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Determination Of Dispersal Patterns Of The Small-Mouthed Salamander (Ambystoma Texanum) In Eagle Creek Park (Indianapolis, In), Stacey Diane Summitt

Undergraduate Honors Thesis Collection

Urbanization and the increasing threat of habitat fragmentation are contributing to the significant declines in amphibian populations world-wide. Ambystomatid species are particularly susceptible to habitat fragmentation because they migrate yearly across upland forests to their breeding sites. Habitat changes could be altering the genetic structure in these species; however few studies have focused on this topic and more generally, examined the dispersal patterns of Ambystomatids. In 2003, Clark, Cripe, and Stachniw conducted a study on “Metapopulation Structure of Ambystoma texanum in Eagle Creek Park (Indianapolis, IN) and the Potential for Gene Flow.” They hypothesized that distance limits the dispersal of …

Binding Of Icer To Its Own Promoter As A Mode Of Cooperative Regulation, Craig Stephen Queenan

Theses, Dissertations and Culminating Projects

Inducible cAMP Early Repressor (ICER) is a regulator of cAMP signaling in the cell. ICER can be found in normal cells, but it is not present in tumor cells. The growth of these tumor cells is hampered when ICER protein is artificially reintroduced in these cells. Therefore, it is hypothesized that ICER manipulation could potentially be used as a new therapy for the treatment of cancer. Although much is known about the physiological role of ICER, little is known about the regulation of the gene. In this study, the negative autoregulation of ICER by binding to its own regulatory sequences, …

Down Regulation Patterns Of The Mutated Ret Receptor Tyrosine Kinase, Mai A. Soliman

Theses, Dissertations and Culminating Projects

REarranged during Transfection (RET) is a mammalian tyrosine kinase receptor involved in the signal transduction pathways during early embryonic kidney and enteric nervous system development. Activation of RET is mediated by one of the membrane associated co-receptors GFRal-4 and one of the four GFL family ligands. Following ligand binding, RET undergoes autophosphorylation followed by downstream activation of additional cell signaling proteins. However, less is understood about the down- regulation patterns of RET and of naturally occurring RET mutants and laboratory modified forms of RET. In this study, the role of the cytoplasmic domain in receptor processing and protein degradation was …

Environmental Regulation Of Dormancy Loss In Lomatium Dissectum (Apiaceae) Seeds, Melissa Scholten, Jacklyn Donahue, Nancy L. Shaw, Marcelo Serpe

Biology Faculty Publications and Presentations

Background and aims Lomatium dissectum (Apiaceae) is a perennial, herbaceous plant of wide distribution in Western North America. At the time of dispersal, L. dissectum seeds are dormant and have underdeveloped embryos. The aims of this work were to determine the requirements for dormancy break and germination, to characterize the type of seed dormancy, and to determine the effect of dehydration after embryo growth on seed viability and secondary dormancy.

Methods The temperature requirements for embryo growth and germination were investigated under growth chamber and field conditions. The effect of GA3 on embryo growth was also analyzed to determine the …

Imaging Of Rnase Mitochondrial Rna Processing Localization Using Fluorescent Microscopy, Bryan Marascalchi

Renée Crown University Honors Thesis Projects - All

This paper presents a method for imaging RNase mitochondrial RNA processing localization using fluorescent microscopy. RNase mitochondrial RNA Processing, MRP, is an essential ribonucleoprotein endoribonuclease that functions in the degradation of specific mRNAs that control the cell cycle. A mutation of the RNA component of RNase MRP leads to a genetic disorder called Cartilage-Hair Hypoplasia. This disorder results from the decreased rate of cell growth because the mutant cell no longer has the ability to assemble rRNA, and cyclin-dependent cell-cycle regulation no longer functions correctly. My Capstone Project will study the localization and regulation of RNase MRP so that we …

Evolution Of Craniofacial Architecture And Lateralization In Perissodini Scale-Eaters, Thomas A. Stewart

Renée Crown University Honors Thesis Projects - All

To understand the evolution of craniofacial asymmetry within the Perissodini tribe, a group of scale-eating fish found in Lake Tanganyika, we performed shape analysis on their craniofacial architecture, and applied a simple lever model to measure asymmetry in lower-jaw mechanics. We found that craniofacial asymmetries were the consequence of sided differences in size and shape of craniofacial elements, and that sided differences in shape predict the lateralization of force and speed of the lower jaw in derived species. Quantitative Trait Locus analysis in Lake Malawi cichlids identified a single locus of major effect for jaw laterality, the first genetic marker …

