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Climatic Stress Decreases Tick Survival But Increases Rate Of Host-Seeking Behavior, Caleb Nielebeck, Sang Hyo Kim, Antonio Pepe, Lucian Himes, Zachary Miller, Sophia Zummo, Mary Tang, Javier D. Monzón Jan 2023

Climatic Stress Decreases Tick Survival But Increases Rate Of Host-Seeking Behavior, Caleb Nielebeck, Sang Hyo Kim, Antonio Pepe, Lucian Himes, Zachary Miller, Sophia Zummo, Mary Tang, Javier D. Monzón

All Faculty Open Access Publications

Ticks are vectors of many diseases and are expanding in geographic distribution. However, how ticks will fare in their new environments, where they may experience stressful climatic conditions at the expansion front, remains unclear. Since there is a trade-off in ticks between behaviors that promote longevity and behaviors that promote reproduction, we hypothesized that extreme climatic stress reduces the survivorship of ticks but increases the frequency of tick host-seeking behavior, or questing. Here, we used a novel method to simulate climatic stress on individual ticks of three species—Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis—to evaluate their survival, physiology, and questing …


Ascophyllum Nodosum Seaweed Extract Application As A Possible Mechanism For Mitigating Salt Stress In Soybeans (Glycine Max), Elena Hoang Jan 2023

Ascophyllum Nodosum Seaweed Extract Application As A Possible Mechanism For Mitigating Salt Stress In Soybeans (Glycine Max), Elena Hoang

Honors Program Theses

Soil salinity, an abiotic stressor associated with climate change effects, inhibits the normal growth and development of sensitive crop species. The excessive accumulation of salt ions in plant tissue induces oxidative stress, which is characterized by an increased production of reactive oxygen species (ROS) damaging plant organelles and disrupting normal metabolic functions. Seaweed extracts (SWE) may be a solution for mitigating the effects of salt stress on crop yield and quality, as they introduce bioactive ingredients that are able to regulate gene expression and enhance natural physiological processes in plants. However, the positive benefits of SWE applications differ between plant …


Producing Grnas For Use In Crispr-Cas9 Dna Editing Applications Via In Vivo T7 Rna Polymerase Transcription In Escherichia Coli., Christian A. Santiago Jan 2023

Producing Grnas For Use In Crispr-Cas9 Dna Editing Applications Via In Vivo T7 Rna Polymerase Transcription In Escherichia Coli., Christian A. Santiago

Honors Program Theses

The development of the CRISPR-Cas9 system is widely considered to be a breakthrough advancement in gene editing. Compared to traditional technologies, CRISPR is generally regarded as the most accessible, effective, and precise tool for inducing stable and inheritable gene edits in vivo. The CRISPR-Cas9 gene editing complex relies on the complementary binding of guide RNAs to specifically target a DNA sequence for endonuclease cleavage and mutagenesis. The production of gRNAs for use in CRISPR applications can become exceedingly complex and costly, as in vivo methodologies generally require the use of RNA polymerases that interfere with gRNA sequence identity and in …


The Antibacterial Efficacy Of Silver (I) Cyanoximates Against Streptococcus Mutans Ua159 Biofilm Growth And Infection In Galleria Mellonella Larvae, Jill Hughes Jan 2023

The Antibacterial Efficacy Of Silver (I) Cyanoximates Against Streptococcus Mutans Ua159 Biofilm Growth And Infection In Galleria Mellonella Larvae, Jill Hughes

Honors Program Theses

Streptococcus mutans is the known etiological agent of dental caries. S. mutans’ virulence factors, namely biofilm formation and lactic acid fermentation, contribute to its pathogenic behavior within the oral cavity. Biofilms are thick, antibiotically resistant communities of bacteria that are much more difficult to treat than planktonic or free-floating bacteria. Continued misuse of antibiotics against dynamic communities, like biofilms, has led to increased research on non-antibiotic alternatives. Amongst these alternatives, there are silver and silver-based compounds. Silver is commonly incorporated into medicine due to its inhibitory and bactericidal effects and antibacterial properties. Silver (I) cyanoximates have demonstrated promising antibacterial activity …


Radiation-Induced Gastrointestinal (Gi) Syndrome As A Function Of Age, Hongyan Li, Herman C. Kucharavy, Carla Hajj, Liyang Zhao, Guoqiang Hua, Ryan Glass, Phillip B. Paty, Zvi Fuks, Richard Kolesnick, Karen Hubbard, Adriana Haimovitz-Friedman Jan 2023

