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Exploring The Role Of Sac9 In Arabidopsis Thaliana Stress Response And Phosphoinositide Signaling, Elizabeth J. Drake

Biology

The SAC9 gene in Arabidopsis thaliana encodes a protein, Sac9, which is a putative 5-phosphatase involved in phosphoinositide stress signaling pathways in plants. The SAC domain of Sac9 has sequence homology with yeast and mammalian phosphoinositide phosphatases that catalyze the hydrolysis of phosphatidylinositol 4,5-bisphosphate [PtdIns(4,5)P₂]. The loss of the Sac9 protein in A. thaliana leads to an increase in the quantity of PtdIns(4,5)P₂ in the plant. This increase in PtdIns(4,5)P₂ in the sac9-1 mutant A. thaliana likely causes plants grown under non-stress conditions to exhibit several phenotypes normally associated with stress. The focus of this thesis …

Genetic And Phenotypic Variability Of Metarhizium Anisoplae For Virulence And Tolerance To Uv-B Radiation And Heat, Drauzio E. N. Rangel

Biology

The fungus Metarhizium anisopliae is an important agent for biological control of insects and has great advantages over chemical insecticides. However, ultraviolet radiation and heat from sunlight are serious obstacles for the use of M. anisopliae in agriculture, where the conidia may be impaired in a matter of a few hours in the field. Therefore, isolate selection and/or generation of conidia with increased tolerance to UV radiation and heat are a major goal of this dissertation. High variability in heat and UV-B tolerance was found among 17 isolates of M. anisopliae from different geographic origins, but there was very low …

Mycobacterium-Plant Interactions In Bioremediation Of Polycyclic Aromatic Hydrocarbon Compounds, Robert D. Child

Biology

Five mycobacterium isolates that degrade polycyclic aromatic hydrocarbons colonize the surface of barley roots from a seed inoculum. Colonization was maintained in the presence of an aggressive root-colonizing pseudomonad. All five of the mycobacterium strains utilized components in root washes for growth but they differed in their potential for biofilm formation. Components in the barley root washes did not impede the mineralization of pyrene. An inexpensive, portable, flexible microcosm chamber system was constructed and implemented in pyrene mineralization experiments. The system facilitated control of sterile conditions, air flow-through, and collection of volatilized radiolabeled compounds. Mineralization rates of pyrene were higher …

Induction Of Experimental Autoimmune Thyroiditis (Eat) In Sprague-Dawley Rats And Measurements Of Severity Of Eat Using Scanning Electron Microscopy, Claudio Miguel Fernandez

Theses, Dissertations and Culminating Projects

As early as the 1950’s it was shown that animals as mice, rats, guinea pigs, and monkeys that received one injection of xenogeneic thyroglobulin emulsified in Complete Freund’s Adjuvant (CFA) developed Experimental Autoimmune Thyroiditis (EAT) (Voller et al., 1980). The damage reported was destruction of the thyroid follicles, and infiltration of the thyroid by macrophages, neutrophils, and lymphocytes. An injection of Bordetella pertussis proved to enhance the incidence and severity of EAT in animal models. Bordetella pertussis is no longer manufactured in large quantities, and it is extremely difficult to purchase. Therefore, a different procedure had to be developed that …

Low Leaf N And P Resorption Contributes To Nutrient Limitation In Two Desert Shrubs, Rebecca E. Drenovsky, J. H. Richards

Biology

Both water and nutrients are limiting in arid environments, and desert plants have adapted to these limitations through numerous developmental and physiological mechanisms. In the Mono Basin, California, USA, co-dominant Sarcobatus vermiculatus and Chrysothamnus nauseosus ssp. consimilis are differentially N and P limited. We hypothesized that low leaf N resorption contributes to N-limitation in Sarcobatus and that low leaf P resorption contributes to P-limitation in Chrysothamnus. As predicted, Sarcobatus resorbed proportionally 1.7-fold less N than Chrysothamnus, but reduced leaf P in senescent leaves to lower levels than Chrysothamnus (8.0–10.8-fold lower based on leaf area or mass, respectively), consistent with N, …

The Effects Of Carotenoid And Food Intake On Caudal Fin Regeneration In Male Guppies, Gita R. Kolluru, N. C. Ruiz, N. Del Cid, Eric Dunlop, Gregory F. Grether

