Open Access. Powered by Scholars. Published by Universities.®

Digital Commons Network™

Open Access. Powered by Scholars. Published by Universities.®

Chemistry

Institution
Keyword
Publication Year
Publication
Publication Type
File Type

Articles 6151 - 6180 of 15574

Full-Text Articles in Entire DC Network

Gold-Assembled Silica-Coated Cobalt Nanoparticles As Efficient Magnetic Separation Units And Surface-Enhanced Raman Scattering Substrate, Lütfi̇ye Sezen Yildirim, Murat Kaya, Mürvet Volkan Jan 2019

Gold-Assembled Silica-Coated Cobalt Nanoparticles As Efficient Magnetic Separation Units And Surface-Enhanced Raman Scattering Substrate, Lütfi̇ye Sezen Yildirim, Murat Kaya, Mürvet Volkan

Turkish Journal of Chemistry

Magnetic and optical bifunctional nanoparticles that combine easy separation, preconcentration, and efficient SERS capabilities have been fabricated with high sensitivity and reproducibility through a low-cost method. These gold nanoparticles attached on magnetic silica-coated cobalt nanospheres (Co@SiO$_{2}$/AuNPs) display the advantage of strong resonance absorption due to gaps at nanoscale between neighboring metal nanoparticles bringing large field enhancements, known as "hot spots". The prepared particles can be controlled by using an external magnetic field, which makes them very promising candidates in biological applications and Raman spectroscopic analysis of dissolved organic species. The magnetic property of the prepared particles lowers the detection limits …

Go to article

Computational Investigation Of Influenza A Virus M2 Protein Inhibition Mechanism By Ion Channel Blockers, Mehmet Özbi̇l Jan 2019

Computational Investigation Of Influenza A Virus M2 Protein Inhibition Mechanism By Ion Channel Blockers, Mehmet Özbi̇l

Turkish Journal of Chemistry

The M2 protein of the influenza A virus, responsible for flu, is a homotetramer transmembrane protein, forming a transmembrane ion channel, where His 37s act as pH sensors and Trp 41s and Asp 44s act as channel gates. Opening of this channel leads to transfer of virus RNA into the human host. Thus, blocking this transfer is an important pharmaceutical strategy to stop infection. As a result of viral drug resistance, commercially available channel inhibitors, rimantadine (RIM) and amantadine (AMA), are not as effective as they used to be. Understanding binding sites and outcomes of binding will lead to new …

Go to article

Characterization And Purification Of 1,2,4-Triazole-Containing Phthalocyanines Synthesized By Microwave Method And Structure Elucidation By Spectroscopic Techniques, Asi̇ye Nas, Ümi̇t Demi̇rbaş, Nurhan Gümrükçüoğlu, Hali̇t Kanteki̇n Jan 2019

Characterization And Purification Of 1,2,4-Triazole-Containing Phthalocyanines Synthesized By Microwave Method And Structure Elucidation By Spectroscopic Techniques, Asi̇ye Nas, Ümi̇t Demi̇rbaş, Nurhan Gümrükçüoğlu, Hali̇t Kanteki̇n

Turkish Journal of Chemistry

The complexes of peripherally tetra-substituted metal-free (8), lead(II) 9), and zinc(II) (10) phthalocyanine derivatives were synthesized for the first time in this work. The structures of these new complex compounds have been elucidated using many spectral methods such as electronic absorption, FT-IR, $^{1}$H NMR, $^{13}$C NMR, elemental analysis, and mass spectra. The thermogravimetric behavior of compounds 8-10 was determined by thermogravimetric analysis method in addition to these spectral methods.

Go to article

3d-Qsar/Hqsar-Based Analysis Of Bioconcentration And Molecular Modification Of Monophenyl Aromatic Compounds, Qing Li, Wenwen Gu, Yu Li Jan 2019

3d-Qsar/Hqsar-Based Analysis Of Bioconcentration And Molecular Modification Of Monophenyl Aromatic Compounds, Qing Li, Wenwen Gu, Yu Li

Turkish Journal of Chemistry

Comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) of three-dimensional quantitative structure-activity relationship (3D-QSAR) models were conducted using 36 aromatic compound congeners as the training set and eight aromatic compound congeners as the test set. Logarithms of experimental bioconcentration data (logBCF) were used as dependent variables and the physicochemical properties of the aromatic compound congeners were used as independent variables. Furthermore, the molecular holographic quantitative structure--activity relationship (HQSAR) model constructed by the HQSAR module in Sybyl software was used to establish a method to find molecular activity substitution sites of bioconcentration potential by coupling the molecule …

Go to article

New Flavonoid Glycosides Conjugates: Synthesis, Characterization, And Evaluation Of Their Cytotoxic Activities, Sawssen Souiei, Fatima Bousejra-El Garah, Mohamed Amine Belkacem, Mansour Znati, Jalloul Bouajila, Hichem Ben Jannet Jan 2019

