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University Of Arkansas, Chemistry And Biochemistry Department Research Publications, 2014- November 2023. 107p., Jeremy Smith, Lutishoor Salisbury
University Of Arkansas, Chemistry And Biochemistry Department Research Publications, 2014- November 2023. 107p., Jeremy Smith, Lutishoor Salisbury
University Libraries Faculty Publications and Presentations
This report provides a compilation of the research publications by the Chemistry and Biochemistry faculty for the period: 2014 - November 2023. The information was gathered from major databases in science and technology including Web of Science, SciFinder, Reaxys, PubMed, IEEE Explore and Engineering Index. At least one author in each of the publications has the CHBC department as its affiliation. It includes a table summarizing the research. The listing is organized according to type of publications within specific years.
Openasap: An Affordable 3d Printed Atmospheric Solids Analysis Probe (Asap) Mass Spectrometry System For Direct Analysis Of Solid And Liquid Samples, Robert Samples, Rico Mukoyama, Jacob Shaffer, Jill Mikucki, Lesley Ann Giddings
Openasap: An Affordable 3d Printed Atmospheric Solids Analysis Probe (Asap) Mass Spectrometry System For Direct Analysis Of Solid And Liquid Samples, Robert Samples, Rico Mukoyama, Jacob Shaffer, Jill Mikucki, Lesley Ann Giddings
Chemistry: Faculty Publications
Atmospheric Solids Analysis Probe (ASAP) mass spectrometry is a versatile technique allowing direct sampling of solid and liquid samples, but its adoption is limited due to the high cost of commercial ASAP systems. To address this, we present OpenASAP, an open-source ASAP system for mass spectrometers that can be fabricated for $20 or less using 3D-printing. Our design is readily adaptable to instruments from different manufacturers and can be produced with a variety of additive manufacturing techniques on consumer-grade 3D-printers. The probe allows for rapid sampling of solid and liquid samples without sample preparation, making it useful for high throughput …
Calorimetric Analysis Using Dna Thermal Stability To Determine Protein Concentration, Matthew W. Eskew, Patrick Reardon, Albert S. Benight
Calorimetric Analysis Using Dna Thermal Stability To Determine Protein Concentration, Matthew W. Eskew, Patrick Reardon, Albert S. Benight
Chemistry Faculty Publications and Presentations
It was recently reported for two globular proteins and a short DNA hairpin in NaCl buffer that values of the transition heat capacities, Cp,DNA and Cp,PRO for equal concentrations (mg/mL) of DNA and proteins, are essentially equivalent (differ by less than 1%). Additional evidence for this equivalence is presented that reveals this phenomenon does not depend on DNA sequence, buffer salt, or Tm. Sequences of two DNA hairpins were designed to confer a near 20°C difference in their Tm’s. For the molecules, in NaCl and CsCl buffer the evaluated Cp,PRO and C …
Oxidative Stress In Health And Disease, V. Prakash Reddy
Oxidative Stress In Health And Disease, V. Prakash Reddy
Chemistry Faculty Research & Creative Works
Oxidative stress, resulting from the excessive intracellular accumulation of reactive oxygen species (ROS), reactive nitrogen species (RNS), and other free radical species, contributes to the onset and progression of various diseases, including diabetes, obesity, diabetic nephropathy, diabetic neuropathy, and neurological diseases, such as Alzheimer's disease (AD), amyotrophic lateral sclerosis (ALS), and Parkinson's disease (PD). Oxidative stress is also implicated in cardiovascular disease and cancer. Exacerbated oxidative stress leads to the accelerated formation of advanced glycation end products (AGEs), a complex mixture of crosslinked proteins and protein modifications. Relatively high levels of AGEs are generated in diabetes, obesity, AD, and other …
Cfa-Treated Mice Induce Hyperalgesia In Healthy Mice Via An Olfactory Mechanism, Yangmiao Zhang, Wentai Luo, Maryt M. Heinricher, Andrey E. Ryabinin
Cfa-Treated Mice Induce Hyperalgesia In Healthy Mice Via An Olfactory Mechanism, Yangmiao Zhang, Wentai Luo, Maryt M. Heinricher, Andrey E. Ryabinin
Chemistry Faculty Publications and Presentations
Background
Social interactions with subjects experiencing pain can increase nociceptive sensitivity in observers, even without direct physical contact. In previous experiments, extended indirect exposure to soiled bedding from mice with alcohol withdrawal-related hyperalgesia enhanced nociception in their conspecifics. This finding suggested that olfactory cues could be sufficient for nociceptive hypersensitivity in otherwise untreated animals (also known as “bystanders”).
