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Generating And Sustaining Meaningful Professional Development Opportunities For Graduate Teaching Assistants Facilitating Course-Based Undergraduate Research Experiences In The Biological Sciences, Amie M. Kern

Open Access Theses & Dissertations

Current national efforts to reform postsecondary laboratory education have emphasized the incorporation of authentic research opportunities into science, technology, engineering, and mathematics (STEM) curricula. Within the last decade, course-based undergraduate research experiences (CUREs) have emerged as a viable mechanism to achieve this goal. Evidence within the biology education literature suggests that student engagement in CUREs has the potential to positively impact their development of scientific inquiry and process skills, content knowledge, and affect in the domain. While the majority of studies have focused on student outcomes, few studies have examined instructor outcomes in CURE learning environments. This is especially true …

Mathematical Modeling Of Potassium Modulated Viral Infection, Zaira Elizabeth Mather

Open Access Theses & Dissertations

In recent years, there is a growing interest in the investigation of using potassium to treat virus infections. In the region of infection, there is a biological observation of extracel- lular potassium level being typically very low whereas the intracellular potassium levels are much higher. There are numerous biological studies showing that elevated potassium levels in the extracellular membrane tends to block virus infections. A recent effort in this direction is a collaborative research conducted by mathematicians and biologists from the University of Texas at El Paso, New Mexico State University, and the University of New Mexico, where we develop …

Understanding The Anticancer Mechanism Of Oridonin Using Proteomics Approach, Xiaojun Zhang

Open Access Theses & Dissertations

Oridonin has attracted extensive attention from cancer biologists ascribed to its outstanding anticancer ability. It is a kaurane diterpene, the first bioactive natural compound from Rabdosia rubescens (Hemsl.) Hara, a natural herb. Oridonin is conventionally used as an anti-tumor, ani-inflammatory, antioxidant, and anti-bacterial compound as well as an adjunct treatment for many cancers, especially gastrointestinal tumors, such as esophageal and liver cancers. Its antitumor effects have been connected to its interference with several pathways involved in apoptosis, cell cycle arrest, cell proliferation, autophagy, and cell migration. Presently, both the molecular chaperone Hsp70 and Nucleolin have been identified as targets interacting …

Global Change Effects On Carbon Cycling In Terrestrial Ecosystems, Guopeng Liang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Since terrestrial ecosystems store approximately 3 times more carbon (C) than the atmosphere, they have a significant effect on the atmospheric CO₂ concentration. Although many studies have been conducted to determine global change effects on C cycling in terrestrial ecosystems, the underlying mechanisms remain uncertain. To address this knowledge gap, I utilized meta-analysis, laboratory experiments, and soil microbial community analysis.

In chapter 2, I conducted a meta-analysis to examine whether effects of long-term N addition on plant productivity can shift over time. I found that 44% of studies showed a marked trend (increase or decrease) in the strength of …

Greater Sage-Grouse Brood Responses To Livestock Grazing In Sagebrush Rangelands, Hailey Peatross Wayment

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The distribution and abundance of the greater sage-grouse (Centrocercus urophasianus; sage-grouse) have declined in the last 60 years. Range contractions and population declines have been attributed to loss and fragmentation of their sagebrush (Artemisia spp.) habitats. Grazing by livestock remains the predominant anthropogenic land-use across sagebrush ecosystems in North America, occurring on 87% of remaining sage-grouse habitat. Most of the peer-reviewed literature reports the potential for negative impacts of sagebrush reduction treatments, to increase livestock forage, on sage-grouse habitat. However, few studies have linked livestock grazing at the landscape level to vital rates (e.g., nest initiation rates, …

Impact Of Genetic Variation And Timescale On Diatom Salinity Stress Response, Kala M. Downey

Graduate Theses and Dissertations

Natural environments are dynamic, and organisms must sense and respond to changing conditions. One common way organisms deal with stressful environments is through gene expression changes, allowing for stress acclimation and resistance which occurs over varying time spans in different species. The recent evolutionary history of populations could greatly influence their ability to respond successfully. An evolutionary history in disturbed or fluctuating conditions could promote increased resistance or a more rapid response to these environmental stressors. To understand the impact of genotypic variation and timescales on response and acclimation to salinity changes, we have been exploiting the abilities of euryhaline …

