Digital Commons Network^™

Acoustic Energy For Use In Mass Spectrometry, Ashton N. Taylor

USF Tampa Graduate Theses and Dissertations

Analyzing lipid assemblies, including synthetically produced liposomes and naturally produced extracellular vesicles (EVs), is challenging due to their size, diverse composition, and tendency to aggregate. EVs contain a complex variety of lipids, proteins, and other metabolites. EVs composition can provide us insight into what is happening inside the body and a subcellular level and have potential for noninvasive biomarkers. Liposomes are vesicles that form with a simple phospholipid bilayer membrane and play important roles in drug delivery systems. The use of mass spectrometry (MS) allows for broad analysis of lipids from different classes but their release from the higher order …

Synthesis And Characterization Of Water Soluble Thiosemicarbazone-Alkylthiocarbamate Ligands And Their Cu(Ii) Complexes, John J. Garvey Iv, Sanjit Karki, Haixun Guo, Levi J. Beverly, Craig A. Grapperhaus, Robert M. Buchanan

The Cardinal Edge

Thiosemicarbazone-alkylthiocarbamate N₂S₂ hybrid ligands are emerging as an important class of potential bioactive molecules that possess important pharmacokinetic properties. Resulting metal complexes have electronic properties that are composites of their homolog forms, bis-thiosemicarbazones and bis-alkylthiocarbamates, allowing for tuning redox potentials over a nearly 450 mV range. These versatile ligand frameworks possess remarkable antiproliferation activity against a broad range of solid tumors and low toxicity towards normal cells¹ indicating great promise for future drug development. Herein, we describe recent synthetic efforts to improve water solubility of thiosemicarbazone-alkylthiocarbamate hybrid ligand Cu(II) complexes. The parent 4-methyl-3-thiosemicarbazide half arm was …

Studying Organic Chemistry Students’ Scientific Modeling Practices Through A Semi-Structured Interview, Daniel Mays, Morgan Balabanoff

The Cardinal Edge

Many areas of natural science deal with unobservable phenomena. Scientists develop and use models to make sense of these aspects of nature. Chemistry is certainly no exception – in fact, given the molecular nature of chemical interactions, the modern understanding of chemistry is largely based on well-established scientific models. Because models are so important in chemistry, understanding how students develop and use models in the learning process stands to offer key insights into how to better teach chemistry. This project is focused on exploring how students of organic chemistry develop and use scientific models to predict the outcome of reactions. …

Investigating Factors Influencing Science Student Retention, Hayley Benson, Morgan Balabanoff

The Cardinal Edge

Retention in and across STEM degrees has been a significant problem across institutions. By the time students have reached their third year, the University of Louisville has lost over 50% of the students who entered as first-year students.

The main objective of this study is to investigate variables such as sense of belonging, student’s mindset, and science identity and their relationship with retention in STEM degrees. While many studies have identified gaps among student groups across these variables, few studies have generated solutions to address these gaps. Further, the proposed solutions are often from the viewpoint of researchers and upper …

Investigating The Role Of Tetherin Protein In Multivesicular Bodies Fusions In Lung Cancer Cells, Md. Rakib Miah

Electronic Theses and Dissertations

Cells rely on the secretion of exosomes to communicate with one another and this process is potentially mediated by a protein called tetherin, which anchors exosomes to the cell surface to limit their spread. Tetherin protein has attracted a lot of attention because of its capacity to hinder the propagation of viruses by attaching virions to the surface of host cells. Treatment with interferon-alpha (IFNα) increases the production of tetherin, although it is not known how this affects tetherin localization and exosome-mediated communication. This thesis looks at how the expression of tetherin, which IFNα boosts, affects the dynamics of intercellular …

Potential Cell Preservation In Mars-Relevant Clay Minerals, Hanford Gerille Gonzales, Leena M. Cycil, Elisabeth Hausrath

Undergraduate Research Symposium Posters

This study investigates the potential of Fe-nontronite, a clay mineral found on Mars, to preserve biological cells and retain biosignatures such as trace metals. The research explores the preservation potential of nontronite by reacting it with cells under the following conditions: 1) reacting cells with nontronite precursors at low temperature and 2) reacting cells with the already synthesized nontronite made at high temperature. Microbial species Shewanella oneidensis and Geobacter metallireducens, known for their relevance to iron-rich environments, were introduced in intact and lysed forms to assess their interactions with each condition of nontronite. Preliminary results from scanning electron microscopy (SEM) …

Chemical And Structural Design Of Single Molecule Switches, Elaina Grogg

Longwood Senior Thesis Proposal

No abstract provided.