Radiation-Induced Gastrointestinal (Gi) Syndrome As A Function Of Age, Hongyan Li, Herman C. Kucharavy, Carla Hajj, Liyang Zhao, Guoqiang Hua, Ryan Glass, Phillip B. Paty, Zvi Fuks, Richard Kolesnick, Karen Hubbard, Adriana Haimovitz-Friedman

Publications and Research

Previous studies show increased sensitivity of older mice (28–29 months) compared with young adult mice (3 months, possessing a mature immune system) to radiation-induced GI lethality. Age-dependent lethality was associated with higher levels of apoptotic stem cells in small intestinal crypts that correlated with sphingomyelinase activity, a source of pro-apoptotic ceramide. The objective of this study is to determine whether the cycling crypt base columnar cells (CBCs) in aging animals are specifically more sensitive to radiation effects than the CBCs in young adult mice, and to identify factors that contribute to increased radiosensitivity. Mortality induced by subtotal body radiation was …


Ubiquitination Of The Protocadherin-Γa3 Variable Cytoplasmic Domain Modulates Cell-Cell Interaction, Albert Ptashnik, Nicole Lamassa, Aliya Mambetalieva, Emily Schnall, Mike Bucaro, Greg R. Phillips Jan 2023

Ubiquitination Of The Protocadherin-Γa3 Variable Cytoplasmic Domain Modulates Cell-Cell Interaction, Albert Ptashnik, Nicole Lamassa, Aliya Mambetalieva, Emily Schnall, Mike Bucaro, Greg R. Phillips

Publications and Research

The family of ∼60 clustered protocadherins (Pcdhs) are cell adhesion molecules encoded by a genomic locus that regulates expression of distinct combinations of isoforms in individual neurons resulting in what is thought to be a neural surface “barcode” which mediates same-cell interactions of dendrites, as well as interactions with other cells in the environment. Pcdh mediated same-cell dendrite interactions were shown to result in avoidance while interactions between different cells through Pcdhs, such as between neurons and astrocytes, appear to be stable. The cell biological mechanism of the consequences of Pcdh based adhesion is not well understood although various signaling …


Quantity Of Questing Black-Legged Ticks And Associated Micro-Scale Environmental Data Collected From Four Suburban Parks Near New York City, Shipeng Sun, Chong Di, Li Li, Brian Sulkow, Weigang Qiu Jan 2023

Quantity Of Questing Black-Legged Ticks And Associated Micro-Scale Environmental Data Collected From Four Suburban Parks Near New York City, Shipeng Sun, Chong Di, Li Li, Brian Sulkow, Weigang Qiu

Publications and Research

During 2017 and 2018, we collected the quantity of questing black-legged ticks (Ixodes scapularis), also known as deer ticks, in 124 sampling sites of 5m by 5m in four state parks—Caumsett State Historic Park, Connetquot River State Park, Rockefeller State Park, and Fire Island National Seashore—around New York City. The black-legged tick is the primary vector for the spirochete Borrelia burgdorferi, the pathogen of Lyme disease, in Northeastern United States. Using the flagging method, we collected and counted the numbers of adult and nymphal black-legged ticks at each site. Along with these quantities, we also recorded the …


Factors Increasing Risk Of Acl Injury In Females, Alex Cardona Jan 2023

Factors Increasing Risk Of Acl Injury In Females, Alex Cardona

Graduate Student Dissertations, Theses, Capstones, and Portfolios

Females are more than 3.5 times more likely to suffer an ACL (Anterior Cruciate Ligament) injury than males are. Largely in part to neuromuscular differences, the risk of injury is ever present. Quadriceps dominance, joint laxity, and pelvic width are some of the leading risk factors affecting females. Most are anatomical differences that are ingrained from an early age. This paper introduces ACL injuries and highlights the reasons why females tend to tear their ACL in a non-contact way. Anatomical differences such as comparing quadriceps dominance versus hamstring dominance followed by pelvic width, and trunk dominance will all be reviewed. …


Allosteric Site At The Biotin Carboxylase Dimer Interface Mediates Activation And Inhibition In Staphylococcus Aureus Pyruvate Carboxylase, Amanda J. Laseke, Trevor J. Boram, Nicholas O. Schneider, Jeremy R. Lohman, Martin St. Maurice Jan 2023