Biological Sciences

The trade‐offs involved in allocating carotenoid pigments and food to healing and regrowing damaged caudal fin tissue v. other functions were examined in guppies Poecilia reticulata, a species in which females prefer males that display larger amounts of carotenoids in their skin. The guppies were derived from four natural populations in Trinidad that differed in resource availability but not predation intensity. Carotenoids, food and site of origin did not affect either absolute or relative fin regrowth, which suggested that fin regeneration in guppies was not constrained by carotenoid availability. It is possible that carotenoid intake influences fin regeneration in …

A Dual-Genome Microarray For The Pea Aphid, Acyrthosiphon Pisum, And Its Obligate Bacterial Symbiont, Buchnera Aphidicola, Alex C. C. Wilson, Helen E. Dunbar, Gregory K. Davis, Wayne B. Hunter, David L. Stern, Nancy A. Moran

Biology Articles and Papers

Background

The best studied insect-symbiont system is that of aphids and their primary bacterial endosymbiont Buchnera aphidicola. Buchnera inhabits specialized host cells called bacteriocytes, provides nutrients to the aphid and has co-speciated with its aphid hosts for the past 150 million years. We have used a single microarray to examine gene expression in the pea aphid, Acyrthosiphon pisum, and its resident Buchnera. Very little is known of gene expression in aphids, few studies have examined gene expression in Buchnera, and no study has examined simultaneously the expression profiles of a host and its symbiont. Expression profiling …

Oncostatin M Differentially Regulates Cxc Chemokines In Mouse Cardiac Fibroblasts, Pascal J. Lafontant

Biology Faculty publications

Ischemia-reperfusion injury in the heart is characterized by marked infiltration of neutrophils in the myocardial interstitial space. Studies in human, canine, and murine models have revealed oncostatin M (OSM) expression in infiltrating leukocytes. In an effort to assess possible roles of OSM in the myocardium, we used cardiac fibroblasts (mCFs) isolated from adult mouse heart to determine whether recombinant murine OSM regulates the synthesis and release of MIP2/ CXCL2, KC/CXCL1, and LIX/CXCL5, which are three potent neutrophil chemoattractants in the mouse. Our results demonstrate that mCFs express OSM receptors and that, within the IL-6 cytokine family, OSM uniquely induces significant …

Variation In The Innate And Acquired Arms Of The Immune System Among Five Shorebird Species, Luisa Mendes, Theunis Piersma, Dennis Hasselquist, Kevin Matson, Robert Ricklefs

Biology Department Faculty Works

To contribute to an understanding of the evolutionary processes that shape variation in immune responses, we compared several components of the innate and acquired arms of the immune system in five related, but ecologically diverse, migratory shorebirds (ruff Philomachus pugnax L., ruddy turnstone Arenaria interpres L., bar-tailed godwit Limosa lapponica L., sanderling Calidris alba Pallas and red knotC. canutus L.). We used a hemolysis-hemagglutination assay in free-living shorebirds to assess two of the innate components (natural antibodies and complement-mediated lysis), and a modified quantitative enzyme-linked immunosorbent assay in birds held in captivity to assess the acquired component (humoral antibodies against …

Physiological Effects On Demography: A Long‐Term Experimental Study Of Testosterone’S Effects On Fitness, W. Reed, M. Clark, P. Parker, S. Raouf, N. Arguedas, D. Monk, E. Snajdr, V. Nolan, E. Ketterson

Biology Department Faculty Works

Understanding physiological and behavioral mechanisms underlying the diversity of observed life‐history strategies is challenging because of difficulties in obtaining long‐term measures of fitness and in relating fitness to these mechanisms. We evaluated effects of experimentally elevated testosterone on male fitness in a population of dark‐eyed juncos studied over nine breeding seasons using a demographic modeling approach. Elevated levels of testosterone decreased survival rates but increased success of producing extra‐pair offspring. Higher overall fitness for testosterone‐treated males was unexpected and led us to consider indirect effects of testosterone on offspring and females. Nest success was similar for testosterone‐treated and control males, …

Reproductive Delay In The Female Cape Ground Squirrel (Xerus Inauris), Beth Pettitt

Electronic Theses and Dissertations

The Cape ground squirrel, Xerus inauris, is a highly social cooperative breeder that forms groups containing multiple breeding females. While the distribution of reproduction among group members is fairly even (i.e. exhibits low reproductive skew), previous studies of Cape ground squirrels suggest the reproductive development of sub-adult females is inhibited by the presence of adult breeding female group mates. As reproductive delay is known to be influenced by a number of different parameters, my goal was to determine if other factors affected the timing of sexual maturity, and if so, which factors are the most influential. In this study, I …