Ciliate Endosymbiont Imaging Methodology, Aidan Boving, Roxanne Beinart

Senior Honors Projects

Ciliates, a phylum of diverse microbial eukaryotes, are found in a wide range of environments, including anoxia. Anaerobic ciliates host intracellular methanogenic archaea – a unique type of symbiosis. Despite their importance, anaerobic ciliates and their symbiotic relationships remain understudied. Included in this is the ability to image and quantify the intracellular methanogenic symbionts in a precise, timely and replicable procedure. This project aimed to improve the current fluorescence microscopy methodology used for endosymbiont quantification. The proposed method is intended for use with the Opera Phenix, a high throughput spinning disk confocal microscope which can count large amounts of individual …

Describing Bacterial Mutagenic Hotspots And Signatures Along With The Factors That Drive Them, Carmen Vallin

UNLV Theses, Dissertations, Professional Papers, and Capstones

In my dissertation work, I investigated bacterial mutagenesis. I asked: where do mutations occur in the bacterial genome? What types of mutations occur? What factors promote or prevent mutations? And lastly, how do the answers to these questions change depending on the bacterial life cycle (When)? I used Bacillus subtilis, a Gram-positive bacterium belonging to the phylum Firmicutes, and Escherichia coli, a Gram-negative bacterium belonging to the phylum Proteobacteria, to answer these questions. B. subtilis and E. coli are model systems that have been used to gain insights into fundamental processes of mutations and evolution for nearly ~8 decades. Here, …

Supertertiary Structural Dynamics Modulate Function In Postsynaptic Density Protein 95, George L. Hamilton Iii

All Dissertations

Proteins, RNA, and DNA serve as the primary sub-cellular machinery that give rise to the necessary functions of life. The long-standing paradigm has been that the structures of biomolecules, or the arrangement of the subunits that make up a biomolecule, determine biological function. However, biomolecules are not static objects. Instead, they often undergo structural rearrangements that are crucial to enabling and regulating their functions. In my thesis I present several studies of the interplay between the structures, dynamics, and functions of biomolecules that combine experimental fluorescence spectroscopy and computational methods to probe these systems at the single-molecule level. In particular, …

Transcriptome-Wide Identification Of Rna-Binding Protein Binding Sites Using Seclip-Seq, Steven M Blue, Brian A Yee, Gabriel A Pratt, Jasmine R Mueller, Samuel S Park, Alexander A Shishkin, Anne C Starner, Eric L Van Nostrand, Gene W Yeo

Faculty, Staff and Students Publications

Discovery of interaction sites between RNA-binding proteins (RBPs) and their RNA targets plays a critical role in enabling our understanding of how these RBPs control RNA processing and regulation. Cross-linking and immunoprecipitation (CLIP) provides a generalizable, transcriptome-wide method by which RBP/RNA complexes are purified and sequenced to identify sites of intermolecular contact. By simplifying technical challenges in prior CLIP methods and incorporating the generation of and quantitative comparison against size-matched input controls, the single-end enhanced CLIP (seCLIP) protocol allows for the profiling of these interactions with high resolution, efficiency and scalability. Here, we present a step-by-step guide to the seCLIP …

Contemporary Biomarker Strategies For Patients With Chest Pain, Stephen Boone, W Frank Peacock

Faculty, Staff and Students Publications

This review focuses on the strengths and limitations of conventional and high-sensitivity troponin in the evaluation of patients with suspected acute coronary syndromes. High-sensitivity troponin (hsTn) assays represent a significant innovation over prior generation troponin assays. Owing to superior analytical precision, hsTn permits more rapid "rule-in" and "rule-out" of myocardial infarction. Furthermore, hsTn assays, in properly implemented clinical pathways, permit a reduction in the portion of patients requiring extended observation and testing.

Mycobacteriosis Of Striped Bass (Morone Saxatilis) In Virginia Tributaries Of The Chesapeake Bay, Joshua S. Mcgilly

Biological Sciences Theses & Dissertations

Mycobacteriosis was first documented in Chesapeake Bay striped bass (Morone saxatilis) in 1997 after fish exhibited emaciation and skin lesions. Since it was first identified, studies of mycobacteriosis in the mainstem of the Chesapeake Bay (2003-2007) and the Rappahannock River (2005-2012) have shown high disease prevalence and disease-associated mortality. Until this study, no current prevalence data existed from the Rappahannock River, and no published prevalence data existed for the James River, leaving a gap in our understanding of this disease in major Chesapeake Bay tributaries. We began gathering mycobacteriosis prevalence data from an existing survey collecting striped bass …

The Effect Of Age On The Mating Call Of The Tungara Frog, Zaizhen Xu

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Growth, Sexual Dimorphism And Resource Allocation In The Túngara Frog, Kaitlyn D. Tonnu

