Digital Commons Network^™

Full-Length, Glycosylated Nsp4 Is Localized To Plasma Membrane Caveolae By A Novel Raft Isolation Technique, Stephen M. Storey, Thomas F. Gibbons, Cecelia V. Williams, Rebecca D. Parr, Friedhelm Schroeder, Judith M. Ball

Faculty Publications

Rotavirus NSP4, initially characterized as an endoplasmic reticulum intracellular receptor, is a multifunctional viral enterotoxin that induces diarrhea in murine pups. There have been recent reports of the secretion of a cleaved NSP4 fragment (residues 112 to 175) and of the association of NSP4 with LC3-positive autophagosomes, raft membranes, and microtubules. To determine if NSP4 traffics to a specific subset of rafts at the plasma membrane, we isolated caveolae from plasma membrane-enriched material that yielded caveola membranes free of endoplasmic reticulum and nonraft plasma membrane markers. Analyses of the newly isolated caveolae from rotavirus-infected MDCK cells revealed full-length, high-mannose glycosylated …

Assessment Of Genetic Diversity In The Usda And Cip-Fao International Nursery Collections Of Quinoa (Chenopodium Quinoa Willd.) Using Microsatellite Markers [Abstract], S. A. Christensen, Donald B. Pratt, C. Pratt, P. T. Nelson, M. R. Stevens, Eric N. Jellen, C. E. Coleman, D. J. Fairbanks, A. Bonifacio, Peter J. Maughan

Faculty Publications

No abstract provided.

Review Of Breeding Field Crops, 5th Ed., Henry R. Owen

Faculty Research & Creative Activity

No abstract provided.

Review Of Dictionary Of Plant Tissue Culture, Henry R. Owen

Faculty Research & Creative Activity

No abstract provided.

Physical Contests For Females In The Japanese Beetle, Popillia Japonica, Paul Switzer, Kipp C. Kruse

Faculty Research & Creative Activity

We conducted field observations of physical competition for mates, in which a single male attempts to usurp a female from another male, in male Japanese beetles, Popillia japonica Newman (Coleoptera; Scarabaeidae). Physical contests for mates were relatively rare, but when they occurred the challenger male was able to successfully takeover females by dislodging the previously paired resident male in only 18% of contests, suggesting that a substantial prior residency advantage exists in this species. Challenger males that were successful in takeover attempts were significantly larger than the resident male. In contrast, no size pattern was found between intruding males and …

Additions To The Flora Of Connecticut, Gordon C. Tucker

Faculty Research & Creative Activity

Since the publication of the Connecticut checklist by Dowhan (1979), new state records have continued to appear. These were summarized by Mehrhoff (1995), including some made by Tucker ( 1987, 1991 ). Although geographically distant, the flora of Connecticut has continued to hold my attention since the publication of a flora of the southeastern part of the state (Tucker 1995). Over the past decade, I have made several collections that are new records for the state flora. These new records are reported in this paper, as well as a 1970 collection of Coronilla scorpio ides that was never added to …

Over-Expression Of Udp-Glucose Pyrophosphorylase In Hybrid Poplar Affects Carbon Allocation, Heather D. Coleman, Thomas Canam, Kyu-Young Kang, David D. Ellis, Shawn D. Mansfield

Faculty Research & Creative Activity

The effects of the over-expression of the Acetobacter xylinum UDP-glucose pyrophosphorylase (UGPase) under the control of the tandem repeat Cauliflower Mosaic Virus promoter (2335S) on plant metabolism and growth were investigated in hybrid poplar (Populus alba3grandidentata). Transcript levels, enzyme activity, growth parameters, leaf morphology, structural and soluble carbohydrates, and soluble metabolite levels were quantified in both transgenic and wild-type trees. Transgenic 2335S::UGPase poplar showed impaired growth rates, displaying reduced height growth and stem diameter. Morphologically, 2335S::UGPase trees had elongated axial shoots, and leaves that were substantially smaller in size when compared with wild-type trees at equivalent developmental stages. Biochemical analysis …

Phylogeny And Geological History Of The Cynipoid Wasps (Hymenoptera: Cynipoidea), Zhiwei Liu, Michael Engel, David Grimaldi

Faculty Research & Creative Activity

The geological history of the wasp superfamily Cynipoidea is reviewed, with the description of various new taxa, being mostly in Late Cretaceous amber from New Jersey and Canada. The various fossil lineages are incorporated into a phylogenetic analysis of the superfamily, and their implications for understanding the evolution of the group are explored. The following new taxa or taxonomic changes are proposed (authorship of all taxa is Liu and Engel): Protimaspidae, new family; Stolamissidae, new family; Stolamissus, new genus; Stolamissus mirabilis, new species; Proliopterinae, new subfamily; Proliopteron, new genus; Proliopteron redactus, new species; Goeraniinae, new subfamily; Goerania, new genus; Goerania …

Alaska At The Crossroads Of Migration: Space-Based Ornithology, Jill Deppe, K Wessels, J Smith

Faculty Research & Creative Activity

Understanding bird migration on a global scale is one of the most compelling and challenging problems of modern biology. Each year multitudes of migratory birds travel between breeding grounds in Alaska and wintering grounds in the Americas, Asia, and Australia. Here we present the conceptual framework for a spatially explicit, individual-based biophysical migration model driven by dynamic remote sensing observations of atmospheric and land surface conditions to simulate migration routes, timing, energy budgets, and probability of survival. Understanding temporal and spatial patterns of bird migration will provide insight into pressing conservation and human health issues related to this taxonomic group.

Additions To The Flora Of Connecticut, Gordon Tucker

Faculty Research & Creative Activity

Since the publication of the Connecticut checklist by Dowhan (1979), new state records have continued to appear. These were summarized by Mehrhoff (1995), including some made by Tucker ( 1987, 1991 ). Although geographically distant, the flora of Connecticut has continued to hold my attention since the publication of a flora of the southeastern part of the state (Tucker 1995). Over the past decade, I have made several collections that are new records for the state flora. These new records are reported in this paper, as well as a 1970 collection of Coronilla scorpio ides that was never added to …

The History Of Thalidomide, Ilana Fakherian

The Science Journal of the Lander College of Arts and Sciences

Thalidomide, introduced in Germany in 1954, was a drug that was initially prescribed for its sedative properties. In the late 1950s, thalidomide was widely used by women as an antiemetic drug to alleviate the nausea and vomiting (morning sickness) common in the early stages of pregnancy and to help them sleep. Thalidomide gained notoriety in 1961 when it was found to cause severe malformations in the growing fetus, such as stunted development or the complete absence of limbs. More over, later studies revealed that thalidomide generates peripheral neuropathy, dizziness, constipation, and menstruation abnormalities. However, at the time, inadequate tests were …

Proximate Developmental Mediators Of Sexual Dimorphism In Size: Case Studies From Squamate Reptiles, Henry B. John‐Alder, Robert M. Cox, Emily N. Taylor

Biological Sciences

Sexual dimorphism in size (sexual size dimorphism; SSD) is nearly ubiquitous, but the relative importance of genetic versus environmental control of SSD is not known for most species. We investigated proximate determinants of SSD in several species of squamate reptiles, including three species of Sceloporus lizards and the diamond‐backed rattlesnake (Crotalus atrox). In natural populations of these species, SSD is caused by sexual differences in age‐specific growth. Males and females, however, may often share similar potentials for growth: growth is strongly responsive to the availability of food, and sexual differences in growth can be greatly suppressed or completely …

Nontarget Effects Of The Mosquito Adulticide Pyrethrin Applied Aerially During A West Nile Virus Outbreak In An Urban California Environment, Walter M. Boyce, Sharon P. Lawler, Jennifer M. Schultz, Shannon J. Mccauley, Lynn S. Kimsey, Michael K. Niemela, Carrie F. Nielsen, William K. Reisen

Biological Sciences

In August 2006, a pyrethrin insecticide synergized with piperonyl butoxide (EverGreen Crop Protection EC 60-6, McLaughlin Gormley King Company, Golden Valley, MN) was sprayed in ultralow volumes over the city of Davis, CA, by the Sacramento-Yolo Mosquito and Vector Control District to control mosquitoes transmitting West Nile virus. Concurrently, we evaluated the impact of the insecticide on nontarget arthropods by 1) comparing mortality of treatment and control groups of sentinel arthropods, and 2) measuring the diversity and abundance of dead arthropods found on treatment and control tarps placed on the ground. We found no effect of spraying on nontarget sentinel …

Compartmentalization Of The Broad-Range Phospholipase C Activity To The Spreading Vacuole Is Critical For Listeria Monocytogenes Virulence, P.S. Marie Yeung, Yoojin Na, Amanda J. Kreuder, Helene Marquis