Molecular Analysis Of The Genetic Heterogeneity Between Primary And Recurrent Glioblastoma, Anushi Shah

Renée Crown University Honors Thesis Projects - All

Introduction: Glioblastoma multiforme (GBM) is one of the deadliest forms of brain cancer, and affects more than 18,000 new cases each year in the United States alone. The current standard of treatment for GBM includes surgical removal of the tumor, along with radiation and chemotherapy. Despite these treatments, recurrence of GBM is extremely common, and once it recurs, the life expectancy is measured in weeks or months. One of the reasons for the deadly nature of the recurrent GBM is thought to be selection for therapy-resistant tumor cells. In this project, we sought to characterize the molecular changes in recurrent …

The Evolution Of Skull Form And Function Among The East African Cichlids Of Lakes Malawi, Victoria, And Tanganyika, Alyssa Mcintyre

Renée Crown University Honors Thesis Projects - All

An animal’s skeletal and muscular structures form a biological machine capable of interacting with its environment. When anatomical form changes the resulting modification in biomechanical function can allow it to occupy a new ecological niche. The cichlid fishes of the major East African Rift Lakes have been frequently regarded as one of the best know examples of adaptive radiations that have produced a large variety of skull shapes in an unusually short span of evolutionary time that has permitted the use of an extremely wide variety of feeding niches. I studied the anatomical diversity of this incredible lineage by dissecting …

The Geographic Distribution Of Polyploidy In A Pacific Northwest Plant, Megan A. Larson

Renée Crown University Honors Thesis Projects - All

Polyploidy is an important evolutionary mechanism of speciation in plants. Because polyploids may evolve cryptically, there can be several levels of ploidy in a species. The distribution of polyploid species is the first step in understanding the role of polyploidy in plant speciation. I examined the geographic distribution of polyploidy in Heuchera cylindrica (Saxifragaceae) by using flow cytometry to determine the ploidy level of 595 individuals from 39 populations spread across the geographic range of the species. Only single cytotype populations of diploids or tetraploids were found, and no triploids were observed. In contrast to other studies of polyploid distribution, …

Characterization Of The Human Mixed Lineage Leukemia Protein Homolog Set1 In Saccharomyces Cerevisiae, Illona Savich

Renée Crown University Honors Thesis Projects - All

Abstract not Included

A Community Ecology And Stable Isotope Study Of Plankton, Macroinvertebrate, And Fish Communities Surrounding Groundwater Vents In Lake Huron, Michigan, Thomas Garrison Sanders Jr.

Masters Theses

Extreme environments can create ecotones with uncharacteristic physicochemical conditions and ecological communities. Recently, several submerged sinkholes were discovered in Lake Huron where hypoxic groundwater that is rich with dissolved ions intrudes into surrounding lake water. Researchers have documented large growths of cyanobacteria and chemosynthetic bacteria surrounding these groundwater vents, but little is known if this production is utilized by upper trophic level organisms and how the environmental conditions affect local community density and diversity. My objectives were threefold: (1) I wanted to confirm the presence and describe the nature and extent of chemical and physical gradients in the sublacustrine sinkhole …

Ecological Facilitation May Drive Major Evolutionary Transitions, Zaal Kikvidze, Ragan M. Callaway

Biological Sciences Faculty Publications

There is a growing consensus among ecologists that ecological facilitation comprises a historically overlooked but crucial suite of biotic interactions. Awareness of such positive interactions has recently led to substantial modifications in ecological theory. In this article we suggest how facilitation may be included in evolutionary theory. Natural selection based on competition provides a conceptually complete paradigm for speciation, but not for major evolutionary transitions-the emergence of new and more complex biological structures such as cells, organisms, and eusocial populations. We find that the successful theories developed to solve these specific problematic transitions show a consistent pattern: they focus on …

A Study Of A Proposed Molecular Mechanism For Idiopathic Cases Of Hypertension: Detection Of Aldosterone-Receptor Complex At Period Homolog 1 (Per1) Promoter Using Chromatin Immunoprecipitation (Chip), Brent Colin Turner