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

What Is The Prevalence Of Dirofilaria Immitis (Dog Heartworm) In Invasive Aedes Mosquitoes?, Leen Yousef, Johan Espinoza Corrales, Daniela H. Dolar, Taylor K. Trieu, Aisha Popalzai, Agamchat Dhami

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Medial Edge Chondrification Of The Vocal Folds Of E. Pustulosus And Its Function In Sexual Selection, Helena Soon Czochanski

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

A Proteomic Analysis To Identify Changes In Bacterial Protein Expression Following Overexpression Of A Spider Silk Protein, Jamie (Ju Yeon) Park, Jaeyoung (Kate) Lee, David Chanyang Eum, Minji Jung, Sungkyung Lee

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Identifying Important Bacterial Proteins Involved In Synthesis Of Spider Silk Protein Masp1, Douglas Chan, Derek Chan, Angela Hung, Joochan Koo

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Halogen Bonding: A Computational Chemistry Investigation Of The Interaction Between Thyroid Hormone And Deiodinase, William Rice

Honors Theses

Halogen bonding is a noncovalent interaction that continues to garner interest among the scientific community. Investigation of halogen bonds in biological contexts typically revolves around rational drug design for developing therapeutics. However, halogen bonding may be occurring naturally in our body every day. Thyroid hormone and its regulating enzyme, iodothyronine deiodinase, show promising results for a halogen bonding interaction that happens during catalysis. Prior work has examined the interaction between the iodine of thyroid hormone and the selenium of iodothyronine deiodinase. However, this study is the first of its kind to use computational chemistry methods to analyze the halogen bond …

Investigation Of The Effects Of Resveratrol And Epigallocatechin Gallate On Woodsmoke-Induced Inflammation, Sarenna Naomi Enright

Honors Theses

Until a few years ago, most scientific investigations related to the health effects of air pollution focused on outdoor air pollutants. But in recent years, the concerns over indoor air pollution has increased. People can spend up to 90% of their time in indoor environments, especially their homes, even more so since the beginning of the COVID-19 pandemic. The concentrations of some air pollutants are five times higher than what is found outdoors.

Indoor air pollution exposure remains a significant cause of morbidity and mortality worldwide. Approximately half of the global population is exposed to abnormally high concentrations of household …

Analysis Of Test Anxiety In Human Anatomy And Physiology I Students At The University Of Mississippi, Anne Piazza

Honors Theses

Student anxiety, specifically test anxiety, is common hindrance to student performance in various courses including Human Anatomy and Physiology at the University of Mississippi. Through a sequence of three surveys we collected demographic information, anxiety data related to the course, and test anxiety in general We researched factors that could potentially influence student anxiety such as at what point in the semester the student is evaluated, when students feel the most stressed, outcomes on previous evaluations, and perceived outcomes of the course. We also examined what effect the anxiety has on the student such as lowered performance, lowered test scores, …

Towards Conserving Crop Wild Relatives Along The Texas–Mexico Border: The Case Of Manihot Walkerae, Gisel Garza, Crystian Sadel Venegas Barrera, Jon Dale, José Guadalupe Martínez-Ávalos, Teresa Patricia Feria-Arroyo

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Walker’s Manihot, Manihot walkerae, is an endangered species endemic to south Texas and northeastern Mexico and is a Crop Wild Relative (CWR) of the international and economically important crop cassava (M. esculenta). Manihot walkerae is globally endangered (IUCN’s Redlist, Texas list, USA); however, it is not recognized on the Mexican list of endangered species (NOM-059-SEMARNAT). We assessed the status of M. walkerae in Mexico and re-evaluated its global status. According to our analysis, M. walkerae should be considered an endangered species based on the IUCN’s assessment method and a threatened species in Mexico based on the Mexican criteria. Our findings …

Bumpy Stem Is An Arabidopsis Choline/Ethanolamine Kinase Required For Normal Development And Chilling Responses, Christina Rabeler, M. Chen, Nicholas J. Kaplinsky

Biology Faculty Works

Phospholipid biosynthesis is a core metabolic pathway that affects all aspects of plant growth and development. One of the earliest step in this pathway is mediated by choline/ethanolamine kinases (CEKs), enzymes in the Kennedy pathway that catalyze the synthesis of the polar head groups found on the most abundant plant phospholipids. The Arabidopsis genome encodes four CEKs. CEK1-3 have been well characterized using viable mutants while CEK4 encodes an essential gene, making it difficult to characterize its effects on plant development and responses to the environment. We have isolated an EMS-induced allele of CEK4 called bumpy stem (bst …

Prenatal Exposure To A Climate-Related Disaster Results In Changes Of The Placental Transcriptome And Infant Temperament, Jessica Buthmann, Dennis Huang, Patrizia Casaccia, Sarah O'Neill, Yoko Nomura