Corrosion Behavior Of 304 Stainless Steel In H2so4/Nacl In The Absence And Presence Of Molybdate And Tungstate, Asma Yousef Alkaabi

Thesis/ Dissertation Defenses

In this study, the corrosion behavior of 304 austenitic stainless steel was investigated in H₂SO₄ solutions, H₂SO₄ as a function of Cl^- ions concentration, H₂SO₄ as a function of MoO₄^2- ions concentration, and H₂SO₄ + Cl^- ions as a function of MoO₄^2- ions concentration. Moreover, the synergistic inhibition of MoO₄^2- and WO₄^2- ions was investigated in 0.1 M H₂SO₄, with the solution pH adjusted to 3.0. The findings show that the corrosion current density …

Ptsd Increases Risk For Hypertension Development Through Pvn Activation And Vascular Dysfunction In Sprague Dawley Rats, Xinqian Chen, Xin Yan, Chunxiu Yu, Qing-Hui Chen, Lanrong Bi, Zhiying Shan

Michigan Tech Publications

This study investigates the impact of single prolonged stress (SPS), a model of post-traumatic stress disorder (PTSD), on cardiovascular responses, hypothalamic paraventricular nucleus (PVN) activity, and vascular function to elucidate the mechanisms linking traumatic stress to hypertension. Although SPS did not directly cause chronic hypertension in male Sprague Dawley (SD) rats, it induced acute but transient increases in blood pressure and heart rate and significantly altered the expression of hypertension-associated genes, such as vasopressin, angiotensin II type 1 receptor (AT1R), and FOSL1 in the PVN. Notably, mitochondrial reactive oxygen species (mtROS) were predominantly elevated in the pre-autonomic regions of the …

Novel Nanocomposite Of Carbonized Chitosan-Zinc Oxide-Magnetite For Adsorption Of Toxic Elements From Aqueous Solutions, Dalia A. Ali Eng, Ganna Gaber Ismail Eng.

Chemical Engineering

Herein, a novel nanocomposite (carbonized chitosan-zinc oxide-magnetite, CCZF) was developed to effectively remove toxic elements in water remediation. Combining the high adsorption capacities of chitosan with the magnetic properties of magnetite and the chemical stability of zinc oxide, the combination of these unique properties makes it an efficient and versatile material that offers a sustainable solution for water purification. The (CCZF) nanocomposite was synthesized through the coprecipitation method and characterized using various techniques, including scanning electron microscopy (SEM), transmission electron microscopy (TEM), Brunauer–Emmett–Teller (BET) analysis, X-ray diffraction (XRD), Fourier transform infrared (FTIR) spectroscopy, and zeta potential analysis. The results showed …

Inactivation Of Bacteria Using Synergistic Hydrogen Peroxide With Split-Dose Nanosecond Pulsed Electric Field Exposures., Zachary Rosenzweig, Jerrick Garcia, Gary L Thompson, Lark Perez

College of Science & Mathematics Departmental Research

The use of pulsed electric fields (PEF) as a nonthermal technology for the decontamination of foods is of growing interest. This study aimed to enhance the inactivation of Escherichia coli, Listeria innocua, and Salmonella enterica in Gomori buffer using a combination of nsPEF and hydrogen peroxide (H2O2). Three sub-MIC concentrations (0.1, 0.3, and 0.5%) of H2O2 and various contact times ranging from 5-45 min were tested. PEF exposures as both single (1000 pulse) and split-dose (500+500 pulse) trains were delivered via square-wave, monopolar, 600 ns pulses at 21 kV/cm and 10 Hz. We demonstrate that >5 log CFU/mL reduction can …

Ionic Nanomedicines And Biocompatible Hydrogel: Synthesis, Characterization And Application In Cancer And Drug Delivery, Mujeebat Bashiru