Departmental Honors & Graduate Capstone Projects

Hypertension severely affects the quality and quantity of life of those afflicted with the disease. In most cases where the cause is known, hypertension is due to an abnormally high sodium condition; however, the mechanism by which this occurs is unknown. This phenomenon is particularly detrimental to patients considered to be non-dippers, experiencing no nocturnal dip in blood pressure. A proposed molecular mechanism for the relationship between dipping and sodium concentration involves the regulation of the circadian gene Period 1 homolog (Per1) by aldosterone and was studied by using chromatin immunoprecipitation (ChIP). This technique results in an enrichment of the …

Naive Prey Versus Nonnative Predators: A Role For Behavior In Endangered Species Conservation, Stephanie A. Kraft

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Fish are one of the most imperiled groups of vertebrates worldwide. Threats to fish fall into one of four general categories: physical habitat loss or degradation, chemical pollution, overfishing, and nonnative species introductions. Nonnative predatory fish often have a devastating impact on native prey, especially with endemic fish, whose restricted distribution and often limited evolutionary history with predators make them particularly susceptible to nonnative predators. One reason nonnative fish are often so efficient predators is that the native fish do not recognize the predator as a threat. Although many studies have examined the role of predator odor recognition, no fish …

My Two Boots ... A Walk Through The Wetlands. An Annual Outing For 700 Middle School Students, Julie Cwikla, Mark Lasalle, Sybil Wilner

Faculty Publications

No abstract provided.

Seed Predation On Slickspot Peppergrass By The Owyhee Harvester Ant, Joshua P. White

Boise State University Theses and Dissertations

1. (1) Seed predation can significantly restrict the reproductive output and individual fitness of plants, particular those plants that are rare or endangered. In some cases the total seed loss can reach 100%. Owyhee harvester ants, Pogonomyrmex salinus, actively remove the fruits and seeds of slickspot peppergrass, Lepidium papilliferum, a rare mustard endemic to southwest Idaho.
2. (2) Several experiments were conducted to quantify seed predation on L. papilliferum located within the foraging distance of P. salinus. Individuals exposed to harvester ants experienced a direct loss of fruits and seeds ( > 40%), whereas plants shielded from ants suffered almost …

Predator And Abiotic Effects On Hatching Phenotype And Survival Of Arboreal Frog Eggs With Implications For Phytoplankton, Jessica Hite

Theses and Dissertations

Historically studies have focused on either the terrestrial or aquatic environments independently. However, these systems are inherently linked through numerous pathways including organisms with complex life cycles. Both abiotic factors and predators of these organisms can influence connections by changing the number of prey moving across habitat boundaries and by changing the phenotype of prey. When the focal organisms are primary consumers, these effects may have important implications for ecosystem processes. My study investigated how terrestrial predators and abiotic factors affect the number and phenotype of herbivorous tadpole inputs into a tropical forest pond. I found that predators and abiotic …

The Effects Of Prenatal Exposure Of Valproic Acid On Cranial Nerve Nuclei: A Rat Model For An Autistic Phenotype, Shannon Pickup

Renée Crown University Honors Thesis Projects - All

Autistic spectrum disorder is a term referring to five pervasive developmental disorders characterized by impairment in social interaction, deficits in verbal and non-verbal communication and stereotyped repetitive behaviors and interests. The underlying brain injury that leads to autism is also unknown. The cause is also unknown but appears to be a combination of genetic and environmental factors. A study on prenatal thalidomide exposure found patients exposure on days 20-24 of gestation lead to a 1/3 rate of autism, a huge increase from the 1/150 rate of the general population. The thalidomide data suggests the initial injury leading to autism occurs …

Generation Of An Fsh Inducible Inh-[Alpha]-Flag-Gg-Icer I[Gamma] Ovarian Specific Gene Construct, Goce Bogdanoski

Theses, Dissertations and Culminating Projects

Avian animal models have led to many essential discoveries in molecular biology and biochemistry, including the discovery of vitamins, the chemistry behind vision and the development of transgenic hens as natural bioreactors for pharmaceutically relevant proteins. Hyperovulation in domesticated hens is considered a highly desirable genetic trait, a feature that has been explored in multiple studies and remains the focus of many biotech companies. Unlocking the molecular mechanism that controls ovulation may provide a basis for development in new reproductive technologies.

Previous research done on rodents provided data and identified a single transcription factor, the Inducible cAMP Early Repressor (ICER), …

Endurance And Exercise Physiology In Urosaurus Ornatus: Sex And Morph Differences?, Elizabeth Christine Foulkes

All-Inclusive List of Electronic Theses and Dissertations

Locomotory performance has been the focus of many ecological and evolutionary studies, and lizards have been a model system. While several studies have demonstrated interspecific differences in performance, few have examined intraspeciflc variation in performance and the suites of underlying physiological traits in tree lizards ( Uro.,·aurns ornatus) a species with alternative reproductive tactics that show variation in spatial use patterns. To assess the functional ecology of movement behaviors of male morphs and or females, I examined variation in exertion, plasma metabolites, plasma steroid hormones, and muscle fiber types in ornate tree lizards ( Urosaurus ornalus). In my study population, …

New Species And Expanded Geographic Ranges Of Gut Fungi And Their Symbiotic Relationship With Insect Hosts, Molly Elizabeth Bench

Boise State University Theses and Dissertations

Trichomycetes from suitable immature aquatic lower dipteran, mayfly and stonefly hosts (Baetidae, Capniidae, Chironomidae, Nemouridae, and Simuliidae) were collected and identified biweekly over a twelve month period, from an ephemeral system, Cottonwood Creek, in Boise, Idaho. The abundances of eight species of obligate endosymbionts from the genera Genistelloides, Harpella, Lancisporomyces, Paramoebidium, Smittium, and Zygopolaris were evaluated with host abundance for potential correlative relationships. The abundances of all of the examined species of gut fungi, except Smittium elongatum and S. megazygosporum, were positively correlated with the abundances of the hosts. The two species with non-significant relationships with their hosts' abundance were …

The Role Of Trna Modification Systems In The Cellular Stress Response, Margaret Daly

Biological Sciences

Transfer RNA(tRNA) is a small chain of nucleotides that participates in protein synthesis by pairing its anticodon with an mRNA codon and transferring an amino acid to a growing polypeptide chain. tRNA methyltransferases are a group of enzymes that can modify nucleosides in or around the anticodon, as well as at other parts of the tRNA. Recently, some of these modifications have been reported to enhance the translation of proteins that help the cell respond to and/or repair DNA damage. We hypothesize that the modifications catalyzed by some of the tRNA methyltransferases (Trms) stabilize the interaction between the mRNA codon …

Effects Of Carbachol And Vitamin C On Submandibular Salivary Gland Branching Morphogenesis, Nasiratu Larry

Biological Sciences

The Submandibular Salivary Gland (SMG) is formed by iterative branching of epithelial cells into secretory acinar endbuds and branched ducts that are extensively innervated by parasympathetic nerves which can influence gland development. Carbarrylcholine or carbachol, (an acetylcholine neurotransmitter analog), is a drug that binds to and activates the acetylcholine receptor. Previous research has suggested that carbachol on SMGs might delay ductal differentiation and affect actin localization in cells lining the lumen of ducts. Vitamin C has been shown to enhance matrix protein synthesis, which may accelerate cell differentiation. My goal was to test whether and how carbachol or modulation of …

Evolutionary Analysis Of Host Proteins Cd4, Cxcr4 And Ccr5, And Hiv/Siv Gp12, Lana Bunning

Biological Sciences

The acquired immune deficiency syndrome, AIDS, is a growing epidemic in the United States and the world. Since its discovery in 1981, the virus that causes AIDS, human immunodeficiency virus (HIV), has escalated. .Certain African ape (i.e., chimpanzees and gorillas) and monkey species are known to harbor forms of the virus termed SIV (simian immunodeficiency virus). Chimpanzees are the natural hosts of the SIV strains from which HIV-I evolved, but do not rapidly progress to AIDS, unlike their human relatives. In the wild, gorillas have been observed to harbor SIV, but this species' disease progression is currently unknown. As the …

Cognitive Inference And Resulting Behaviors In Response To Ambiguous Threat In The Coyote, Canis Latrans, Sarah Shawnee Dawson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

While antipredator strategies have been a focus of behavioral research for decades, scientists generally study the responses of prey toward overt, explicit threat. However, risk can also be significant when a threat is covert, such as when an ambush predator may be nearby or a secondary threat remains after a predator's departure. Little is known about the mechanism that prey use to assess risk in a predator's absence. Tests were conducted to determine the manner in which coyotes respond to these ambiguous threats. Specifically, I tested whether coyotes respond to prior anthropogenic activity that has occurred near their only food …

Effects Of Targeted Grazing And Prescribed Burning On Fire Behavior And Community Dynamics Of A Cheatgrass (Bromus Tectorum)-Dominated Landscape, Joel M. Diamond

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Studies were conducted to determine the effectiveness of using targeted grazing and prescribed burning as tools to reduce fire hazards and cheatgrass (Bromus tectorum) dominance on rangelands in the northern Great Basin. A field study, with four grazing-burning treatments (graze and no-burn, graze and burn, no-graze and burn, and no-graze and no-burn), was conducted on a B. tectorum-dominated site near McDermitt, Nevada from 2005-2007. Cattle removed 80-90% of standing biomass in grazed plots in May 2005 and 2006 when B. tectorum was in the boot (phenological) stage. Grazed and ungrazed plots were burned in October 2005 and …

Predicting The Growth Potential Of A Shallow, Warm-Water Sport Fishery: A Spatially Explicit Bioenergetics Approach, Samuel Kirk Dahle

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Capturing the range of fish consumption and growth potential of large, heterogeneous lentic systems can be challenging due to strong gradients in productivity, the diversity of habits types present, and in some cases, site-specific water quality issues. Cutler Reservoir (Utah, USA) displays a high degree of spatial and temporal variation in physical conditions and potential water quality limitations for fish, including high summertime water temperature and large, diel fluctuations in dissolved oxygen concentrations. The combination of bioenergetics modeling and GIS spatial analysis offers a promising interface for quantifying the fish consumptive and growth potential across a spatially and temporally heterogeneous …

Microbial Growth Inhibition And Decomposition Of Milk Mineral And Sodium Tripolyphosphate Added To Media Or Fresh Ground Beef, Rossarin Tansawat

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Milk mineral (MM) is a type II antioxidant (metal chelator) that can bind iron and prevent iron catalysis of lipid oxidation. Thus, MM might have microbial growth inhibition effects on iron-dependent bacteria. Objective 1 was to evaluate effects of MM on growth of non-pathogenic iron-dependent bacterial strains (Listeria innocua, Eschericia coli, Pseudomonas fluorescens). MM (1.5 % w/v) did not significantly inhibit growth of Listeria and E. coli. However, growth of Pseudomonas fluorescens was consistently and significantly reduced by ~1 log colony forming units per ml (CFU/ml) with all levels of MM (0.5, 0.75, 1.5 % …

Characterization Of The Substrate Specificity And Mechanism Of Protein Arginine Methyltransferase 1, Whitney Lyn Wooderchak

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Protein arginine methyltransferases (PRMTs) posttranslationally modify protein arginine residues. Type I PRMTs catalyze the formation of monomethylarginine (MMA) and asymmetric dimethylarginine (ADMA) via methyl group transfer from S-adenosyl methionine onto protein arginine residues. Type II PRMTs generate MMA and symmetric dimethylarginine. PRMT-methylation affects many biological processes. Although PRMTs are vital to normal development and function, PRMT-methylation is also linked to cardiovascular disease, stroke, multiple sclerosis, and cancer.

Thus far, nine human PRMT isoforms have been identified with orthologues present in yeast, plants, and fish. PRMT1 predominates, performing an estimated 85% of all protein arginine methylation in vivo. Yet, the substrate …

A Study On The Mechanisms Of Mercury Tolerance In The Cyanobacterium, Synechococcus Sp. Iu 625, Winder Bienvenido Perez

Theses, Dissertations and Culminating Projects

Synechococcus sp. IU 625 (Anacystis nidulans) is a freshwater unicellular cyanobacterium and an obligate photoautotroph that readily harbors plasmids. This organism has been used in many studies to assess the effect of heavy metal toxicity as an environmental pollutant. In one of the few studies for strain IU 625, Simon isolated 4.7- MDa and 37-MDa plasmids in 1978. The relationship between these plasmids and the 7.6-kb and 46.6-kb plasmids of strain PCC 7942 is unknown. Primers designed based on the sequence of 46.6-kb plasmid pANL of PCC 7942 exhibited positive priming with isolated plasmid DNA from Syn. …