Aim
The current study addressed this possibility using an inflammation-based hyperalgesia model and long- and short-term exposure paradigms in C57BL/6J mice.
Materials & Method
Adult male and female mice received intraplantar injection of complete Freund's adjuvant (CFA) and were used as stimulus …
Flexible And Sewable Electrode Based On Ni-Co@Pani-Salphen Composite-Coated On Textiles For Wearable Supercapacitor, Touba Rezaee Adriyani, Ali A. Ensafi, B. Rezaei
Flexible And Sewable Electrode Based On Ni-Co@Pani-Salphen Composite-Coated On Textiles For Wearable Supercapacitor, Touba Rezaee Adriyani, Ali A. Ensafi, B. Rezaei
Chemistry & Biochemistry Faculty Publications and Presentations
Flexible electrodes with high deformability and energy density are critical for electronic textiles. The key factor for achieving high-performance supercapacitors with superior power and energy density is the evaluation of materials that exhibit exceptional capacitive performance. Herein, we have prepared Ni-Co nanoparticles at the surface of polyaniline-salphen (Ni-Co@PS). Then, followed by casting Ni-Co@PS on a conductive carbon cloth (CC) as a substrate through a facile in-situ polymerization strategy. The morphologies of Ni-Co@PS composite were characterized by different methods such as FE-SEM, XPS, XRD, BET, and electrochemical methods. This nanocomposite showed high tolerability and a large surface area with excellent behavior …
Fabrication Process Independent And Robust Aggregation Of Detonation Nanodiamonds In Aqueous Media, Inga C. Kuschnerus, Haotian Wen, Xinrui Zeng, Yee Yee Khine, Juanfang Ruan, Chun Jen Su, U. Ser Jeng, Hugues A. Girard, Jean Charles Arnault, Eiji Ōsawa, Olga Shenderova, Vadym Mochalin, Ming Liu, Masahiro Nishikawa
Fabrication Process Independent And Robust Aggregation Of Detonation Nanodiamonds In Aqueous Media, Inga C. Kuschnerus, Haotian Wen, Xinrui Zeng, Yee Yee Khine, Juanfang Ruan, Chun Jen Su, U. Ser Jeng, Hugues A. Girard, Jean Charles Arnault, Eiji Ōsawa, Olga Shenderova, Vadym Mochalin, Ming Liu, Masahiro Nishikawa
Chemistry Faculty Research & Creative Works
In the past detonation nanodiamonds (DNDs), sized 3–5 nm, have been praised for their colloidal stability in aqueous media, thereby attracting vast interest in a wide range of applications including nanomedicine. More recent studies have challenged the consensus that DNDs are monodispersed after their fabrication process, with their aggregate formation dynamics poorly understood. Here we reveal that DNDs in aqueous solution, regardless of their post-synthesis de-agglomeration and purification methods, exhibit hierarchical aggregation structures consisting of chain-like and cluster aggregate morphologies. With a novel characterization approach combining machine learning with direct cryo-transmission electron microscopy and with X-ray scattering and vibrational spectroscopy, …
Modification Of Cellulose Fibers By Acyl Grafting For Oil Spill Remediation, Fatima Saif Alhumaidi
Modification Of Cellulose Fibers By Acyl Grafting For Oil Spill Remediation, Fatima Saif Alhumaidi
Theses
Oil spills represent a significant source of aquatic pollution with substantial repercussions on the environment as well as the economic and societal well-being of coastal communities. This research project is focused on the utilization of chemically modified cellulose-based fibers to remediate oil-contaminated water. The hydroxyl groups present in cellulose were acetylated under optimized conditions, thereby rendering the fibers hydrophobic and enhancing their affinity for crude oil. The modified cellulosic material was characterized by several physical and chemical techniques (IR, TGA, contact angle measurement, SEM, and back titration) to determine the extent of acylation and assess their morphological properties. The derivatized …
Confirmation Of N-Hexane As An Inert Co-Solvent In The Production Of Functionalized Silicon Nanoparticles From Reactive High-Energy Ball Milling, Julie P. Vanegas, Amanda Reusch, Mark J. Fink, Brian S. Mitchell
Confirmation Of N-Hexane As An Inert Co-Solvent In The Production Of Functionalized Silicon Nanoparticles From Reactive High-Energy Ball Milling, Julie P. Vanegas, Amanda Reusch, Mark J. Fink, Brian S. Mitchell
School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)
Alkanes such as n-hexane have been used as co-solvents in the production of functionalized semiconductor nanoparticles from alkenes and alkynes using Reactive High Energy Ball Milling (RHEBM) under the assumption that they are non-reactive under typical milling conditions. In this paper, we report on a comparative study with two hydrocarbon solvents of comparable chain length, 1-hexyne, and n-hexane, and their milling products using three different commercially available silicon precursors, namely single crystal silicon wafers and polycrystalline particles having a nominal size of 4 μm and 1 mm. We found that nanoparticle formation and surface functionalization in all the three silicon …
Controlling Guest Binding To Transition Metal Hosts Via Redox Stimuli, Jasmine S. Sanford
Controlling Guest Binding To Transition Metal Hosts Via Redox Stimuli, Jasmine S. Sanford
LSU Doctoral Dissertations
Several metal complexes were investigated as potential hosts to execute controllable host- guest interactions using a redox stimulus. Previously, our group has synthesized new CuII m-xylylenebis(pyridyltriazole) (m-xpt) hosts and their redox properties were analyzed. In Chapter 2, we take advantage of the CuII host’s ability to perform redox to investigate its interaction with chloride guest ions. This study was executed with two main Cu-xpt hosts: [Cu2(m- xpt)2(NO3)2](PF6)2 and [Cu2(m-xpt)2Cl2]Cl2. The host-guest interaction was analyzed with additions …
Phthalocyanines Prepared From 4,5-Dihexylthiophthalonitrile, A Popular Building Block, Derya Topkaya Taşkiran, Zeynel Şahi̇n, Ümi̇t İşci̇, Fabi̇enne Dumouli̇n
Phthalocyanines Prepared From 4,5-Dihexylthiophthalonitrile, A Popular Building Block, Derya Topkaya Taşkiran, Zeynel Şahi̇n, Ümi̇t İşci̇, Fabi̇enne Dumouli̇n
Turkish Journal of Chemistry
Phthalocyanines are tetrapyrrolic artificial porphyrinoids that play major roles in advanced biological and technological applications. Research on this family of dyes is particularly active in Türkiye, with many derivatives being prepared from 4,5-dihexyl-thiophthalonitrile DiSHexPN, which is one of the most popular noncommercially available building blocks for phthalocyanines. This review summarizes the phthalocyanines and their versatile properties and applications that have been published since 1994, when the synthesis of DiSHexPN was first described, to emphasize the importance of this building block in plentiful applications, all with bio-medical or technological impact.
Water-Soluble Phthalocyanine Photosensitizers For Photodynamic Therapy, İpek Ömeroğlu, Mahmut Durmuş
Water-Soluble Phthalocyanine Photosensitizers For Photodynamic Therapy, İpek Ömeroğlu, Mahmut Durmuş
Turkish Journal of Chemistry
Photodynamic therapy (PDT) is based on a photochemical reaction that is started when a photosensitizing process is activated by the light and results in the death of tumor cells. Solubility is crucial in PDT applications to investigate the physical and chemical characteristics of phthalocyanines, but, unfortunately, most phthalocyanines show limited solubility especially in water. To increase the solubility of phthalocyanines in polar solvents and water, ionic groups such as -SO3 - , -NR3 +, -COO- , and nonionic groups such as poly-oxy chains are frequently added to the peripheral or nonperipheral positions of the phthalocyanine framework. Since water-solubility and NIR-absorbing …
Electrochemical Dna Biosensors Developed For The Monitoring Of Biointeractions With Drugs: A Review, Kadri̇ye Arzum Erdem Gürsan, Muhammed Hüseyi̇n Şentürk, Esma Yildiz Göz, Meltem Maral, Ayla Yildirim, Ayşen Bozoğlu, Burak Kivrak, Nesli̇han Ceren Ay
Electrochemical Dna Biosensors Developed For The Monitoring Of Biointeractions With Drugs: A Review, Kadri̇ye Arzum Erdem Gürsan, Muhammed Hüseyi̇n Şentürk, Esma Yildiz Göz, Meltem Maral, Ayla Yildirim, Ayşen Bozoğlu, Burak Kivrak, Nesli̇han Ceren Ay
Turkish Journal of Chemistry
The interaction of drugs with DNA is important for the discovery of novel drug molecules and for understanding the therapeutic effects of drugs as well as the monitoring of side effects. For this reason, many studies have been carried out to investigate the interactions of drugs with nucleic acids. In recent years, a large number of studies have been performed to electrochemically detect drug-DNA interactions. The fast, sensitive, and accurate results of electrochemical techniques have resulted in a leading role for their implementation in this field. By means of electrochemical techniques, it is possible not only to demonstrate drug-DNA interactions …
Heterocyclic Molecules With Esipt Emission: Synthetic Approaches, Molecular Diversities, And Application Strategies, Nuretti̇n Mengeş
Heterocyclic Molecules With Esipt Emission: Synthetic Approaches, Molecular Diversities, And Application Strategies, Nuretti̇n Mengeş
Turkish Journal of Chemistry
Excited-state intramolecular proton transfer (ESIPT) is one of the most essential emission processes in most circumstances because of its dual emission band in most cases and its high Stokes shifts. These distinguishing properties make ESIPT-based probes more suitable for a variety of applications, including analyte sensors, solid-state sensing mechanisms, optical technologies, and biomarkers for endogenous or exogenous compounds in various settings. As a result, researchers around the world are working on ESIPT emissions and developing different scaffolds for various applications or industry demands. This field of study is rapidly expanding and there is a need for an up-to-date review of …
Cryogelation Reactions And Cryogels: Principles And Challenges, Oğuz Okay
Cryogelation Reactions And Cryogels: Principles And Challenges, Oğuz Okay
Turkish Journal of Chemistry
Cryogelation is a powerful technique for producing macroporous hydrogels called cryogels. Although cryogelation reactions and cryogels were discovered more than 70 years ago, they attracted significant interest only in the last 20 years mainly due to their extraordinary properties compared to the classical hydrogels such as a high toughness, almost complete squeezability, a mechanically stable porous structure with honeycomb arrangement, poroelasticity, and fast responsivity against external stimuli. In this mini review, general properties of cryogelation systems including the cryoconcentration phenomenon responsible for the unique properties of the cryogels are discussed. The squeezability and poroelasticity of cryogels comparable to those seen …
Comparative Study Of Electrochemical-Based Sensors And Immunosensors In Terms Of Advantageous Features For Detection Of Cancer Biomarkers, Göksu Özçeli̇kay, Ahmet Çeti̇nkaya, Sari̇ye İrem Kaya, Si̇bel Ayşil Özkan
Comparative Study Of Electrochemical-Based Sensors And Immunosensors In Terms Of Advantageous Features For Detection Of Cancer Biomarkers, Göksu Özçeli̇kay, Ahmet Çeti̇nkaya, Sari̇ye İrem Kaya, Si̇bel Ayşil Özkan
Turkish Journal of Chemistry
Cancer, becoming increasingly common globally, has a high mortality rate. Despite the much research on diagnosis and treatment methods, the benefits of technological developments, and newly developed sensor devices, cancer is still one of the leading causes of death worldwide. Early detection using powerful and noninvasive tools could be a future focus for prognosis and treatment follow-up. Therefore, electrochemical biosensors can be a strong choice for the detection of cancer biomarkers (such as alpha-fetoprotein, cytochrome c, prostate-specific antigen, myoglobin, carcinoembryonic antigen, alpha-fetoprotein, a cancer antigen, epidermal growth factor receptor, vascular endothelial growth factor, circulating tumor cell, and breast cancer antigen …
Fluid-Based Wearable Sensors: A Turning Point In Personalized Healthcare, Berfi̇n Vural, İnci̇ Uludağ, Bahar İnce, Canan Özyurt, Funda Öztürk, Mustafa Kemal Sezgi̇ntürk
Fluid-Based Wearable Sensors: A Turning Point In Personalized Healthcare, Berfi̇n Vural, İnci̇ Uludağ, Bahar İnce, Canan Özyurt, Funda Öztürk, Mustafa Kemal Sezgi̇ntürk
Turkish Journal of Chemistry
Nowadays, it has become very popular to develop wearable devices that can monitor biomarkers to analyze the health status of the human body more comprehensively and accurately. Wearable sensors, specially designed for home care services, show great promise with their ease of use, especially during pandemic periods. Scientists have conducted many innovative studies on new wearable sensors that can noninvasively and simultaneously monitor biochemical indicators in body fluids for disease prediction, diagnosis, and management. Using noninvasive electrochemical sensors, biomarkers can be detected in tears, saliva, perspiration, and skin interstitial fluid (ISF). In this review, biofluids used for noninvasive wearable sensor …
Green Catalyst For Clean Fuel Production Via Hydrodeoxygenation, Selva Bi̇lge Yücel, Yusuf Osman Donar, Samed Ergenekon, Beyza Özoylumlu, Ali̇ Sinağ
Green Catalyst For Clean Fuel Production Via Hydrodeoxygenation, Selva Bi̇lge Yücel, Yusuf Osman Donar, Samed Ergenekon, Beyza Özoylumlu, Ali̇ Sinağ
Turkish Journal of Chemistry
The development of new fuel sources to replace nonrenewable fossil fuels has received substantial attention due to the ongoing demand for fossil fuels. Biomass and raw waste materials are crucial sources to produce suitable alternative fuels instead of nonrenewable fuels and offer a greener approach. Therefore, improving the fuel properties of biooils produced from the thermochemical conversion of biomass and raw waste materials is critical as it is used as an alternative to nonrenewable fuel. Developing an economical and eco-friendly method to produce sustainable and renewable oil by improving biooil containing large amounts of phenolic compounds has become imperative. One …
Arsenic Speciation By Using Emerging Sample Preparation Techniques: A Review, Muhammad Saqaf Jagirani, Mustafa Soylak
Arsenic Speciation By Using Emerging Sample Preparation Techniques: A Review, Muhammad Saqaf Jagirani, Mustafa Soylak
Turkish Journal of Chemistry
Arsenic is a hazardous element that causes environmental pollution. Due to its toxicological effects, it is crucial to quantify and minimize the hazardous impact on the ecology. Despite the significant advances in analytical techniques, sample preparation is still crucial for determining target analytes in complex matrices. Several factors affect the direct analysis, such as trace-level analysis, advanced regulatory requirements, complexity of sample matrices, and incompatible with analytical instrumentation. Along with the development in the sample preparation process, microextraction methods play an essential role in the sample preparation process. Microextraction techniques (METs) are the newest green approach that replaces traditional sample …
Influence Of Soft Segment Structure, Hydrogen Bonding, And Diisocyanate Symmetry On Morphology And Properties Of Segmented Thermoplastic Polyurethanes And Polyureas, Emel Yilgör, İskender Yilgör
Influence Of Soft Segment Structure, Hydrogen Bonding, And Diisocyanate Symmetry On Morphology And Properties Of Segmented Thermoplastic Polyurethanes And Polyureas, Emel Yilgör, İskender Yilgör
Turkish Journal of Chemistry
A comprehensive review of the structure-morphology-property relations in segmented thermoplastic polyurethanes and polyureas (TPU) is provided. Special emphasis is given to the influence of the soft segment structure, polarity, and molecular weight, diisocyanate symmetry and the nature, extent, and strength of hydrogen bonding on the morphology and thermal and mechanical properties of TPUs. Experimental results obtained on composition-dependent TPU morphology and properties by various techniques were also compared by the morphology profiles generated by computational methods such as quantum mechanical calculations and molecular dynamics simulations
Metal-Organic Frameworks As Photocatalysts In Energetic And Environmental Applications, Eli̇f Özcan, Zeli̇ha Mermer, Yunus Zorlu
Metal-Organic Frameworks As Photocatalysts In Energetic And Environmental Applications, Eli̇f Özcan, Zeli̇ha Mermer, Yunus Zorlu
Turkish Journal of Chemistry
Metal-organic frameworks (MOFs) are an exciting new class of porous materials with great potential for photocatalytic applications in the environmental and energy sectors. MOFs provide significant advantages over more traditional materials when used as photocatalysts due to their high surface area, adaptable topologies, and functional ability. In this article, we summarize current developments in the use of MOFs as photocatalysts for a variety of applications, such as CO2 reduction, water splitting, pollutant degradation, and hydrogen production. We discuss the fundamental properties of MOFs that make them ideal for photocatalytic applications, as well as strategies for improving their performance. The opportunities …
Determination Of Ketamine Using Melamine-Modified Gold Nanoparticles, Güler Güneş, Zi̇ya Can, Ayşem Arda, Mustafa Reşat Apak
Determination Of Ketamine Using Melamine-Modified Gold Nanoparticles, Güler Güneş, Zi̇ya Can, Ayşem Arda, Mustafa Reşat Apak
Turkish Journal of Chemistry
Ketamine is used in medicine because of its anaesthetic and antidepressant effects at low doses. Unfortunately, due to its narcotic effect when used at high doses, its abuse among young people is increasing. It is also one of the most common drugs used in rape. Therefore, there is a need for fast and inexpensive tests that can be performed on-site. With the advancement of nanotechnology, nanoparticle-based approaches have found their place in selective analyses as in many fields. In the developed method, firstly gold nanoparticles were modified with melamine (AuNPs@Mel). Under optimized conditions, hydrogen bonds formed between ketamine and AuNPs@Mel …
Combination Of Smartphone Digital Image Colorimetry And Uv-Vis Spectrophotometry As Detection Systems With Solidified Floating Organic Drop Microextraction As Preconcentration Method For The Quantification Of Methyl Red In Wastewater Samples, Mi̇ray Bombom, Ayça Gi̇rgi̇n, Buse Tuğba Zaman, Fatma Turak, Sezgi̇n Bakirdere
Combination Of Smartphone Digital Image Colorimetry And Uv-Vis Spectrophotometry As Detection Systems With Solidified Floating Organic Drop Microextraction As Preconcentration Method For The Quantification Of Methyl Red In Wastewater Samples, Mi̇ray Bombom, Ayça Gi̇rgi̇n, Buse Tuğba Zaman, Fatma Turak, Sezgi̇n Bakirdere
Turkish Journal of Chemistry
In this study, a portable smartphone-based digital image colorimetric system (SDIC) was designed and integrated with a solidified floating organic drop microextraction method (SFODME) for the quantification of methyl red in textile wastewater samples. The RGB (red, green, and blue) data were evaluated for each captured image, and the green channel was selected for quantification due to its linear response for the analyte. Under optimal conditions, an acceptable linear range was recorded for the analyte. The proposed method recorded a limit of detection (LOD) value of 0.046 mg/L. The developed microextraction method was also combined with UVVis spectrophotometry, which recorded …
Sonophotochemical And Photochemical Efficiency Of Thiazole-Containing Metal Phthalocyanines And Their Gold Nanoconjugates, Nazli Farajzadeh, Hacer Yasemi̇n Yeni̇lmez, Göknur Yaşa Atmaca, Ali̇ Erdoğmuş, Zehra Bayir
Sonophotochemical And Photochemical Efficiency Of Thiazole-Containing Metal Phthalocyanines And Their Gold Nanoconjugates, Nazli Farajzadeh, Hacer Yasemi̇n Yeni̇lmez, Göknur Yaşa Atmaca, Ali̇ Erdoğmuş, Zehra Bayir
Turkish Journal of Chemistry
This study presents the synthesis of some metal {M = Zn(II), Lu(III), Si(IV)} phthalocyanines bearing chlorine and 2-(4-methylthiazol-5-yl) ethoxy groups at peripheral or axial positions. The newly synthesized metal phthalocyanines were characterized by applying FT-IR, 1 H NMR, mass, and UV-Vis spectroscopic approaches. Additionally, the surface of gold nanoparticles was modified with zinc(II) and silicon(IV) phthalocyanines. The resultant nanoconjugates were characterized using TEM images. Moreover, the effect of metal ions and position of substituent, and gold nanoparticles on the photochemical and sonophotochemical properties of the studied phthalocyanines was investigated. The highest singlet oxygen quantum yield was obtained for the lutetium …
Synthesis Of New Imine-/Amine-Bearing Imidazo[1,2-A]Pyrimidine Derivatives And Screening Of Their Cytotoxic Activity, Tuğba Güngör, Hazal Nazlican Atalay, Yakup Berkay Yilmaz, Tuğba Tümer, Mehmet Ay
Synthesis Of New Imine-/Amine-Bearing Imidazo[1,2-A]Pyrimidine Derivatives And Screening Of Their Cytotoxic Activity, Tuğba Güngör, Hazal Nazlican Atalay, Yakup Berkay Yilmaz, Tuğba Tümer, Mehmet Ay
Turkish Journal of Chemistry
Imidazo[1,2-a]pyrimidine derivatives bearing imine groups (3a-e) were successfully synthesized in moderate to good yields using microwave-assisted heating. Corresponding amine derivatives (4a-e) were also obtained by the reduction reaction of the imine derivatives (3a-e). All synthesized products were characterized by FT-IR, 1 H NMR, 13C NMR, and LC-MS spectroscopic techniques. In silico ADMET, Lipinski, and drug-likeness studies of the compounds were conducted and all were found to be suitable drug candidates. The cytotoxicity of the potential drug molecules was screened against the breast cancer cell lines MCF-7 and MDA-MB-231 and the healthy model HUVEC by the sulforhodamine B method. According to …
Ph-Responsive Intermediary Layer Cross-Linked Micelles From Zwitterionic Triblock Copolymers And Investigation Of Their Drug-Release Behaviors, Agung Ari Wibowo, Vural Bütün
Ph-Responsive Intermediary Layer Cross-Linked Micelles From Zwitterionic Triblock Copolymers And Investigation Of Their Drug-Release Behaviors, Agung Ari Wibowo, Vural Bütün
Turkish Journal of Chemistry
ABC-type triblock copolymers, namely poly[(ethylene glycol)methyl ether]-block-poly(tert-butyl methacrylate)-block-poly[2-N-(diisopropylamino)ethyl methacrylate] (MPEG-b-PBuMA-b-PDPA), were first synthesized and then the middle blocks were successfully converted into poly(methacrylic acid) to obtain MPEG-b-PMAA-b-PDPA zwitterionic triblock copolymers. These block copolymers were soluble in water and formed micellar aggregates with complex cores via hydrogen bonding interactions between MPEG and PMAA blocks below pH 4.0. When the pH was between 5.0 and 7.0, due to charge compensation between partially protonated PDPA and partially ionized PMAA blocks, micelles with polyion complex cores were observed. If the solution pH was above 8.0, deprotonation of tertiary amine groups provided a hydrophobic character …
Homoprotocatechuate Dioxygenase Active Site: Imitating The Secondary Sphere Base Via Computational Design, Muhammed Buyuktemiz, Yavuz Dede
Homoprotocatechuate Dioxygenase Active Site: Imitating The Secondary Sphere Base Via Computational Design, Muhammed Buyuktemiz, Yavuz Dede
Turkish Journal of Chemistry