Theses and Dissertations

This dissertation is focused on the development of novel class of ionic materials (IMs), and ionic nanomedicines (INMs) for cancer treatment. These IMs are composed of two therapeutics combined via electrostatic attraction. The impact of various counterions on the drug’s cytotoxic and photophysical properties are unveiled. Moreover, the mechanism of internalization, enhanced toxicity of these materials is investigated by determining their cellular uptake, subcellular localization, and cell death mechanism. Furthermore, the in vivo bioimaging capabilities of the drugs is investigated to validate their potential for clinical relevance. The second part of this dissertation is focused on the synthesis of biocompatible …

Battle Of The Ch Motions: Aliphatic Vs Aromatic Contributions To Astronomical Pah Emission And Exploration Of The Aliphatic, Aromatic, And Ethynyl Ch Stretches, Vincent J. Esposito, Salma Bejaoui, Brant E. Billinghurst, Christiaan Boersma, Ryan C. Fortenberry, Farid Salama

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Strong anharmonic coupling between vibrational states in polycyclic aromatic hydrocarbons (PAH) produces highly mixed vibrational transitions that challenge the current understanding of the nature of the astronomical mid-infrared PAH emission bands. Traditionally, PAH emission bands have been characterized as either aromatic or aliphatic, and this assignment is used to determine the fraction of aliphatic carbon in astronomical sources. In reality, each of the transitions previously utilized for such an attribution is highly mixed with contributions from both aliphatic and aromatic CH motions as well as non-CH motions such as CC stretches. High-resolution gas-phase IR absorption measurements of the spectra of …

Editorial: Leveraging Multi-Omics Approaches To Understand And Manage Gastrointestinal And Hepatic Diseases, Isis Trujillo-Gonzalez, Paul G. Thomes, Isin Tuna Sakallioglu, Kusum K. Kharbanda

Department of Chemistry: Faculty Publications

The Research Topic “Leveraging multi-omics approaches to understand and manage gastrointestinal and hepatic diseases” proposed by the Frontiers in Pharmacology has attracted a total of four articles on preclinical studies that were covered in three original research manuscripts and one review article. Two research articles were on metabolic dysfunction-associated steatotic liver disease (MASLD), previously named non-alcoholic fatty liver disease (NAFLD), which is now recognized as a predominant cause of chronic liver disease worldwide, affecting over 30% of the adult population (Teng et al., 2023; Miao et al., 2024). Current pharmacological treatments for MASLD are limited and, until a recent FDA-approved …

Electronic Relaxation Pathways In Thio-Acridone And Thio-Coumarin: Two Heavy-Atom-Free Photosensitizers Absorbing Visible Light, Chris Acquah, Sean Hoehn, Sarah Krul, Sourav Kanti Seth, Eric Lee, Carlos E. Crespo-Hernández

Faculty Scholarship

Heavy-atom-free photosensitizers (HAF-PSs) have emerged as a new class of photosensitizers aiming to broaden their applicability and versatility across various fields of the photodynamic therapy of cancers. The strategy involves replacing the exocyclic oxygen atoms of the carbonyl groups of established biocompatible organic fluorophores with sulfur, thereby bathochromically shifting their absorption spectra and enhancing their intersystem crossing efficiencies. Despite these advancements, the photophysical attributes and electronic relaxation mechanisms of many of these HAF-PSs remain inadequately elucidated. In this study, we investigate the excited state dynamics and photochemical properties of two promising HAF-PSs, thio-coumarin and thio-acridone. Employing a combination of steady-state …

Teaching With Pedagogy And Empathy, Mamoona Muzammil, Muzammil Arshad, Washain Muzammil

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Mental illness is common and can affect anyone. Each year the University welcomes students with Mental Health Issues. One in four adults in the US will experience a mental illness in their lifetime, however according to a NUS survey, eight out of ten students will experience a mental illness while in higher education. For some student’s mental illness can be a lifelong disability. Others can experience short term issues that emerge around difficult or stressful life events, while some students may be more at risk of experiencing mental illness in relation to their ethnicity, gender, sexuality or socio-economic background. Although …