New Flavonoid Glycosides Conjugates: Synthesis, Characterization, And Evaluation Of Their Cytotoxic Activities, Sawssen Souiei, Fatima Bousejra-El Garah, Mohamed Amine Belkacem, Mansour Znati, Jalloul Bouajila, Hichem Ben Jannet

Turkish Journal of Chemistry

A series of novel halogenated 3-hydroxyflavones (3HFs) were prepared by reacting halogenated hydroxyacetophenones with the appropriate aromatic aldehyde. Glycosylation of 3HFs with acetobromoglucose and deprotection of the acetyl protective groups afforded the desired 3-$O$-flavonoids glycosides in satisfactory yields. All the prepared compounds were tested for their cytotoxic activity against HCT-116, MCF-7, and OVCAR-3 human cancer cell lines. The 3HFs exhibited higher cytotoxic activities compared with the glycosylated flavonoids. Overall, the structure-activity relationship study showed that the introduction of glycoside moiety at the C-3 OH position does not improve the bioactivity.

Go to article

Why Protein Conformers In Molecular Dynamics Simulations Differ From Their Crystal Structures: A Thermodynamic Insight, Fi̇li̇ppo Pullara, Mao Wenzhi, Mert Gür Jan 2019

Why Protein Conformers In Molecular Dynamics Simulations Differ From Their Crystal Structures: A Thermodynamic Insight, Fi̇li̇ppo Pullara, Mao Wenzhi, Mert Gür

Turkish Journal of Chemistry

Conformers generally deviate structurally from their starting X-ray crystal structures early in molecular dynamics (MD) simulations. Studies have recognized such structural differences and attempted to provide an explanation for and justify the necessity of MD equilibrations. However, a detailed explanation based on fundamental physics and validation on a large ensemble of protein structures is still missing. Here we provide the first thermodynamic insights into the radically different thermodynamic conditions of crystallization solutions and conventional MD simulations. Crystallization solution conditions can lead to nonphysiologically high ion concentrations, low temperatures, and crystal packing with strong specific protein--protein interactions, not present under physiological …

Go to article

Acid-Activated Clay As Heterogeneous And Reusable Catalyst For The Synthesis Of Bioactive Cyclic Ketal Derivatives, Wided Hagui, Rym Essid, Sondes Amri, Nadia Fares, Mohamed Khabbouchi, Olfa Tabbene, Ferid Limam, Ezzedine Srasra, Neji Besbes Jan 2019

Acid-Activated Clay As Heterogeneous And Reusable Catalyst For The Synthesis Of Bioactive Cyclic Ketal Derivatives, Wided Hagui, Rym Essid, Sondes Amri, Nadia Fares, Mohamed Khabbouchi, Olfa Tabbene, Ferid Limam, Ezzedine Srasra, Neji Besbes

Turkish Journal of Chemistry

A new heterogeneous acid catalyst based on a natural resource, Tunisian clay (Clay-H0.5), has been prepared and characterized by FT-IR, FE-SEM, and powder X-ray diffraction (XRD), as well as chemical composition, cation exchange capacity, specific surface area, and pore volume. Acid treatment for 0.5 h enlarged the surface area from 78.24 to 186.10 m$^{2}$/g and pore volume (PV) from 0.186 to 0.281 cm$^{3}$/g. The catalytic activity of this material was investigated in ketalization reaction under mild solvent-free conditions. This achieved up to 92% isolated yield for only 10 wt.% of the catalyst. This environmentally friendly method has advantages such as …

Go to article

Boric Acid As An Efficient And Green Catalyst For The Synthesis Of 2-Amino-4,6-Diarylnicotinonitrile Under Microwave Irradiation In Solvent-Free Conditions, Zahra Hosseinzadeh, Ali Ramazani, Nima Razzaghi-Asl, Katarzyna Slepokura, Tadeusz Lis Jan 2019

Boric Acid As An Efficient And Green Catalyst For The Synthesis Of 2-Amino-4,6-Diarylnicotinonitrile Under Microwave Irradiation In Solvent-Free Conditions, Zahra Hosseinzadeh, Ali Ramazani, Nima Razzaghi-Asl, Katarzyna Slepokura, Tadeusz Lis

Turkish Journal of Chemistry

Microwave irradiation has been used to improve the one-pot synthesis of substituted 2-amino-4,6-diarylnicoti- nonitrile in the presence of boric acid as an efficient and green catalyst under solvent-free conditions within 48--60 s. All the analogs that have not been reported previously were characterized by their melting points, IR, $^{1}$H NMR, and $^{13}$C NMR spectra. One of the structures was verified by the analysis of a single crystal. The reported synthetic procedure provided remarkable advantages such as short reaction times, excellent yield, facile workup, and the use of a green catalyst.