Oxidative ring cleavage reactions have attracted great interest and various studies on the catechol ring-cleaving enzyme homoprotocatechuate dioxygenase (HPCD) have been reported in the literature. The available data on how the proton transfer takes place led us to design a potential HPCD model structure. A secondary sphere effect of utmost importance, the assistance of His200, which is critical for the catechol proton to migrate to dioxygen, was cautiously included on the first coordination shell. This was done mainly by modifying the axial ligands in the first coordination shell of HPCD such that the dual basic/acidic role in the proton transfer …
Cibacron Blue F3ga Ligand Dye-Based Magnetic Silica Particles For The Albumin Purification, Nurhak Tatar, Semra Akgönüllü, Handan Yavuz Alagöz, Adi̇l Deni̇zli̇
Cibacron Blue F3ga Ligand Dye-Based Magnetic Silica Particles For The Albumin Purification, Nurhak Tatar, Semra Akgönüllü, Handan Yavuz Alagöz, Adi̇l Deni̇zli̇
Turkish Journal of Chemistry
Dye-ligand affinity chromatography is among the increasingly popular affinity chromatography based on molecular recognition for the purification of albumin. This study focuses on the binding of Cibacron Blue F3GA ligand dye with magnetic silica particles and purification by separation. Mono-disperse silica particles with bimodal pore size distribution were employed as a high-performance adsorbent for human serum albumin (HSA) protein purification under equilibrium conditions. The synthesized ligand-dye affinity based magnetic silica particles were characterized by electron spin resonance, Fourier-transform infrared spectroscopy, scanning electron microscopy, vibrating sample magnetometer, elemental analysis, and dispersive X-ray analysis. The HSA purification performance of the proposed material …
Advanced Tetra Amino (Ata-100) Cobalt(Ii) Phthalocyanine-Based Metallo-Covalent Organic Polymer For Sensitively Detecting Volatile Organic Compounds, Günseli̇ Güney, Gülay Altindemi̇r Kaplan, Ci̇hat Taşaltin, İlke Gürol
Advanced Tetra Amino (Ata-100) Cobalt(Ii) Phthalocyanine-Based Metallo-Covalent Organic Polymer For Sensitively Detecting Volatile Organic Compounds, Günseli̇ Güney, Gülay Altindemi̇r Kaplan, Ci̇hat Taşaltin, İlke Gürol
Turkish Journal of Chemistry
The synthesis and characterization of a novel covalent organic polymer cobalt (II) phthalocyanine (ATA-100) including tetra amino group is described for the first time. This covalent organic polymer (COP) is characterized by FTIR, TGA, RAMAN, PXRD, and SEM-EDS. The developed sensor is tested for acetone, ethyl butyrate, n-hexane, chloroform, and n-butyraldehyde in a range of 80-10,900 ppm. ATA-100 showed the highest sensitivity for ethyl butyrate. The results have confirmed the possibility of utilizing ATA-100 COP-based surface acoustic wave (SAW) sensors for a wide variety of applications, including indoor air quality and environmental monitoring of volatile organic compounds (VOCs).
The Chemical And Electrochemical Stimuli Viologen Substituted Phthalocyanine With Tunable Optical Features1, Özge Di̇lara Ateş, Gülenay Tunç, Ahmet Şenocak, Burcu Dedeoğlu, Mehmet Menaf Ayhan, Ayşe Gül Gürek
The Chemical And Electrochemical Stimuli Viologen Substituted Phthalocyanine With Tunable Optical Features1, Özge Di̇lara Ateş, Gülenay Tunç, Ahmet Şenocak, Burcu Dedeoğlu, Mehmet Menaf Ayhan, Ayşe Gül Gürek
Turkish Journal of Chemistry
In this study, viologen-tetrasubstituted Zn(II) phthalocyanines (PcV1 and PcV2) were designed and synthesized to achieve the tunable optical features via redox-active viologen groups. Several parameters relevant to the evaluation of the tunable optical features have been investigated: UV-Vis, cyclic voltammetry (CV), EPR, square wave voltammetry (SWV), and theoretical analyses. The results showed that upon reductions and oxidations of viologen groups either chemically or electrochemically, the optical features of PcV1 and PcV2 change drastically with switchable processes. These outcomes indicate that achieving control over optical features of large organic chromophores such as Pc with our rational design can be used for …