Monitoring A Potentially Stressful Situation In Captive Western Lowland Gorillas (Gorilla Gorilla Gorilla) Through Analysis Of Behavior And Urinary Cortisol, Douglas Skurski

Electronic Theses and Dissertations

The concept of quantifying animal welfare has received much discussion, in various industries such as agriculture, laboratory, and zoological facilities. Behavioral, physical, and physiological indicators of welfare have previously been used to assess animal welfare; each having advantages and disadvantages, ranging from the practicality of data collection, to the validity of the data and how it is interpreted. Concurrent assessment of multiple measures is a more robust way to examine animal welfare, which utilizes the advantages of each measure, and provides additional information on which to base conclusions and animal care management decisions. This study used measures of behavior and …

Wikipdf - A Tool To Help Scientists Understand The Literature Of The Biological, Health, And Life Sciences, David Calloway

Electronic Theses and Dissertations

Biological sciences literature can be extraordinarily difficult to understand. Papers are commonly filled with terminology unique to a particular sub-discipline. Readers with expertise outside that sub-discipline often have difficulty understanding information the author is trying to convey. The WikiPDF project that is the subject of this thesis helps readers understand the biological sciences literature by automatically generating a customized glossary for each page of any technical paper available in Adobe Portable Document Format (PDF) format. WikiPDF relies on the Wikipedia®, an on-line encyclopedia created and supported by a host of volunteers, as a source of definitions used in its glossaries. …

Validation Of Water Flux And Body Composition In Glaucous Gulls (Larus Hyperboreus), Scott A. Shaffer, Gabrielsen, G.W., Verreault, J, Costa, D.P

Faculty Publications, Biological Sciences

Water influx rates (WIR) measured with tritiated water dilution were compared with direct measures of water and energy intake in glaucous gulls (Larus hyperboreus). Total body water (TBW) measured isotopically was also compared with TBW determined by body composition analysis (BCA) of the same birds. Seventeen wild gulls were captured and studied in outdoor enclosures at Ny-Ålesund, Svalbard, in July 2002. Gulls were hand-fed known quantities of Arctic cod (Boreogadus saida) or given water on the basis of one of four experimental treatments: (A) fasting, (B) fish only, (C) water only, or (D) fish and water. Water and energy content …

Phytoremediation: An Affordable Green Technology For The Clean-Up Of Metal-Contaminated Sites In Sri Lanka, Nishanta Rajakaruna, Kathleen M. Tompkins, Peter G. Pavicevic

Biological Sciences

Phytoremediation, the use of plants to remediate sites contaminated with organic and inorganic pollutants, and phytomining, the technology involved in extracting the pollutants removed for commercial purposes, are rapidly-growing industries with multi-million dollar markets. This solar-driven, green technology is oftenfavored over more conventional methods of clean-up due to its low cost, low impact, and wider public acceptance. In this paper we discuss phytoremediation as a valid alternative for remediating contaminated bodies of soils and water in developing countries like Sri Lanka, where clean-up can often be stalled due to the high costs associated with traditional remediation technologies. While phytoremediation techniques …

The Biology Of Canadian Weeds. 133. Cuscuta Campestris Yuncker, C. Gronovii Willd. Ex Schult., C. Umbrosa Beyr. Ex Hook., C. Epithymum (L.) L. And C. Epilinum Weihe, Mihai Costea, François J. Tardif

Biology Faculty Publications

Cuscuta spp. (dodders) are rootless, holoparasitic herbs with filiform stems attached to the host by numerous haustoria. In Canada, Cuscuta gronovii is the most common native species of the genus followed by Cuscuta campestris and C. umbrosa. Cuscuta epithymum and C. epilinum, both introduced species in Canada, occur occasionally. Infestation by Cuscuta spp. can result in serious yield losses and dodders are listed as noxious weeds in British Columbia, Ontario and Québec, and as restricted weeds in Alberta. These plants have evolved special adaptations to ensure their success: germination occurs late in the season when potential hosts are …

Food For Early Succession Birds: Relationships Among Arthropods, Shrub Vegetation, And Soil, Richard N. Conner, Daniel Saenz, Brent Burt