Go to article

Organotemplate-Free Cs-Abw Nanozeolite As Highly Reactive And Recyclable Catalyst For Henry Reaction Between Benzaldehyde And Nitroethane, Tamara Mahmoud Ali Ghrear, Ka Lun Wong, Soon Huat Tan, Tau Chuan Ling, Hussein Awala, Engpoh Ng Jan 2019

Organotemplate-Free Cs-Abw Nanozeolite As Highly Reactive And Recyclable Catalyst For Henry Reaction Between Benzaldehyde And Nitroethane, Tamara Mahmoud Ali Ghrear, Ka Lun Wong, Soon Huat Tan, Tau Chuan Ling, Hussein Awala, Engpoh Ng

Turkish Journal of Chemistry

Zeolite Cs-ABW nanocatalyst has been hydrothermally synthesized without using any harmful organic template. The zeolite nanocrystal with very high solid yield (81.88%) can be obtained within 60 min and at 180 $^{\circ}$C (∼ 20 atm), conditions that are much faster and gentler than the existing synthesis methods. The orthorhombic Cs-ABW nanocrystals (mean size of 32 nm) have high aluminum content (Si/Al ratio $=$ 1.14) and possess high basicity. The nanocrystals also exhibit better catalytic activity than conventional homogeneous catalysts in the Henry (nitroaldol) reaction of benzaldehyde with nitroethane under microwave heating conditions. The nanocatalyst does not suffer from coking and …

Go to article

Removal Of Cr(Vi) From Wastewater Through Glycine Assisted Synthesis Of Tio$_{2}$, Bi̇lsen Kurtteki̇n, Demet Özer, Nurşen Altuntaş Öztaş Jan 2019

Removal Of Cr(Vi) From Wastewater Through Glycine Assisted Synthesis Of Tio$_{2}$, Bi̇lsen Kurtteki̇n, Demet Özer, Nurşen Altuntaş Öztaş

Turkish Journal of Chemistry

In this study, titanium dioxide was synthesized via solution combustion method. Titanium(IV) oxysulfate was used as a titanium source. The fuel type, reaction time, and reaction temperature were tested for optimization. The glycine was set as a suitable fuel. Structural properties of the final product were characterized by p-XRD. Scanning electron microscopy (SEM) and BET techniques were used to examine the morphology. The synthesized products were compared to the commercial TiO$_{2}$ and it was found that the titanium dioxide with the high surface area (63.628 m$^{2}$/g) has been successfully synthesized by solution combustion method with time and energy saving. In …

Go to article

An Exploration Of New Avenues Regarding Deep Tissue Penetration And Higher Singlet Oxygen Efficiencies: Novel Near-Ir Photosensitizers For Photodynamic Therapy, Ni̇sa Yeşi̇lgül, Bi̇lal Kiliç Jan 2019

An Exploration Of New Avenues Regarding Deep Tissue Penetration And Higher Singlet Oxygen Efficiencies: Novel Near-Ir Photosensitizers For Photodynamic Therapy, Ni̇sa Yeşi̇lgül, Bi̇lal Kiliç

Turkish Journal of Chemistry

A series of novel BODIPY-bearing electron-withdrawing groups at the meso position are reported here. According to the optical measurements, it may be clearly seen that the introduction of electron-donating groups into 3,5-positions and the presence of electron-withdrawing groups at the meso position of the BODIPY core resulted in spectacular bathochromic shifts (up to ∼ 304 nm), and the projected photosensitizers had absorption bands in the therapeutic window of the electromagnetic spectrum (600-900 nm). The absorption maxima of compounds 4,5,6, and 7 were at 886 nm, 890 nm, 760 nm, and 761 nm, respectively. The singlet oxygen generation experiments revealed that …

Go to article

Intermolecular Complexes Of Halocyclopropenone Derivatives With The Hypohalous Acids Hof, Hocl, Hobr, And Hoi, Dariush Mirzaei, Abedien Zabardasti, Yaghoub Mansourpanah Jan 2019

Intermolecular Complexes Of Halocyclopropenone Derivatives With The Hypohalous Acids Hof, Hocl, Hobr, And Hoi, Dariush Mirzaei, Abedien Zabardasti, Yaghoub Mansourpanah

Turkish Journal of Chemistry

The intermolecular interactions between halocyclopropenone derivatives (HC$_{3}$OX; X $=$ I, Br, Cl, and F) and hypohalous acids (HOY; Y $=$ I, Br, Cl, and F) were studied via the MP2 method utilizing the aug-cc-pVTZ and aug-cc-pVTZ(-PP) basis sets. The three types of complexes were hydrogen bonds, halogen bonds, and complexes containing both hydrogen and halogen bonds. The results obtained indicated that interactions in the Type 1 complexes were stronger than those in Types 2 and 3. The H-O bonds revealed red shifts with complex formation in Types 1 and 2. The O-Y bonds displayed red shifts in the Type 3 …