Biological Sciences

Listeria monocytogenes is a bacterial pathogen that multipliesin the cytosol of host cells and spreads directly from cellto cell by using an actin-based mechanism of motility. The broad-rangephospholipase C (PC-PLC) of L. monocytogenes contributes tobacterial escape from vacuoles formed upon cell-to-cell spread.PC-PLC is made as an inactive proenzyme whose activation requirescleavage of an N-terminal propeptide. During infection, PC-PLCis activated specifically in acidified vacuoles. To assess theimportance of compartmentalizing PC-PLC activity during infection,we created a mutant that makes constitutively active PC-PLC(the plcBpro mutant). Results from intracellular growth andcell-to-cell spread assays showed that the plcBpro mutant wassensitive to gentamicin, suggesting …

Correlated Evolution Of Genome Size And Seed Mass, Jeremy M. Beaulieu, Angela T. Moles, Ilia J. Leitch, Michael D. Bennett, John B. Dickie, Charles A. Knight

Biological Sciences

• Previous investigators have identified strong positive relationships between genome size and seed mass within species, and across species from the same genus and family. • Here, we make the first broad-scale quantification of this relationship, using data for 1222 species, from 139 families and 48 orders. We analyzed the relationship between genome size and seed mass using a statistical framework that included four different tests. • A quadratic relationship between genome size and seed mass appeared to be driven by the large genome/seed mass gymnosperms and the many small genome size/large seed mass angiosperms. Very small seeds were never …

Consequences Of A Genetic Bottleneck In California Condors: A Mitochondrial Dna Perspective, Mary S. Adams, Francis X. Villablanca

Biological Sciences

The California Condor (Gymnogyps californianus) has recently survived a severe population bottleneck. The entire population was reduced to 27 individuals in 1982. The number of genetic founders was even smaller. We obtained 482 base pairs of DNA sequence from the mitochondrial control region (CR) of all founder individuals that potentially represented unique maternal haplotypes. Four unique haplotypes were present in the genetic founders. One of these haplotypes is unique to Topatopa, a male brought into captivity in 1967, whose haplotype will not persist in the future population. Haplotype diversity (h) was reduced by 25% between the founder population …

Evaluation Of A Tissue Culture-Based Approach For Differentiating Between Virulent And Avirulent Vibrio Parahaemolyticus Strains Based On Cytotoxicity, P.S. Marie Yeung, Martin Wiedmann, Kathryn J. Boor

Biological Sciences

The ability of only a subset of Vibrio parahaemolyticus strains to cause human infection underscores the need for an analytical method that can effectively differentiate between pathogenic strains and those that do not cause disease. We tested the feasibility of a tissue culture-based assay to determine whether clinical isolates could be differentiated from nonclinical isolates based on relative isolate cytopathogenicity. To screen for cytotoxic capability, we measured relative extracellular lactate dehydrogenase as an indicator of host cell damage in five different mammalian cell lines in the presence of V. parahaemolyticus. Isolates originating from clinical sources exhibited 15.5 to 59.3% …

Structural Stability And Endonuclease Activity Of Pi-Scei Gfp-Fusion Protein, Ali Senejani, Peter J. Gogarten

Biology and Environmental Science Faculty Publications

Homing endonucleases are site-specific and rare cutting endonucleases often encoded by intron or intein containing genes. They lead to the rapid spread of the genetic element that hosts them by a process termed ‘homing’; and ultimately the allele containing the element will be fixed in the population. PI-SceI, an endonuclease encoded as a protein insert or intein within the yeast V-ATPase catalytic subunit encoding gene (vma1), is among the best characterized homing endonucleases. The structures of the Sce VMA1 intein and of the intein bound to its target site are known. Extensive biochemical studies performed on the PI-SceI enzyme provide …

Rapid Characterization Of The Fatty Acyl Composition Of Complex Lipids By Collision-Induced Dissociation Time-Of-Flight Mass Spectrometry, Xuemin Wang, Steven Wynn Esch, Pamela Tamura, Alexis Sparks, Mary Roth, Shivakumar Devaiah, Ernst Heinz, Todd Williams, Ruth Welti