Faculty Publications

During spring and early summer, shrub- and herbaceous-level vegetation provides nesting and foraging habitat for many shrub-habitat birds. We examined relationships among arthropod biomass and abundance, foliage leaf surface area and weight, vegetation ground cover, soil characteristics, relative humidity, and temperature to evaluate what factors may influence arthropod food resources for birds. Relative humidity was inversely associated with arthropod biomass; as humidity increased biomass decreased (r = -0.44, P = 0.004). We failed to detect any relationships between deciduous foliage (surface area and weight) and arthropod biomass or abundance. However, both arthropod abundance (r = 0.30, P = 0.06) and …

Terpenes And Carbohydrate Source Influence Rumen Fermentation, Digestibility, Intake, And Preference In Sheep, J. J. Villalba, F. D. Provenza, K. C. Olson

Green Canyon Environmental Research Area, Logan Utah

We hypothesized that toxins and nutrients in foods interact to influence foraging behavior by herbivores. Based on this hypothesis we predicted that 1) terpenes in big sagebrush (Artemisia tridentata) influence intake and preference in sheep for diets varying in sources of nonstructural (barley grain) and structural (sugar beet pulp) carbohydrates, and 2) these effects are due to the differential effects of terpenes on fermentation products and apparent digestibility of each class of carbohydrates. Lambs were fed 2 isoenergetic and isonitrogenous diets with varying proportions of the same ingredients (beet pulp- and barley grain-based diet) or offered a choice between the …

Fungal Spore Dispersal By The Eastern Box Turtle (Terrapene Carolina Carolina), S. C. Jones, W. J. Jordan, Scott J. Meiners, A. N. Miller, A. S. Methven

Faculty Research & Creative Activity

Although spores from most macrofungi are wind- or water-dispersed, dispersal may also occur via biotic vectors. The Eastern box turtle (Terrapene carolina carolina) is a facultative mycovore that may play an important role in fungal spore dispersal although, to date, no information exists on fungi occurring in fecal samples of box turtles or on the ecological significance of box turtles as spore dispersal vectors. Consequently, a study of the potential for Eastern box turtles to act as vectors for spore dispersal was initiated by capturing wild turtles and collecting fecal samples. Serial dilutions from fecal samples were made to enumerate …

Using Latent Effects To Determine The Ecological Importance Of Dissolved Organic Matter To Marine Invertebrates, Dean E. Wendt, Collin H. Johnson

Biological Sciences

The uptake and utilization of dissolved organic matter (DOM) by marine invertebrates is a field that has received significant attention over the past 100 years. Although it is well established that DOM is taken up by marine invertebrates, the extent to which it contributes to an animal's survival, growth, and reproduction (that is, the ecological benefits) remains largely unknown. Previous work seeking to demonstrate the putative ecological benefits of DOM uptake have examined them within a single life stage of an animal. Moreover, most of the benefits are demonstrated through indirect approaches by examining (1) mass balance, or (2) making …

Vibrio Parahaemolyticus Growth Under Low-Iron Conditions And Survival Under High-Magnesium Conditions, Chia-Hsin Ju, P.S. Marie Yeung, Jessica Oesterling, Daniel A. Seigerman, Kathryn J. Boor

Biological Sciences

Since 1996, Vibrio parahaemoiyticus serotype 03:K6 and closely related strains have been associated with an increased incidence of V. parahaemolyticus gastroenteritis worldwide, suggesting the emergence of strains with enhanced abilities to cause disease. One hypothesis for the recent emergence of V. porahaemolyticus 03:K6 and related strains is an enhanced capacity for environmental survival relative to other strains, which might result in increased human exposure to these organisms. Therefore, the objective of this study was to test the hypothesis that survival or growth characteristics of clinical V. parahaemolyticus isolates differ from those of nonclinical isolates under different environmental conditions. Twenty- six …

The Influence Of Woodlot Size And Location In Suburban And Rural Matrices On Bird Species Richness And Individual Abundance, Neil Allen Chartier

Master's Theses and Doctoral Dissertations

This study assessed the influence of woodlot area and matrix composition on bird species richness and individual abundance. Bird surveys were conducted in winter 2004 and 2005 and spring 2005. Woodlot area and landscape composition were analyzed using GIS software. In winter, resident species richness and abundance increased as landscape diversity increased, whereas in spring, resident species richness decreased with increased landscape openness and abundance increased as woodlot area increased. Spring migrant species richness increased with increased landscape openness, and abundance decreased as woodlot area increased. In winter, Tufted Titmice were more likely to be present in smaller woodlots, whereas …

Glucocorticoid Hormone Levels Increase With Group Size And Parasite Load In Cliff Swallows, Samrrah A. Raouf, Linda C. Smith, Mary Bomberger Brown, John C. Wingfield, Charles R. Brown