Go to article

Preparation Of Epoxidized Sunflower Oil Metal Soap Derivatives And Their Use As Heat Stabilizers For Polyvinyl Chloride, Ouassila Chelil, Naima Belhaneche-Bensemra, Daniel Lopez Garcia, Marta Fernandez-Garcia, Mohamed Tahar Benaniba Jan 2019

Preparation Of Epoxidized Sunflower Oil Metal Soap Derivatives And Their Use As Heat Stabilizers For Polyvinyl Chloride, Ouassila Chelil, Naima Belhaneche-Bensemra, Daniel Lopez Garcia, Marta Fernandez-Garcia, Mohamed Tahar Benaniba

Turkish Journal of Chemistry

The aim of this work was to prepare metal soaps of epoxidized sunflower oil (ESO) and use them as thermal stabilizers for polyvinyl chloride (PVC). For that purpose, commercial sunflower oil was first epoxidized and then used to prepare (Ba, Zn, Pb, and Cd) metal soap derivatives, which were characterized by Fourier transform infrared (FTIR) spectroscopy, thermogravimetric analysis (TGA), and differential scanning calorimetry (DSC). The prepared metal soaps derivatives of ESO were used as thermal stabilizers for plasticized PVC. Discoloration, residual thermal stability at 200 $^{\circ}$C , and rheological properties of PVC samples were tested. The structural modifications were investigated …

Go to article

Synthesis And Antimicrobial Activity Of 1-(Benzo[B]Thiophen-4-Yl)-4-(2-(Oxo, Hydroxyl, And Fluoro)-2-Phenylethyl)Piperazine And 1-(Benzo[D]Isothiazole-3-Yl)-4-(2-(Oxo, Hydroxy, And Fluoro)-2-Phenylethyl)Piperazine Derivatives, Vaibhav Mishra, Tejpal Singh Chundawat Jan 2019

Synthesis And Antimicrobial Activity Of 1-(Benzo[B]Thiophen-4-Yl)-4-(2-(Oxo, Hydroxyl, And Fluoro)-2-Phenylethyl)Piperazine And 1-(Benzo[D]Isothiazole-3-Yl)-4-(2-(Oxo, Hydroxy, And Fluoro)-2-Phenylethyl)Piperazine Derivatives, Vaibhav Mishra, Tejpal Singh Chundawat

Turkish Journal of Chemistry

Twenty-two compounds in a series of 1-(benzo[$b$]thiophen-4-yl)-4-(2-(oxo, hydroxy, and fluoro)-2-phenylethyl) piperazine and 1-(benzo[$d$]isothiazole-3-yl)-4-(2-(oxo, hydroxy, and fluoro)-2-phenylethyl)-piperazine derivatives were synthesized through nucleophilic substitution reaction of phenacyl bromides with hetero arylpiperazine, reduction, and then fluorination. Compound K2 showed potent activity against gram-negative bacterial stain P. aeruginosa with minimum inhibitory concentration (MIC) value of 12.5 μg/mL. This compound showed better inhibitory activity than the standard drug chloramphenicol. K4 against S. aureus, H2 against P. aeruginosa, and F4 against E. coli showed good inhibitory activity with MIC values of 62.5 μg/mL. Compounds K1, K2, K4, K8, F1, and F3 showed good inhibitory activity against …

Go to article

Electrochemical Oxidation Of Curcuminoids: An Experimental And Computational Investigation, Zeynep Kalaycioğlu, Nurgül Karadaş, Mehmet Emi̇n Çinar, Si̇bel Ayşil Özkan, Duri̇şehvar Özer Ünal, Ayşegül Gölcü, Fatma Bedi̇a Eri̇m Jan 2019

Electrochemical Oxidation Of Curcuminoids: An Experimental And Computational Investigation, Zeynep Kalaycioğlu, Nurgül Karadaş, Mehmet Emi̇n Çinar, Si̇bel Ayşil Özkan, Duri̇şehvar Özer Ünal, Ayşegül Gölcü, Fatma Bedi̇a Eri̇m

Turkish Journal of Chemistry

Curcuminoids, reported to have important biological properties, such as antioxidant, anti-Alzheimer, and antidiabetic properties, comprise curcumin (CRM; 1,7-bis [4-hydroxy-3-methoxyphenyl]-1,6-heptadiene-3,5-dione) and its derivatives demethoxycurcumin (DMC; (E,6E)-1-(3,4-dimethoxy-cyclohexyl)-7-(3,4-dimethoxyphenyl)hepta-1,6-diene-3,5-dione) and bisdemethoxycurcumin (BDMC; 1,7-bis[4-hydroxyphenyl]-1,6-heptadiene-3,5-dione). Their electrochemical oxidations are thoroughly explored by applying cyclic and differential pulse voltammetric techniques. The dependence of current intensities and potentials on pH, concentration, scan rate, and nature of the buffer was investigated. The outcome is supported by density functional theory computations indicating the transfer of 4-e$^{-}$/H$^{+}$, 6-e$^{-}$/H$^{+}$, and 8-e$^{-}$/H$^{+}$ couples involved in the oxidation mechanisms of CRM, DMC, and BDMC, respectively, leading to the formation of the same oxidized product.

Go to article

Comparative Study On Physicochemical And Mechanical Characterization Of New Nanocarbon-Based Hydroxyapatite Nanocomposites, Reka Barabas, Dennis Deemter, Gabriel Katona, Gabriel Batin, Laszlo Barabas, Liliana Bizo, Oana Cadar Jan 2019

Comparative Study On Physicochemical And Mechanical Characterization Of New Nanocarbon-Based Hydroxyapatite Nanocomposites, Reka Barabas, Dennis Deemter, Gabriel Katona, Gabriel Batin, Laszlo Barabas, Liliana Bizo, Oana Cadar

Turkish Journal of Chemistry

This study evaluated the effect of different additives such as nanocarbon compounds (0.5, 1.0, and 2.0 wt.%) with different morphologies and gelatin (Gel) (10 wt.%) on the mechanical properties of hydroxyapatite (Hap)-based nanocomposites (NCs). The NCs were prepared using the innovation process "SmartBox" based on the Internet of things (IoT), which provides process control and reproducibility, and they were characterized by X-ray diffraction, particle size distribution, transmission electron microscopy, Fourier transform infrared spectroscopy, and thermal analysis. The compressive strength tests demonstrated that the use of grapheme oxide (Hap_ GO_ 2.0 - 133 N/mm$^{2})$, and/or Gel (Hap_ Gel - 152 N/mm$^{2})$ …

Go to article

Methyl-Substituted 2-Aminothiazole--Based Cobalt(Ii) And Silver(I) Complexes: Synthesis, X-Ray Structures, And Biological Activities, Ezzat Khan, Tufail Ahmad, Zarif Gul, Farhat Ullah, Muhammad Nawaz Tahir, Awal Noor Jan 2019

Methyl-Substituted 2-Aminothiazole--Based Cobalt(Ii) And Silver(I) Complexes: Synthesis, X-Ray Structures, And Biological Activities, Ezzat Khan, Tufail Ahmad, Zarif Gul, Farhat Ullah, Muhammad Nawaz Tahir, Awal Noor

Turkish Journal of Chemistry

2-Aminothiazole derivatives bear three nucleophilic centers, i.e. endocyclic N, exocyclic NH$_{2}$, and S atom in the ring system. In addition to these centers there are $\pi$-electrons in the ring system which can also expectedly be involved in some sort of coordination. To the best of our knowledge the solid state coordination chemistry of such ligands has not been fully presented in the literature. These ligands (2-amino-4-methylthiazole and 2-amino-5-methylthiazole) were coupled with CoCl$_{2}$ under aerobic conditions to form tetrahedral complexes, bis(2-amino-4-methylthiazole)dichlorocobalt(II) (1) and bis(2-amino-5-methylthiazole)dichlorocobalt(II) (2). Reaction of 2-amino-5-methylthiazole with AgNO$_{3}$ led to an expected two-coordinated, bis(2-amino-5-methylthiazole)silver(I) nitrate (3) as crystalline material. …

Go to article

Determination Of Triacylglycerols And Fatty Acid Composition Of Chilopsis Linearis Seed Oil By Reverse-Phase High-Performance Liquid Chromatography, Anh Van Nguyen, Victor Ivanovic Deineka, Lyudmila Aleksandrovna Deineka, Anh Thi Ngoc Vu Jan 2019

Determination Of Triacylglycerols And Fatty Acid Composition Of Chilopsis Linearis Seed Oil By Reverse-Phase High-Performance Liquid Chromatography, Anh Van Nguyen, Victor Ivanovic Deineka, Lyudmila Aleksandrovna Deineka, Anh Thi Ngoc Vu

Turkish Journal of Chemistry

In the present work, the compositions of the 27 triacylglycerols (TAGs) as well as fatty acid composition of Chilopsis linearis seed oil were determined by reverse-phase high-performance liquid chromatography (RP-HPLC) with diode array and mass spectrometric detections. It was shown that the main conjugated acid in the seed oil is a catalpic acid, (9E,11E,13Z)-octadeca-9,11,13-trienoic acid, while two unusual fatty acids have the parameters satisfying the literature data for (10E,12E)-octadeca-10,12-dienoic and (9E,12E)-octadeca-9,12-dienoic acids. For the two conjugated acid substituents the isosbestic point (at 234 nm) was found and was used to calculate the ratios of TAGs with different chromophores in the …

Go to article

Improving The Mechanical And Thermal Properties Of Chlorinated Poly(Vinyl Chloride) By Incorporating Modified Caco$_{3}$ Nanoparticles As A Filler Jan 2019

Improving The Mechanical And Thermal Properties Of Chlorinated Poly(Vinyl Chloride) By Incorporating Modified Caco$_{3}$ Nanoparticles As A Filler

Turkish Journal of Chemistry

Chlorinated poly(vinyl chloride) (CPVC)/calcium carbonate nanocomposites were successfully prepared by the incorporation of calcium carbonate (CaCO$_{3})$ nanoparticles into the CPVC matrix. The compatibility between the two phases was obtained by surface modification of the CaCO$_{3}$ nanoparticles with stearic acid, leading to improved material performance. The effects of the addition of different amounts of CaCO$_{3}$ nanoparticles to the CPVC on the thermal, mechanical, and morphological characteristics of the CPVC/CaCO$_{3}$ nanocomposites were investigated. The thermal stability of the CPVC/CaCO$_{3}$ nanocomposites was evaluated by thermogravimetric analysis~and differential scanning calorimetry. In addition, the surface texture of the CPVC and the dispersion of the CaCO$_{3}$ …

Go to article

Novel "Turn Off-On" Sensors For Detection Of Dna-Acrylamide Interaction Using Zns Quantum Dots As A Phosphorescent Probe, Hayri̇ye Eda Şatana Kara Jan 2019

Novel "Turn Off-On" Sensors For Detection Of Dna-Acrylamide Interaction Using Zns Quantum Dots As A Phosphorescent Probe, Hayri̇ye Eda Şatana Kara

Turkish Journal of Chemistry

A novel "turn off-on" sensor for detection of interaction between DNA and acrylamide (ACR) was developed. In this method, L-cysteine capped Mn-doped ZnS quantum dots (QDs) were used as room temperature phosphorescent probes. In the ``turn-off'' mode, ACR was absorbed onto the surface of QDs via electrostatic interaction, which caused a quenching effect of room-temperature phosphorescence signal by photoinduced electron-transfer mechanism. ACR was removed from the QDs' surface with the addition of DNA. Thus, the phosphorescence emission of QDs was recovered and the system was turned to the ``turn-on'' mode. The quenching mechanism of QDs by ACR was collisional (dynamic) …

Go to article

Chemistry Of Endemic \Textit{Tanacetum Mucroniferum} Hub.-Mor. {\&} Grierson Extracts And Three New Sesquiterpene Lactones, Hüseyi̇n Servi̇, Nezhun Gören Jan 2019

Chemistry Of Endemic \Textit{Tanacetum Mucroniferum} Hub.-Mor. {\&} Grierson Extracts And Three New Sesquiterpene Lactones, Hüseyi̇n Servi̇, Nezhun Gören

Turkish Journal of Chemistry

Tanacetum mucroniferum Hub.-Mor. & Grierson was collected from Sakaltutan in Erzincan Province of Turkey. Comparative phytochemical investigation was carried out on the ethyl acetate and methanol extracts of the plant. The secondary metabolites were isolated and purified by chromatographic methods such as column chromatography, medium pressure liquid chromatography, high-performance thin-layer chromatography, and preparative thin-layer chromatography. The extracts of the aerial parts of Tanacetum mucroniferum yielded three new sesquiterpene lactones and some known compounds, namely two sesquiterpene lactones, six flavonoids, three coumarins, and one triterpene. Structures of isolated compounds were determined by IR, UV, $^{1}$H NMR, APT, COSY, HSQC, HMBC, NOESY, …

Go to article

Synthesis Of Novel Azo Linkage-Based Schiff Bases Including Anthranilic Acid And Hexanoic Acid Moieties: Investigation Of Azo-Hydrazone And Phenol-Keto Tautomerism, Solvatochromism, And Ionochromism, Özlem Özdemi̇r Jan 2019

Synthesis Of Novel Azo Linkage-Based Schiff Bases Including Anthranilic Acid And Hexanoic Acid Moieties: Investigation Of Azo-Hydrazone And Phenol-Keto Tautomerism, Solvatochromism, And Ionochromism, Özlem Özdemi̇r

Turkish Journal of Chemistry

Two new azo-Schiff base receptors (L$_{{1}}$ and L$_{{2}})$ containing azo and azomethine groups with a conjugated group (benzyl ring of anthranilic acid, in L$_{{1}})$ and electron-donating group (alkyl chain of hexanoic acid, in L$_{{2}})$ were synthesized and characterized. Azo-hydrazone/phenol-keto tautomerism and solvatochromism were investigated. Studying their sensing ability towards cations (Co$^{2+}$, Cu$^{2+}$, Zn$^{2+}$, Ni$^{2+}$, Pb$^{2+}$, Cd$^{2+}$, Mn$^{2+}$, Fe$^{3+}$, Cr$^{3+}$, and Al$^{3+})$, high sensitivity and selectivity were recorded for Fe$^{3+}$ by naked eye and UV-Vis spectra in DMF-aqueous HEPES buffer (v:v, 1:1, pH 6.8). The color of L$_{{1}}$ and L$_{{2}})$ solutions instantly changed from yellow to deep orange and pale orange. …