Biology Department Faculty Works

Profiling of leaf extracts from mutants of Arabidopsis with defects in lipid desaturation demonstrates the utility of collision-induced dissociation time-of-flight mass spectrometry (CID-TOF MS) for screening biological samples for fatty acid compositional alterations. CID-TOF MS uses the collision cell of a quadrupole time-of-flight mass spectrometer to simultaneously fragment all of the ions produced by an ionization source. Electrospray ionization CID-TOF MS in the negative mode can be used to analyze fatty acyl anions derived from complex lipids as well as free fatty acids. Although acyl anion yield is shown to be a function of the lipid class and the position …

A Putative Approach For Influencing Stomatal Density By Over-Expressing Nadp-Dependent Malic Enzyme In Arabidopsis, Michael M. Gabor

Master's Theses and Doctoral Dissertations

Stomata are leaf structures critical for plant survival because they modulate the rate of transpiration. This study will examine a possible mode for regulating stomatal density by over-expressing NADP-dependent malic enzyme (NADP-ME), which is thought to deplete the counter-anion pool in Arabidopsis thaliana guard cells. It was hypothesized that over-expressing NADP-ME in Arabidopsis will elevate stomatal density. Scanning electron microscopy was employed to determine if any differences exist in numbers of stomatal complexes among transgenic lines and wild-type Arabidopsis. The results indicated a significant increase in stomatal numbers among some transgenic plant lines relative to the wild-type. Second, a series …

Behavioural Plasticity In An Ecological Generalist: Microhabitat Use By Western Fence Lizards, Dee A. Asbury, Stephen C. Adolph

All HMC Faculty Publications and Research

Question: What is the basis for geographic variation in microhabitat use in fence lizards?

Hypothesis: Population differences in microhabitat use reflect behavioural plasticity rather than genetic or experiential differences.

Organisms: Western fence lizards (Sceloporus occidentalis).

Field site: Three sites (desert, valley, and mountain) in southern California, USA.

Methods: We compared habitat use by free-ranging lizards in three field populations. We also collected lizards from these three populations and studied their microhabitat use in experimental enclosures at a single field site.

Results: In the wild, lizards chose higher and shadier perches at the hottest (desert) site, lower and sunnier perches at …

Measuring Ultrasonic Communication Between Mouse Pups And Adult Mother Mice, Katie Ludwig

Undergraduate Research Symposium (UGRS)

Measuring ultrasonic communication provides us with a way to study parental influence on animals. In this study I measured the ultrasonic communication between mouse pups and two maternal females, one of which who had given birth to the pups and the other had raised them. I found that there was no significant difference between the amount of noise expressed by pups in response to each the biological mother and foster mother test groups. Mouse pups call to maternal females regardless of genetic relatedness. Communication in mice may be a more complicated model because of their communal nature.

Concordance Of Nuclear And Mitochondrial Dna Markers In Detecting A Founder Event In Lake Clark Sockeye Salmon, Kristina M. Ramstad, Carol Ann Woody, Chris Habicht, G. Kevin Sage, James E. Seeb, Fred W. Allendorf

Biological Sciences Faculty Publications

Genetic bottleneck effects can reduce genetic variation, persistence probability, and evolutionary potential of populations. Previous microsatellite analysis suggested a bottleneck associated with a common founding of sockeye salmon Oncorhynchus nerka populations of Lake Clark, Alaska, about 100 to 400 generations ago. The common founding event occurred after the last glacial recession and resulted in reduced allelic diversity and strong divergence of Lake Clark sockeye salmon relative to neighboring Six Mile Lake and Lake Iliamna populations. Here we used two additional genetic marker types (allozymes and mtDNA) to examine these patterns further. Allozyme and mtDNA results were congruent with the microsatellite …

Structural Basis Of Effector Regulation And Signal Termination In Heterotrimeric Galpha Proteins, Stephen R. Sprang, Zhe Chen, Xinlin Du

Biological Sciences Faculty Publications

This chapter addresses, from a molecular structural perspective gained from examination of x-ray crystallographic and biochemical data, the mechanisms by which GTP-bound Galpha subunits of heterotrimeric G proteins recognize and regulate effectors. The mechanism of GTP hydrolysis by Galpha and rate acceleration by GAPs are also considered. The effector recognition site in all Galpha homologues is formed almost entirely of the residues extending from the C-terminal half of alpha2 (Switch II) together with the alpha3 helix and its junction with the beta5 strand. Effector binding does not induce substantial changes in the structure of Galpha*GTP. Effectors are structurally diverse. Different …