School of Biological Sciences: Faculty Publications

Animals often cope with adverse events by releasing glucocorticoid hormones, which in turn promote increased energy assimilation. In captive animals, crowding also leads to increased glucocorticoid activity, probably because of increased levels of social competition. We investigated how group size and ectoparasite infestations affected endogenous levels of the glucocorticoid hormone, corticosterone, in colonial cliff swallows, Petrochelidon pyrrhonota, in southwestern Nebraska, USA. Parasites were removed from some colonies by fumigating nests. Baseline levels of corticosterone in breeding adults varied significantly with whether parasites were present, colony size (measured by total number of active nests at a site), and nesting stage. …

Proceedings Of The Western Australian Dhufish Workshop 2004, Mark Pagano, Terry Fuller

Fisheries Occasional Publications

The Western Australian Dhufish Workshop 2004 was a joint project between Recfishwest and the Western Australian Department of Fisheries.

The workshop incorporated presentations from the Department of Fisheries, Recfishwest, the Western Australian Fishing Industry Council, Murdoch University and Challenger TAFE to showcase current knowledge relating to the iconic dhufish in Western Australia. The perspectives of a recreational fisher, a commercial wetline operator and a metropolitan charter boat operator were also presented.

Through information sharing and discussion the workshop provided a platform to better understand the fundamental issues that underpin current and future management arrangements for this valuable resource. Both commercial …

Resistance Of Forest Community Types To Structural And Compositional Change Following Beech Bark Disease Infestation, Sarah Ann Hoskinson

Honors Theses

Pathogens change forest composition and structure by selectively eliminating susceptible individuals and species. Caused by a complex between an exotic scale insect and fungi, beech bark disease has infected mature American beech (Fagus grandifolia) trees through most of the species range. Before succumbing to the disease, infected trees generate root sprouts, transforming beech from a dominant canopy species into an abundant subcanopy species. Root sprouting can create dense beech thickets that interfere with the regeneration of other species. Exclusion of species from the understory has ecological and economic implications. This study compared forest community types for their resistance to compositional …

Quantifying Impacts Of White-Tailed Deer On Woodland Plant Communities, Brent E. Wachholder

Masters Theses

High population densities of white-tailed deer are changing woodland plant communities in the eastern United States. Deer populations subjectively characterized as overabundant are widely perceived as a threat to forest succession and conservation of rare plant species. I conducted a survey of 11 deer exclosures located at 7 sites through the state of Illinois in order to 1) determine the broad effects of deer at various densities on community attributes and 2) attempt to quantify the population density at which deer are overabundant, i.e., have negative effects on a) community attributes such as richness and diversity and b) survival of …

Characterization Of Putative In Vitro Hybrids Within The Genus Flammulina, Sean C. Jones

Masters Theses

The genus Flammulina (Basidiomycetes, Agaricales, Tricholomataceae) includes a group of saprobic mushrooms that grow in the wild and are also cultivated and sold commercially throughout the world under the name "enoki" or "enoki-take". Until the 1960s, the genus Flammulina was believed to consist of a single species with a pan-Northern Hemisphere distribution. Flammulina velutipes (Curt.: Fr.) Singer was more or less applied to all collections in the genus whether naturally or commercially produced (Buchanan 1993) until the mid 1960s. In the interim, 14 additional taxa have been described in Flammulina. Knowledge of hybridization within the Flammulina velutipes group is crucial …

The Development And Structure Of Feeding Arms In Antarctic Species Of Pterobranchs (Pterobranchia, Hemichordata), Catherine Krahe '06

Honors Projects

Pterobranchs are of particular interest to evolutionary biologists because as members of the phylum Hemichordata, they share characteristics with vertebrate animals and other chordates. The focus of this study is an examination of the development, structure, and function of the feeding arms in several species of pterobranchs collected from depths greater than 500 m from waters surrounding Antarctica. Pterobranch zooids in the genus Cephalodiscus feed using a crown of arms held over the dorsal surface of the body to filter particles from the water. Larvae released from adult tubes are ciliated, but lack feeding arms and are thought to derive …

A Real-Time Pcr-Based Assay For Detection Of Wuchereria Bancrofti Dna In Blood And Mosquitoes, Ramakrishna U. Rao, Laura J. Atkinson, Reda M.R. Ramzy, Hanan H. Helmy, Hoda A. Farid, Moses J. Bockarie, Melinda Susapu, Sandra J. