N-acetylthiourea (ACTU) by acidic bromate has been studied by observing formation of bromine in excess bromate conditions. The reaction displays an induction period before formation of bromine. The stoichiometry of the reaction was determined to be 4:3: 4BrO 3 – +3(CH 3 CO)NH(NH 2 )C=S+3H 2 O®4Br – +3(CH 3 CO)NH(NH 2 )C=O+3SO 4 2– +6H + (A) with a complete desulfurization of ACTU to its urea analogue. In excess bromate conditions the stoichiometry was 8:5: 8BrO 3 – + 5(CH 3 CO)NH(NH 2 )C=S + H 2 O ® 4Br 2 + 5(CH 3 CO)NH(NH 2 …


Synthesis, Characterization, And Properties Of Peroxo-Based Oxygen-Rich Compounds For Potential Use As Greener High Energy Density Materials, Nipuni-Dhanesha Horadugoda Gamage Jan 2016

Synthesis, Characterization, And Properties Of Peroxo-Based Oxygen-Rich Compounds For Potential Use As Greener High Energy Density Materials, Nipuni-Dhanesha Horadugoda Gamage

Wayne State University Dissertations

One main aspect of high energy density material (HEDM) design is to obtain greener alternatives for HEDMs that produce toxic byproducts. Primary explosives lead azide, lead styphnate, and mercury fulminate contain heavy metals that cause heavy metal poisoning. Leaching of the widely used tertiary explosive NH4ClO4 into groundwater has resulted in human exposure to ClO4– ions, which cause disruptions of thyroid related metabolic pathways and even thyroid cancer. Many research efforts to find replacements have gained little success. Thus, there is a need for greener HEDMs. Peroxo-based oxygen-rich compounds are proposed as a potential new class of greener HEDMs due …


Development Of Single And Array Electro-Chemical Sensors For Real-Time Trace Metal Analysis In Aqueous Environmental Media, Yuanyuan Yang Jan 2016

Development Of Single And Array Electro-Chemical Sensors For Real-Time Trace Metal Analysis In Aqueous Environmental Media, Yuanyuan Yang

Wayne State University Dissertations

Detection of trace metals has great importance in environmental and biological applications. While traditional electrochemical techniques have played critical roles in this field, their usefulness is limited by temporal resolution, Hg toxicity and stability concerns. Recently, we developed a method using fast-scan cyclic voltammetry (FSCV) at carbon-fiber microelectrodes (CFMs) to achieve rapid measurement of metal ions with high sensitivity, selectivity, and stability. Through optimizations this method showed strengths in real-time trace metal analysis. ‬‬‬‬‬‬

‪Analytical selectivity was improved via covalent functionalization on CFMs. We employed diazonium electrochemical reduction followed by click chemistry to create robust covalent attachments. We showcased its …


Identification Of Arabidopsis Gpat9 (At5g60620) As An Essential Gene Involved In Triacylglycerol Biosynthesis, Jay Shockey, Anushobha Regmi, Kimberly Cotton, Neil Adhikari, John Bowse, Philip D. Bates Dec 2015

Identification Of Arabidopsis Gpat9 (At5g60620) As An Essential Gene Involved In Triacylglycerol Biosynthesis, Jay Shockey, Anushobha Regmi, Kimberly Cotton, Neil Adhikari, John Bowse, Philip D. Bates

Faculty Publications

The first step in the biosynthesis of nearly all plant membrane phospholipids and storage triacylglycerols is catalyzed by a glycerol-3-phosphate acyltransferase (GPAT). The requirement for an endoplasmic reticulum (ER)-localized GPAT for both of these critical metabolic pathways was recognized more than 60 years ago. However, identification of the gene(s) encoding this GPAT activity has remained elusive. Here, we present the results of a series of in vivo, in vitro, and in silico experiments in Arabidopsis (Arabidopsis thaliana) designed to assign this essential function to AtGPAT9. This gene has been highly conserved throughout evolution and is …