Comparison Of Efficient Deep Learning Architectures For Lactobacillus Species Identification, Dea Aisyah Rusmawati, Ishak Ariawan, Afrinal Firmanda

Karbala International Journal of Modern Science

Identifying microorganism species, such as Lactobacillus, is essential in ensuring the food products' quality and safety. Traditional laboratory practice requires expert knowledge and experience, but the method is expensive and time-consuming due to complex sample preparation. Faster, more accurate, and cheaper computational methods, such as transfer learning technology, are needed for the Lactobacillus species classification. The technique has been effective in a variety of image recognition contexts. Deep learning architecture can also be applied as an innovative strategy for digital image-based identification. Therefore, this research aims to compare several deep-learning architectures in classifying bacterial strains of Lactobacillus. The four architectures …

Investigating The Learning Goals And Expectations Of Laboratory Coordinators, Graduate Teaching Assistants, And Students In General And Organic Chemistry Laboratory Courses, Elizabeth Blanche Vaughan, A. Montoya-Cowan, Christine Kim, Alexandra Stephens, Osie Hamilton, Jack Barbera

Chemistry Faculty Publications and Presentations

As chemistry education researchers and practitioners continue to investigate and improve undergraduate laboratory courses, it is necessary to consider the perspectives held by each of the stakeholders who are directly involved in these courses, including laboratory coordinators, graduate teaching assistants, and students. This study sought to qualitatively investigate the learning goals and expectations held by laboratory coordinators, graduate teaching assistants (GTAs), and students for general and organic chemistry laboratory courses at a single institution. This was completed through the collection and analysis of semistructured interview data from laboratory coordinators and GTAs and open-ended written responses from students. Results indicated that …

Boosting The Power Performance Of Microbial Fuel Cells By Using Dual Nanomaterial-Modified Carbon Felt Electrodes, Krishna Thapa, Wenyan Liu, Yuwei Zhang, David J. Westenberg, Yishu Zhou, Risheng Wang

Chemistry Faculty Research & Creative Works

Innovative design enhancements to microbial fuel cells (MFCs) are pivotal for improving their viability as renewable energy sources. This study introduces a dual approach to electrode modification, integrating polyaniline (PANI) and gold nanoparticles (AuNPs) on carbon felt (CF) anodes coupled with a unique cathode composed of DNA origami and chitosan. The synergistic effect of PANI and AuNPs significantly increases the hydrophilicity and conductivity of the anode, leading to a considerable surge in power density. Concurrently, the biocompatible DNA origami and chitosan-functionalized cathode facilitates efficient electron transfer without relying on conventional catalysts. Together, these modifications yield a 52.42% increase in the …

Physiochemical Characterization And In-Vitro Investigation Of The Effect Of Commercial And Novel Non-Digestible Fiber/Prebiotics On The Growth Of Probiotics, Shaikha Salem Al Ameri

Thesis/ Dissertation Defenses

Probiotics and prebiotics play a major role in enhancing the gut microbiota and, consequently, human health. Non-digestible dietary fibers (prebiotics) are selectively fermented and induce specific changes in the composition and/or activity of the gastrointestinal microbiota (probiotics), thus conferring benefit(s) upon the host's health. The consumption of prebiotic products has been extended from diet supplementation to clinical application in various health complications, emerging as a potential therapeutic to manipulate several diseases. Different pharmaceutical companies normally use a blend of many fibers from various sources to prepare commercial prebiotic products. Currently, no data is available to what extent the components of …

Polymorphism Control Of Polyethylene Terephthalate (Pet) Degradation Product Via Mechanochemistry Leads To Accelerated Microbial Degradation, Deepika Shingwekar, Nicholas Lutz, Delbert S. Botes, Elani J. Cabrera-Vega, Gonzalo Campillo-Alvarado, Jay L. Mellies, Jesus Daniel Loya

Chemistry Faculty Publications and Presentations

Here, we optimized a chemo-microbial degradation of polyethylene terephthalate. Developed a path to mechanochemically interconvert between BHET polymorphs and established that BHET polymorphism influences bacterial biodegradation rate.