Go to article

Synthesis And Characterization Of Polycaprolactone-Based Segmented Polyurethanes, Aysun Güney, Aysel Kiziltay, Nesri̇n Hasirci, Tuğba Endoğan Tanir Jan 2019

Synthesis And Characterization Of Polycaprolactone-Based Segmented Polyurethanes, Aysun Güney, Aysel Kiziltay, Nesri̇n Hasirci, Tuğba Endoğan Tanir

Turkish Journal of Chemistry

Segmented polyurethanes were synthesized by the reactions of poly($\varepsilon $-caprolactone) (PCL)-diol and 1,6-hexamethylene diisocyanate through bulk polymerization without using solvent, initiator, or catalyst. Phase separation and hydrogen bond formation between hard segments or between hard and soft segments were examined by Fourier transform infrared spectroscopy (FTIR)-ATR and X-ray diffraction (XRD), while physical and mechanical properties were studied by atomic force microscope, differential scanning calorimeter, dynamic mechanical analysis, and tensile tester. When the diisocyanate content was increased, deconvolution results of FTIR-ATR in C$=$O and N-H regions demonstrated better miscibility of the segments and XRD results showed a significant decrease in the …

Go to article

Pore Length- And Ion Concentration-Dependent Ionic Current In Cylindrical Nanopores: An Atomistic Molecular Dynamics Study, Nazar İleri̇ Ercan Jan 2019

Pore Length- And Ion Concentration-Dependent Ionic Current In Cylindrical Nanopores: An Atomistic Molecular Dynamics Study, Nazar İleri̇ Ercan

Turkish Journal of Chemistry

The sensing of individual molecules as they pass through nanopores under an external field is a popular research field. The approach is simply based on the detectable temporary blockades in the ionic current as the molecules pass through the nanopores. These signatures of the current have been shown to be a function of nanoparticle and nanopore size and geometry as well as the external electric field. However, models developed in this context fail to predict the experimentally observed behavior in technologically important shorter nanopores. Here we present atomistic molecular dynamics simulation results from colloidal nanoparticle translocation through mid-to-low aspect ratio …

Go to article

Design, Synthesis, And Evaluation Of The Antimycobacterial Activity Of 3-Mercapto-1,2,4-Triazole--Pyrrole Hybrids, Gheorghe Roman, Andra-Cristina Bostanaru, Valentin Nastasa, Mihai Mares Jan 2019

Design, Synthesis, And Evaluation Of The Antimycobacterial Activity Of 3-Mercapto-1,2,4-Triazole--Pyrrole Hybrids, Gheorghe Roman, Andra-Cristina Bostanaru, Valentin Nastasa, Mihai Mares

Turkish Journal of Chemistry

A series of 3-mercapto-1,2,4-triazole--pyrrole hybrids was designed as antimycobacterial agents by employing 5-(4-(1$H$-pyrrol-1-yl)phenyl)-4$H$-1,2,4-triazole-3-thiol as the scaffold onto which several types of moieties were introduced in the triazole ring at N-4 and N-2 and as substituents of the mercapto function. The aforementioned moieties are an allyl or a phenyl moiety at N-4; an aminomethyl group at N-2; or methyl, substituted benzyl, ethoxycarbonylmethyl, or substituted phenacyl at sulfur. Investigation of the compounds in the resulting library as growth inhibitors of Mycobacterium smegmatis showed that their minimum inhibitory concentration was higher than 64 mg/L.

Go to article

Synthesis And Antitumor Activities Of 2-(Piperidin-4-Yl)-Thiazole-4-Carboxamides Analogues Of Tubulysins, Xiangfu Peng, Mingsha Shao, Shuchao Ma, Lei Yao Jan 2019

Synthesis And Antitumor Activities Of 2-(Piperidin-4-Yl)-Thiazole-4-Carboxamides Analogues Of Tubulysins, Xiangfu Peng, Mingsha Shao, Shuchao Ma, Lei Yao

Turkish Journal of Chemistry

}Tubulysins are a family of natural products that exhibit potent antitumor activities, which have attracted much attention from synthetic and medicinal chemists. Previous attempts to aromatize the Tuv part of tubulysin analogues led to a loss in antitumor activity, which suggested that the Ile and Tuv fragments of these analogues were adopting different conformations than the natural products. In this study, a series of 2-(piperidin-4-yl)-thiazole-4-carboxamides have been prepared to investigate whether an intramolecular H-bond between key NH and OH groups is responsible for the conformational control. The antitumor activities of these analogues have been screened using MDA-MB-231-breast, Siha-cervical, MCF7-breast, and …

Go to article

Protonation Behavior Of Dextran Amino Acid Esters, Konrad Hotzel, Lidjia Fras Zemljic, Matej Bracic, Thomas Heinze Jan 2019

Protonation Behavior Of Dextran Amino Acid Esters, Konrad Hotzel, Lidjia Fras Zemljic, Matej Bracic, Thomas Heinze

Turkish Journal of Chemistry

Dextran esters of different amino acids (glycine, $\beta $-alanine, L-ornithine, L-lysine) are investigated regarding their pK$_{a}$ values by potentiometric titration. The pK$_{a}$ values of the dextran derivatives are generally dependent on the position of the amino group in relation to the ester group, i.e. the nearer they are located in the molecule, the lower the resulting pK$_{a}$ values are, L-ornithine ester being the exception. An influence of the polymer backbone is ruled out. Stability against hydrolysis at different pH values and over longer periods at constant pH value is measured by potentiometric and polyelectrolyte titration. The $\beta $-alanine ester shows …

Go to article

Metaproteomics Reveal That Rapid Perturbations In Organic Matter Prioritize Functional Restructuring Over Taxonomy In Western Arctic Ocean Microbiomes, Molly P. Mikan, H. Rodger Harvey, Emma Timmins-Schiffman, Michael Riffle, Damon H. May, Ian Salter, William S. Noble, Brook L. Nunn Jan 2019

Metaproteomics Reveal That Rapid Perturbations In Organic Matter Prioritize Functional Restructuring Over Taxonomy In Western Arctic Ocean Microbiomes, Molly P. Mikan, H. Rodger Harvey, Emma Timmins-Schiffman, Michael Riffle, Damon H. May, Ian Salter, William S. Noble, Brook L. Nunn

OES Faculty Publications

We examined metaproteome profiles from two Arctic microbiomes during 10-day shipboard incubations to directly track early functional and taxonomic responses to a simulated algal bloom and an oligotrophic control. Using a novel peptide-based enrichment analysis, significant changes (p-value < 0.01) in biological and molecular functions associated with carbon and nitrogen recycling were observed. Within the first day under both organic matter conditions, Bering Strait surface microbiomes increased protein synthesis, carbohydrate degradation, and cellular redox processes while decreasing C1 metabolism. Taxonomic assignments revealed that the core microbiome collectively responded to algal substrates by assimilating carbon before select taxa utilize and metabolize nitrogen intracellularly. Incubations of Chukchi Sea bottom water microbiomes showed similar, but delayed functional responses to identical treatments. Although 24 functional terms were shared between experimental treatments, the timing, and degree of the remaining responses were highly variable, showing that organic matter perturbation directs community functionality prior to alterations to the taxonomic distribution at the microbiome class level. The dynamic responses of these two oceanic microbial communities have important implications for timing and magnitude of responses to organic perturbations within the Arctic Ocean and how community-level functions may forecast biogeochemical gradients in oceans.

Go to article

Synthesis And Bioactivity Of Sulfide Derivatives Containing 1,3,4-Oxadiazole And Pyridine, Gang Yu, Shunhong Chen, Feng He, Dexia Luo, Yu Zhang, Jian Wu Jan 2019

Synthesis And Bioactivity Of Sulfide Derivatives Containing 1,3,4-Oxadiazole And Pyridine, Gang Yu, Shunhong Chen, Feng He, Dexia Luo, Yu Zhang, Jian Wu

Turkish Journal of Chemistry

A series of novel sulfide derivatives containing 1,3,4-oxadiazole and pyridine were synthesized, characterized, and tested for their antibacterial activity against tobacco bacterial wilt and rice bacterial blight and for insecticidal activity toward diamondback moth. The results showed that some compounds had good insecticidal and bactericidal activity, e.g., the activities of compounds 6e and 6g-6j toward tobacco bacterial wilt were much better than those of commercial thiodiazole-copper, and some of the synthesized compounds possessed good insecticidal activity against Plutella xylostella. Compounds 6d, 6h, 6j, 6l, 6p, 6r, and 6p displayed over 93% activity at 500 mg L$^{-1}$.

Go to article

Targeting Human Telomeric Dna With Azacyanines, Ayça Küçükakdağ Doğu, Özgül Persi̇l Çeti̇nkol Jan 2019

Targeting Human Telomeric Dna With Azacyanines, Ayça Küçükakdağ Doğu, Özgül Persi̇l Çeti̇nkol

Turkish Journal of Chemistry

Small molecules targeting telomeric DNA or its interactions with telomerase have been an active area of cancer research. In the present study, we investigated the interactions of six benzimidazole compounds, called azacyanines, differing from each other in alkyl chain length and branching in the benzimidazole ring (azamethyl, azaethyl, azapropyl, azaisopropyl, azabutyl, and azaisobutyl) with human telomeric DNA (tel24) in 1:1 and 1:6 ratio (tel24:azacyanine) using UV-Vis, circular dichroism (CD), and fluorescence spectroscopy. All the compounds were binding to tel24 as indicated by the formation of the weak induced CD band between 320 nm and 360 nm. A substantial red shift …

Go to article

First Prev Next Last