Allosteric Site At The Biotin Carboxylase Dimer Interface Mediates Activation And Inhibition In Staphylococcus Aureus Pyruvate Carboxylase, Amanda J. Laseke, Trevor J. Boram, Nicholas O. Schneider, Jeremy R. Lohman, Martin St. Maurice

Biological Sciences Faculty Research and Publications

Allosteric regulation of the essential anaplerotic enzyme, pyruvate carboxylase (PC), is vital for metabolic homeostasis. PC catalyzes the bicarbonate- and ATP-dependent carboxylation of pyruvate to form oxaloacetate. Dysregulation of PC activity can impact glucose and redox metabolism, which contributes to the pathogenicity of many diseases. To maintain homeostasis, PC is allosterically activated by acetyl-CoA and allosterically inhibited by l-aspartate. In this study, we further characterize the molecular basis of allosteric regulation in Staphylococcus aureus PC (SaPC) using slowly/nonhydrolyzable dethia analogues of acetyl-CoA and site-directed mutagenesis of residues at the biotin carboxylase homodimer interface. The dethia analogues fully activate …


Comparative Genomic Analysis Of 31 Phytophthora Genomes Reveals Genome Plasticity And Horizontal Gene Transfer, Brent A. Kronmiller, Nicolas Feau, Danyu Shen, Javier F. Tabima, Shahin S. Ali, Andrew D. Armitage, Felipe Arredondo, Bryan A. Bailey, Stephanie R. Bollmann, Angela Dale, Richard J. Harrison, Kelly Hrywkiw, Takao Kasuga, Rebecca Mcdougal, Charlotte F. Nellist, Preeti Panda, Sucheta Tripathy, Nari M. Williams, Wenwu Ye, Yuanchao Wang, Richard C. Hamelin, Niklaus Grünwald Jan 2023

Comparative Genomic Analysis Of 31 Phytophthora Genomes Reveals Genome Plasticity And Horizontal Gene Transfer, Brent A. Kronmiller, Nicolas Feau, Danyu Shen, Javier F. Tabima, Shahin S. Ali, Andrew D. Armitage, Felipe Arredondo, Bryan A. Bailey, Stephanie R. Bollmann, Angela Dale, Richard J. Harrison, Kelly Hrywkiw, Takao Kasuga, Rebecca Mcdougal, Charlotte F. Nellist, Preeti Panda, Sucheta Tripathy, Nari M. Williams, Wenwu Ye, Yuanchao Wang, Richard C. Hamelin, Niklaus Grünwald

Biology

Phytophthora species are oomycete plant pathogens that cause great economic and ecological impacts. The Phytophthora genus includes over 180 known species, infecting a wide range of plant hosts, including crops, trees, and ornamentals. We sequenced the genomes of 31 individual Phytophthora species and 24 individual transcriptomes to study genetic relationships across the genus. De novo genome assemblies revealed variation in genome sizes, numbers of predicted genes, and in repetitive element content across the Phytophthora genus. A genus-wide comparison evaluated orthologous groups of genes. Predicted effector gene counts varied across Phytophthora species by effector family, genome size, and plant host range. …


Quantifying The Impacts Of Genetically Engineered Crops And Deep Soil C Cycling On The Sustainability Of Bioenergy Crop Production, Zoe Pagliaro Jan 2023

Quantifying The Impacts Of Genetically Engineered Crops And Deep Soil C Cycling On The Sustainability Of Bioenergy Crop Production, Zoe Pagliaro

Graduate Theses, Dissertations, and Problem Reports (ETD)

Bioenergy can help mitigate climate change by providing a carbon-neutral fuel source. However, multiple challenges exist to achieving carbon neutrality including converting lignocellulosic materials to fuel and enhancing soil C sequestration during the growth of the feedstocks. To address these challenges, there have been recent efforts to genetically modify feedstocks to produce more energy dense oils that increase fuel conversion efficiency and to cultivate deep-rooted perennial feedstocks that can enhance soil C storage. However, the C consequences and efficacy of these solutions remain largely uncertain.

To examine the C consequences of enhancing oil content of bioenergy feedstocks, I examined the …


Measuring And Modeling How Plant-Microbe Interactions Control Soil Carbon And Nitrogen Cycling In Managed And Unmanaged Ecosystems, Joanna Ridgeway Jan 2023

Measuring And Modeling How Plant-Microbe Interactions Control Soil Carbon And Nitrogen Cycling In Managed And Unmanaged Ecosystems, Joanna Ridgeway

Graduate Theses, Dissertations, and Problem Reports (ETD)

Our understanding of how plant-microbe interactions regulate carbon (C) and nitrogen (N) retention in soil organic matter (SOM) remains uncertain. Conflicting evidence suggests that microbial decomposition can lead to the loss of unprotected particulate SOM, but also that microbial decomposition produces simpler compounds that preferentially form more persistent aggregate- or mineral-protected SOM pools. Further, uncertainty remains in how plant-microbe interactions alter SOM retention in these different pools through litter chemistry controls on microbial decomposition traits and rhizosphere priming. As a result, this uncertainty limits our ability to sustainably manage ecosystems and understand future feedbacks between terrestrial ecosystems and the global …


Human–Black Bear Interactions And Public Attitudinal Changes In An Urban Ordinance Zone, Mark A. Barrett, Sarah E. Barrett, David J. Telesco, Michael A. Orlando Jan 2023

Human–Black Bear Interactions And Public Attitudinal Changes In An Urban Ordinance Zone, Mark A. Barrett, Sarah E. Barrett, David J. Telesco, Michael A. Orlando

Human–Wildlife Interactions

Human–bear (Ursus spp.) interactions (HBI) commonly occur in residential areas throughout North America. Negative HBI can be alleviated by using bear-resistant garbage cans (BRC) and by securing other bear attractants (e.g., bird feeders). Since the early 2000s, human and Florida black bear (U. americanus floridanus) densities have increased substantially throughout Florida, USA, concurrently producing an increase in HBI. In central Florida, an area with high densities of humans and black bears, we surveyed 2 neighborhoods that occurred in an urban ordinance zone established in 2016 that required residents to secure anthropogenic food sources. Residents were supplied with …


Understanding The Development Of Rafflesia Using A Transcriptomic Study Of Seed And Flower Bud In Comparison To Arabidopsis Thaliana, Brian Joseph Tomek Jan 2023

Understanding The Development Of Rafflesia Using A Transcriptomic Study Of Seed And Flower Bud In Comparison To Arabidopsis Thaliana, Brian Joseph Tomek

Selected Full-Text Master Theses 2021-

The holoparasitic plant genus Rafflesia is of interest for producing the largest single flowers in the world, though efforts to conserve it have been challenging with not much success in ex situ propagation due to the little that we know of its biology. Further study and understanding of the growth of Rafflesia species is necessary in order to preserve these endangered plants. Due to its potentially long growth cycle, there is a definite difficulty in studying the growth cycle through observation alone. Transcriptomic study is one tool which can be used to understand how Rafflesia species change throughout different stages …


Dissecting The Role Of Selenoprotein P And Thioredoxin Reductase In Pancreatic Cancer Metabolism, Alyssa A. Abbas Jan 2023

Dissecting The Role Of Selenoprotein P And Thioredoxin Reductase In Pancreatic Cancer Metabolism, Alyssa A. Abbas

Dissertations, Master's Theses and Master's Reports

Pancreatic ductal adenocarcinoma (PDAC), the fourth leading cause of US cancer-related deaths, has a stark 5-year survival rate of 9%, emphasizing an urgent need for effective therapies. A well-established characteristic of cancer, metabolic dysregulation, presents an opportunity for developing therapies that target specific metabolic susceptibilities inherent in cancer cells. Our recent studies have discovered a susceptibility in PDAC; deprivation of cystine or blocking its uptake by erastin (a cystine transport inhibitor) triggers significant lipid peroxidation, thereby inducing ferroptosis specifically in the mesenchymal subtype of PDAC, but not in the epithelial subtype. This study aims to elucidate the roles of Selenoprotein …


Cryogenic X-Ray Crystallographic Studies Of Biomacromolecules At Turkish Light Source "Turkish Delight", Necati̇ Atalay, Enver Kami̇l Akcan, Mehmet Gül, Esra Ayan, Ebru Destan, Fatma Betül Ertem Kuzucu, Nuretti̇n Tokay, Bariş Çakilkaya, Zeli̇ş Nergi̇z, Gözde Karakadioğlu Usta, Abdullah Kepceoğlu, İlki̇n Yapici, Bi̇lge Tosun, Ni̇lüfer Baldir, Günseli̇ Yildirim, J Austin Johnson, Ömür Güven, Alaleh Shafiei, Nazli Eylül Arslan, Merve Yilmaz, Cahi̇ne Kulakman, Seyi̇de Seda Paydos, Seynep Sena Çi̇nal, Kardelen Şabanoğlu, Ayşegül Pazarçevi̇ren, Ayşenur Yilmaz, Başak Canbay, Bengi̇su Aşçi, Esra Kartal, Serra Tavli, Mehmet Çaliseki̇, Günce Göç, Ari̇f Mermer, Gamze Yeşi̇lay, Sevde Altuntaş, Hiroshi Tateishi, Masami Otsuka, Mikako Fujita, Şaban Teki̇n, Hali̇li̇brahi̇m Çi̇ftçi̇, Serdar Durdaği, Gi̇zem Di̇nler Doğanay, Ezgi̇ Karaca, Burcu Kaplan Türköz, Burak Veli̇ Kabasakal, Ahmet Kati, Hasan Demi̇rci̇ Jan 2023

Cryogenic X-Ray Crystallographic Studies Of Biomacromolecules At Turkish Light Source "Turkish Delight", Necati̇ Atalay, Enver Kami̇l Akcan, Mehmet Gül, Esra Ayan, Ebru Destan, Fatma Betül Ertem Kuzucu, Nuretti̇n Tokay, Bariş Çakilkaya, Zeli̇ş Nergi̇z, Gözde Karakadioğlu Usta, Abdullah Kepceoğlu, İlki̇n Yapici, Bi̇lge Tosun, Ni̇lüfer Baldir, Günseli̇ Yildirim, J Austin Johnson, Ömür Güven, Alaleh Shafiei, Nazli Eylül Arslan, Merve Yilmaz, Cahi̇ne Kulakman, Seyi̇de Seda Paydos, Seynep Sena Çi̇nal, Kardelen Şabanoğlu, Ayşegül Pazarçevi̇ren, Ayşenur Yilmaz, Başak Canbay, Bengi̇su Aşçi, Esra Kartal, Serra Tavli, Mehmet Çaliseki̇, Günce Göç, Ari̇f Mermer, Gamze Yeşi̇lay, Sevde Altuntaş, Hiroshi Tateishi, Masami Otsuka, Mikako Fujita, Şaban Teki̇n, Hali̇li̇brahi̇m Çi̇ftçi̇, Serdar Durdaği, Gi̇zem Di̇nler Doğanay, Ezgi̇ Karaca, Burcu Kaplan Türköz, Burak Veli̇ Kabasakal, Ahmet Kati, Hasan Demi̇rci̇

Turkish Journal of Biology

X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and …


Sdf-1 Induces Directional Chemotaxis Of Endogenous Bmscs At The Intervertebral Fusion Site And Promotes Osteogenic Differentiation By Regulating Wnt/Ss-Catenin In The Bone Marrow Chimera Spinal Intervertebral Fusion Mouse Model, Qiwen Zhang, Ning Liang, Bin He, Siyou Wu, Depeng Wen, Xiaoyong Tang, Xiongcheng Shen Jan 2023

Sdf-1 Induces Directional Chemotaxis Of Endogenous Bmscs At The Intervertebral Fusion Site And Promotes Osteogenic Differentiation By Regulating Wnt/Ss-Catenin In The Bone Marrow Chimera Spinal Intervertebral Fusion Mouse Model, Qiwen Zhang, Ning Liang, Bin He, Siyou Wu, Depeng Wen, Xiaoyong Tang, Xiongcheng Shen

Turkish Journal of Biology

Clinical observations show that the current spinal fusion with internal fixation has a nonfusion rate of 5%-35%; however, methods to promote spinal fusion are limited. This study aimed to investigate the role of SDF-1-induced directional chemotaxis of BMSCs in bone marrow chimera spinal intervertebral fusion mouse model. BMSCs were isolated from bone marrow and identified by detecting CD44/CD34 positive cells. BMSCs (GFP-BMSCs) were labeled with GFP for tracking in vivo. Mice were inoculated with GFP-BMSCs to construct bone marrow chimera spinal intervertebral fusion model, which were divided into BM-SIF model, BM-SIF+SDF-1, BM-SIF+SDF-1-Anta group. The callus area of intervertebral fusion site …


Hydroquinidine Displays A Significant Anti-Carcinogenic Activity In Breast And Ovarian Cancer Cells Via Inhibiting Cell-Cycle And Stimulating Apoptosis, Mervenur Yavuz, Betül Şahi̇n, Ahmet Tarik Baykal, Turan Demi̇rcan Jan 2023

Hydroquinidine Displays A Significant Anti-Carcinogenic Activity In Breast And Ovarian Cancer Cells Via Inhibiting Cell-Cycle And Stimulating Apoptosis, Mervenur Yavuz, Betül Şahi̇n, Ahmet Tarik Baykal, Turan Demi̇rcan

Turkish Journal of Biology

Breast and ovarian cancers are women's most commonly diagnosed cancers. Seeking an efficient anticarcinogenic compound is still a top priority regarding the aggressiveness of these cancers and the limited benefit of current therapies. Hydroquinidine (HQ) is a natural alkaloid used in arrhythmia and Brugada syndrome. As an ion channel blocker, HQ exhibits its activity by altering ion gradient and membrane potential. Considering the growing evidence of ion channel blockers' antineoplastic potential, we were prompted to test HQ's effect on breast and ovarian cancers. MCF-7 and SKOV-3 cell lines were used to inspect how HQ acts on survival, clonogenicity, migration, tumorigenicity, …


Rpi-1 (Human Dcdc2) Displays Functional Redundancy With Nephronophthisis 4 In Regulating Cilia Biogenesis In C. Elegans, Oktay İsmai̇l Kaplan Jan 2023

Rpi-1 (Human Dcdc2) Displays Functional Redundancy With Nephronophthisis 4 In Regulating Cilia Biogenesis In C. Elegans, Oktay İsmai̇l Kaplan

Turkish Journal of Biology

Projecting from most cell surfaces, cilia serve as important hubs for sensory and signaling processes and have been linked to a variety of human disorders, including Bardet-Biedl Syndrome (BBS), Meckel-Gruber Syndrome (MKS), Nephronophthisis (NPHP), and Joubert Syndrome, and these diseases are collectively known as a ciliopathy. DCDC2 is a ciliopathy protein that localizes to cilia; nevertheless, our understanding of the role of DCDC2 in cilia is still limited. We employed C. elegans to investigate the function of C. elegans RPI-1, a Caenorhabditis elegans ortholog of human DCDC2, in cilia and found that C. elegans RPI-1 localizes to the entire ciliary …


Astragaloside Iv Improves Renal Function And Alleviates Renal Damage And Inflammation In Rats With Chronic Glomerulonephritis, Dong Zhang, Zongying Li, Yuan Gao, Hailing Sun Jan 2023

Astragaloside Iv Improves Renal Function And Alleviates Renal Damage And Inflammation In Rats With Chronic Glomerulonephritis, Dong Zhang, Zongying Li, Yuan Gao, Hailing Sun

Turkish Journal of Biology

From Astragalus membranaceus (Fisch.) Bge.var. mongholicus (Bge.) Hsiao, astragaloside IV (AS-IV), a saponin can be purified and is considered traditional Chinese medicine. The purpose of this study was to evaluate the AS-IV-mediated mechanism on chronic glomerulonephritis (CGN). A cationic bovine serum albumin-induced CGN rat model was established and 10, 15, or 20 mg/kg of AS-IV was administered to measure renal function and inflammatory infiltration. Influences of AS-IV on proliferation, cell cycle, and inflammation of LPS-induced rat mesangial cells (RMCs) were determined. The results demonstrated that AS-IV alleviated renal dysfunction, renal lesions, and inflammation in CGN rats. AS-IV prolonged the G0-G1 …


A Ph-Responsive Shell-Sheddable Polymeric Nanoparticles As The Photodynamic Drug Carrier: Synthesis, Characterization, And In Vitro Studies, Jing Lu Jan 2023

A Ph-Responsive Shell-Sheddable Polymeric Nanoparticles As The Photodynamic Drug Carrier: Synthesis, Characterization, And In Vitro Studies, Jing Lu

Turkish Journal of Biology

Shell-sheddable nanoparticles, composed of amphiphilic blockpolymers, have emerged as an attractive vehicle for the site-specific delivery of therapeutic agents. In this study, pH-responsive sheddable copolymers bearing an orthoester linker were synthesized via the ring-opening polymerization between γ-benzyl-L-glutamate N-carboxyanhydride and orthoester-bearing poly (ethylene glycol) macroinitiator (PEG-pH-NH2). The obtained poly (ethylene glycol)-b-poly(γ-benzyl-L-glutamate) (PEG-PBLG) could form stable nanoparticles in aqueous solutions due to the amphiphilic nature of the block copolymers. The PEG-PBLG-based nanoparticle exhibited good stability in physiological conditions (pH 7.4), whereas the nanoparticle was disassembled under acidic conditions (pH 5.0). The nanoparticles could encapsulate a photosensitizer, protophorphyrin IX …


Application Of Scanning Acoustic Microscopy For Evaluation Of Mmp Activation In Multiple Cancer Cell Lines With A Smart Probe, Hasan Ozan Otaş, Nasi̇re Uluç, İrem Demi̇rkan, Ayli̇n Alkan, Açelya Yilmazer, Seda Yaşa Ercan, Davod Khalafkhany, Nesri̇n Özören, Mehmet Burçi̇n Ünlü Jan 2023

Application Of Scanning Acoustic Microscopy For Evaluation Of Mmp Activation In Multiple Cancer Cell Lines With A Smart Probe, Hasan Ozan Otaş, Nasi̇re Uluç, İrem Demi̇rkan, Ayli̇n Alkan, Açelya Yilmazer, Seda Yaşa Ercan, Davod Khalafkhany, Nesri̇n Özören, Mehmet Burçi̇n Ünlü

Turkish Journal of Biology

Background/aim: Matrix metalloproteinases (MMPs) play an important role in the evaluation of many cancer types; however, the detection usually presents a challenge. Further assays for a better understanding of the fundamental roles of MMPs in pathophysiology are still needed. We aimed to use an activatable probe in scanning acoustic microscopy (SAM) to evaluate acoustically if the probe can aid the visualization of the effects of in vitro MMP activity. Materials and methods: We applied scanning acoustic impedance microscopy to obtain acoustic impedance maps of the cell line models of HT1080, THP-1, and SK-MEL-28 with and without MMPSense 680 probe incubation. …


Methionine Restriction And Cancer Treatment: A Systems Biology Study Of Yeast To Investigate The Possible Key Players, Esra Börklü Jan 2023

Methionine Restriction And Cancer Treatment: A Systems Biology Study Of Yeast To Investigate The Possible Key Players, Esra Börklü

Turkish Journal of Biology

Background/aim: Dietary restriction, mainly carbon and/or methionine restriction are among the upcoming supporting interventions along with chemotherapy in various cancers. Although dietary restriction has been proven to be beneficial, the main cellular machineries affected by its administration lacks deeper information considerably, a notable pitfall in its use as a personalized nutritional approach. Materials and methods: In this study, cellular effects of methionine restriction on a yeast model are explored via systems biology approaches. The methionine biosynthesis network, constructed by integrating interaction data with gene ontology terms, was analysed topologically, and proved to be informative about the intertwined relationship of methionine …


[Research Note] The Random Somatic Mutation Is Not Quite Random, Florentin Smarandache Jan 2023

[Research Note] The Random Somatic Mutation Is Not Quite Random, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This research note challenges the idea that Random Somatic Mutations are entirely random, highlighting their non-equiprobable nature and their influence on evolution, involution, or indeterminacy. It recalls the Neutrosophic Theory of Evolution, extending Darwin’s theory, and emphasizes the importance of distinguishing between different senses of “random mutation” in evolutionary theory.


Utilizing Amr Surveillance Data To Analyze Trends In Escherichia Coli Antibiotic Resistance Levels In The South African Provinces Of Gauteng And The Eastern Cape, Celia Maris Jan 2023

Utilizing Amr Surveillance Data To Analyze Trends In Escherichia Coli Antibiotic Resistance Levels In The South African Provinces Of Gauteng And The Eastern Cape, Celia Maris

Scripps Senior Theses

Antimicrobial resistant bacterial pathogens pose an ongoing threat to universal public health by causing more severe manifestations of infectious diseases, leading to an increase in healthcare expenditures and higher global mortality rates. Therefore, developing strategies to combat bacterial antimicrobial resistance (AMR) is vital for the future of human health. One promising strategy is through the utilization of AMR surveillance programs. This study focused on using AMR surveillance data from South Africa to analyze changes in Escherichia coli resistance levels to numerous antibiotics between January 2012 and December 2022 in Gauteng Province and the Eastern Cape Province. The study aimed to …


The Effect Of Lps On Phosphorylation Of Akt Signaling In Schwann Cells, Nicholas Wilde, Angela Asirvatham Jan 2023

The Effect Of Lps On Phosphorylation Of Akt Signaling In Schwann Cells, Nicholas Wilde, Angela Asirvatham

SURF Posters 2023

Schwann cells (SCs) are cells in the peripheral nervous system that may play a significant role in neuronal repair after an injury, however, little is known about their mechanisms on how they do so. In the lab, lipopolysaccharide (LPS), a bacterial endotoxin, is used to stimulate an injury while forskolin, a growth hormone, is used to activate the cAMP pathway. In this experiment, the cAMP pathway, which is involved in many cellular processes, and protein kinase b (AKT), a cell survival signal, where analyzed in different LPS doses (0.1, 1, and 10 µg/mL) and over different time periods (3-,6-,12-, and …


The Effects Of Sex On Zebrafish Bone Metabolism, Simon Bagatto Jan 2023

The Effects Of Sex On Zebrafish Bone Metabolism, Simon Bagatto

Williams Honors College, Honors Research Projects

I investigated the effects of diet and sex on zebrafish bone metabolism. Zebrafish were subjected to either a high-calorie or low-calorie diet over a five-week period. After this diet, zebrafish scales were used to measure alkaline phosphatase (ALP) and tartrate-resistant acid phosphatase (TRAP) enzyme activity with a fluorescent substrate. The enzyme activities were markers of the osteoblasts (ALP) and the osteoclasts (TRAP). These data were compared among sex and diet of the zebrafish using a repeated measures ANOVA statistical test. I also measured the number of resorption lacunae per scale (another indicator of osteoclast activity). The results showed higher TRAP …


How Akron Affects The Water Quality Of The Cuyahoga River, Allyson Darst Jan 2023

How Akron Affects The Water Quality Of The Cuyahoga River, Allyson Darst

Williams Honors College, Honors Research Projects

The purpose of this study was to analyze whether the city of Akron had negative effects on the Cuyahoga river, and determine if the Cuyahoga River was naturally able to remediate these effects downstream. The pollutants measured in this study include hardness, bromine, residual chlorine, iron, copper, lead, nitrate, nitrite, ammonium chloride, total chlorine, fluoride, carbonate, pH, total alkalinity and cyanuric acid. This study was done using water testing strips (JNW Direct) to test the water at four different locations along the Cuyahoga River downstream (North) of Akron. This study found that the city of Akron does have a negative …


Amphisbaenian Head Movement And Burrowing Forces In Damp Granular Media, Jacob Newell Jan 2023

Amphisbaenian Head Movement And Burrowing Forces In Damp Granular Media, Jacob Newell

Williams Honors College, Honors Research Projects

Damp granular media is a difficult environment to study because it is both practically complex and it lacks equations which fully describe its behavior. In this study, an oscillatory lateral head movement and its effects while penetrating damp granular media were tested using a robophysical model. This experimental research was inspired by the burrowing behavior of the clade Amphisbaenia, a group of usually limbless squamates that employ a variety of different burrowing behaviors, but it can apply to a wide range of burrowers. This research could help with both human burrowing technologies and the further investigation of animal behaviors.


Sustainability And Biomimicry, Tabitha Cooper Jan 2023

Sustainability And Biomimicry, Tabitha Cooper

Williams Honors College, Honors Research Projects

Standardization of business management systems is a vital part of the economic climate, as it allows for fair play between all competitors and encourages growth. The International Organization of Standardization (ISO) independently provides hundreds of standards ranging through dozens of different fields, providing standards applying to topics from quality management to material composition. Not much is readily available on the topics of ISO 9001, which outlines quality management systems (QMS) ISO 14001, which details environmental management systems (EMS), and their relation to ISO 18457, which explains what composes a biomimetic material or product. A literature review was conducted to gather …