Classification Manner Utilizing Electroencephalography Signals To Investigate Waveforms, Wessam Al-Salman, Ali Basim Al-Khafaji, Mishall Al-Zubaidie

Karbala International Journal of Modern Science

Waveform detection has been an area of continuous investigation for many years. One important waveform in sleep stage 2 is the k-complex. Numerous researchers have created various strategies for auto-k-complex detection; some of these strategies state that the automated detection techniques are adequate. Because of its analytically relevant resolution, the Electroencephalogram (EEG) is a commonly utilized technique to analyze the k-complexes in order to understand the nervous system activity of the brain. Several researchers have classified waveforms using EEGs in a variety of ways. It appears that the majority of the waveform detection had limitations. The …

Bacterial Cellulose Production From Fermented Fruits And Vegetables Byproducts: A Comprehensive Study On Chemical And Morphological Properties, Yati Maryati, Hakiki Melanie, Windri Handayani, Yasman Yasman

Karbala International Journal of Modern Science

This study aimed to produce α-cellulose from Bacterial Cellulose SCOBY (BCS) using alternative substrates from fermented fruit and vegetable byproducts: katuk leaves (KT), kale leaves (KL), guava (JB), dragon fruit (NG), and banana (PS). BCS production involved juice extraction, SCOBY inoculation, and sucrose addition, followed by 21 days of fermentation. Initially, the NG medium had the highest concentration of Total Reducing Sugars (TRS), but all media showed a decline as sugars were consumed. Fermentation reduced pH and increased total polyphenols, with KL and JB showing the highest rise (0.13-0.15 mg GAE/mL). Flavonoid levels varied, decreasing in KL and PS but …

Metabolite Profiling Of Potential Fraction From Ethyl Acetate Extract Of Ziziphus Mauritiana Leaves By Lc-Ms/Ms Analysis, Nurhayati Bialangi, Weny Ja Musa, Boima Situmeang

Karbala International Journal of Modern Science

In Indonesia, the treatment with leaves as a traditional medicine is still firmly integrated into the community to overcome various health problems experienced, one of which is the treatment with Bidara leaves (Ziziphus mauritiana). Ziziphus mauritiana belongs to family of Rhamnaceae, and it is generally considered a potential source of antioxidant and cholesterol lowering. This study aimed to examine phytochemical characterization, antioxidant potential, and cholesterol-lowering effects of ethyl acetate fraction derived from Ziziphus mauritiana. Extraction was accomplished using ethyl acetate, and the resultant extract was fractionated through chromatography with a blend of n-hexane and ethyl acetate as …

Confocal Raman Spectroscopy Coupled With In Vitro Permeation Testing To Study The Effects Of Formalin Fixation On The Skin Barrier Function Of Reconstructed Human Epidermis, Hichem Kichou, Franck Bonnier, Amanda C. Caritá, Hugh Byrne, Igor Choupra, Emilie Munnier

Articles

Confocal Raman Spectroscopy is recognised as a potent tool for molecular characterisation of biological specimens. There is a growing demand for In Vitro Permeation Tests (IVPT) in the pharmaceutical and cosmetic areas, increasingly conducted using Reconstructed Human Epidermis (RHE) skin models. In this study, chemical fixation of RHE in 10% Neutral Buffered Formalin for 24 hours has been examined for storing RHE samples at 4°C for up to 21 days. Confocal Raman Spectroscopy, combined with Principal Components Analysis, revealed the molecular-level effects of fixation, notably in protein and lipid conformation within the stratum corneum and viable epidermis. IVPT by means …

Considerations For Method Development And Method Translation In Capillary Liquid Chromatography: A Tutorial, Samuel W. Foster, Christopher Piccolo, Eliza K. Hanson, James P. Grinias

College of Science & Mathematics Departmental Research

HPLC remains one of the most widely used measurement techniques for chemical analysis. Capillary LC, which utilizes narrow diameter columns operated at lower flow rates than analytical-scale LC, continues to gain adoption based on its reduced mobile phase consumption and increased sensitivity when coupled to MS detection. This tutorial offers practical insights into the most critical aspects of translating analytical-scale separations to the capillary scale. The selection of pumping systems, detectors, and the potential for performance loss due to extra-column effects are examined within the context of separations using columns with inner diameters ≤ 0.3 mm. Column choices within this …

Barren To Green In A Single Application: Revitalizing Brownfield Soil With Simulated Root Exudates, Bhagyashree P. Vaidya, Sarah E. Krisak, Jennifer Adams Krumins, Nina M. Goodey

Department of Chemistry and Biochemistry Faculty Scholarship and Creative Works

Barren, metal-contaminated soils lack plants and root exudate inputs, exhibit low microbial abundance and functioning, and often require soil revitalization to revegetate. While the effects of simulated root exudates (SRE) have been investigated in uncontaminated, vegetated soils, their potential for remediating post-industrial barren, contaminated soils has not been examined or leveraged. We asked whether priming brownfield soils with a laboratory-prepared SRE solution stimulates native soil microbial metabolism and functioning and how long the effects last. Moreover, we compared a cost-effective single SRE addition to repeated SRE additions. We collected soils from a metal-contaminated, abandoned industrial rail yard (barren and vegetated …

Refining Chlorosulfonation Methods For The Synthesis Of A Perfluoroalkyl Arylsulfonimide (Pfsi) Monomer, Ainsley P. Foster, Benjamin Varney, Hua Mei

Science University Research Symposium (SURS)

Proton-exchange membrane (PEM) fuel cells are sources of energy that are clean, quiet, and highly responsive to changes in power needs, making them promising for use in automobiles and other portable power devices. The electrolyte of a PEM cell–the layer responsible for conductivity–is a polymer membrane, commonly consisting of perfluoroalkyl sulfonic acid (PFSA) polymers. Perfluoroalkyl arylsulfonimide (PFSI) polymers are expected to improve the efficiency of PEM fuel cells through optimal stability and proton conductivity. The trifluovinylether (TFVE) aryl perfluorosulfonamide monomer is a new PFSI monomer proposed to fulfill these benefits once polymerized. A six-step synthesis route was initially designed to …

Syntheses And Crystal Structures Of The Imides 4-(2-Phenyl­Eth­Yl)- And 4-[2-(4-Hy­Droxy­Phen­Yl)Eth­Yl]-4-Aza­Tetra­Cyclo­[5.3.2.0,2,6.08,10]Dodec-11-Ene-3,5-Dione, Jonathan P. Bajko, Richard J. Staples, Shannon Biros

Open Access Publishing Support Funded Articles

The syntheses and characterization (NMR and XRD) of two substituted [2.2.2]bi­cyclo­octene ring systems are described here. The cyclo­hexene rings of these systems adopt a nearly perfect boat conformation according to analysis using Cremer–Pople parameters. Both structures contain a nearly planar imide ring that is oriented endo relative to a bridgehead cyclo­propyl ring. 4-(2-Phenyl­eth­yl)-4-aza­tetra­cyclo­[5.3.2.0^2,6.0^8,10]dodec-11-ene-3,5-dione, C₁₉H₁₉NO₂, is substituted with a phenylethyl group that hosts C—H⋯π inter­actions in the crystal. 4-[2-(4-Hy­droxy­phen­yl)eth­yl]-4-aza­tetra­cyclo­[5.3.2.0^2,6.0^8,10]dodec-11-ene-3,5-dione, C₁₉H₁₉NO₃, bears a 4-hy­droxy­phenylethyl group on the imide ring and contains O—H⋯O …

Targeted Study Of The Effect Of Yeast Strain On Volatile Compounds Produced In Sorghum Beer, Drew Budner, Joseph Carr, Brett Serafini, Samantha Tucker, Elisabeth Dieckman-Meyer, Lindsey Bell, Katherine A. Thompson-Witrick

Chemistry

An increase in the consumer demand and the availability of gluten-free products has led to several brewers investigating brewing with grains other than barley. The primary grain of choice has been sorghum. These new gluten-free beers have a unique flavor and aroma, which previous research has shown is the result of differences in concentration for key chemical compounds, including ethyl butyrate, butyl acetate, isoamyl acetate, ethyl caproate, hexyl acetate, 1-octanol, nonanal, ethyl octanoate, and ethyl decanoate. This study focused looked at the influence different strains of yeast had on the concentration of these key compounds. Beer was brewed using either …