Advanced Science Research Center

Maternal stress during pregnancy exerts long-term effects on the mental well-being of the offspring. However, the long-term effect of prenatal exposure on the offspring’s mental status is only partially understood. The placenta plays a vital role in connecting the maternal side to the fetus, thereby serving as an important interface between maternal exposure and fetal development. Here, we profiled the placental transcriptome of women who were pregnant during a hurricane (Superstorm Sandy), which struck New York City in 2012. The offspring were followed longitudinally and their temperament was assessed during the first 6–12 months of age. The data identified a …

Increased Risk Of Mental Illness Due To Epigenetic Alteration Of The Nr3c1 Gene After Early Life Adversity., Erin Mccue

Thinking Matters Symposium

Early life adversity (ELA), such as malnutrition, abuse, and economic disparity, is an issue commonly seen in adolescents, a group already facing increased risk for stress-related disorders. This review of current literature reveals that gestational stress exposure, as well as variations in maternal care during postnatal development, cause latent effects on the epigenome, specifically impacting the glucocorticoid receptors (GRs) encoded by the NR3C1 gene. GRs bind to glucocorticoids to regulate the body’s neuroendocrine stress response. However, in those with a history of ELA, the number of GRs is reduced, generating dysregulation within the hypothalamic-pituitary-adrenal (HPA) axis. Rodent studies are utilized …

The Central Dogma: Gene Expression, Ayisha Sookdeo

Open Educational Resources

In this lesson plan, students will learn the basic structure and function of DNA and RNA. They will also learn the process of gene expression. Finally, students will learn about the scientific contributor, Ernest Everest Just, and his contributions to the field of Biology.

Circadian Phase Shifts Effect Of Social Jetlag On Cellular Metabolism And Circadian Genes In Wildtype Flies, Olivia Kozub

Biology Student Scholarship

Olivia Kozub ’23
Major: Biology
Faculty Mentor: Dr. Pamela Snodgrass-Belt, Biology

Drosophila, like humans, have circadian clocks which regulate behavioral and physiological systems within the body. This “biological clock” is synchronized to the environment via temperature and/or light cycles. Small fluctuations in day-length trigger a reset of circadian clocks daily. However, large disruptions can cause health and stress issues such as social jetlag. Social jetlag occurs when an individual’s biological clock clashes with the timing of one’s sleep schedule determined by social factors and the demands of the day.

Dna Methylation Among Chestnut-Crowned Babblers, Caddie E. Nguyen

Honors College Theses

Many Australian birds, including chestnut-crowned babblers, commonly use cooperative breeding. In these species, individuals may delay or refuse dispersal to provide care to the offspring of the others instead of producing their own. This system challenges natural selection evolution and postulates that reproductively advantage genes will be more favorable. One possibility that contributes to chestnut-crowned babblers’ dispersal behavior is the epigenetic modifications interacting between the genome and the environment during development. Chestnut-crowned babblers (Pomatostomus ruficeps) are usually found in arid and semi-arid zones, which are varied and poor-conditioned. In the undesired conditions, helpers are needed for breeding to occur …

Characterization Of Large-Scale Functional Network Organization In The Human Hippocampus, Annie Zheng

Arts & Sciences Graduate Student Theses and Dissertations

The hippocampus is critically important for a diverse range of neural processes, such as episodic memory, prospective memory, affective processing, and spatial navigation. Using both individual-specific precision functional mapping and large-sample group-averaged approaches of characterizing large-scale functional network organization in the human hippocampus, we uncovered general principles of and behaviorally-associated individual differences in hippocampal organization across development in children and adults. We found the hippocampus to be modularly organized along the anterior-posterior axis with the anterior hippocampus being preferentially connected to the default mode network (DMN), as expected. However, the posterior hippocampus was strongly connected to the parietal memory network …

Patient Knowledge Of Family History Of Cardiac Events And Risk Factors: Potential For Increase In Preventative Care Of Cardiovascular Diseases, Joseph Marentette

Honors Theses

The following literature review regards the preventative care of cardiovascular disease (CVD) patients with the knowledge of familial cardiac events and personal cardiac risk factors, particularly in younger populations ranging from ages 18 to 39, and develop potential preventative care measures. CVD is preventable with early reduction of risk factors. People can lower the impact of cardiac risk factors through the modification of their current lifestyle and behavioral habits. However, this is limited to the education and motivation of the person. Primary emphasis must be placed on community education and physician-patient interactions regarding CVD and cardiac risk factors. Physicians need …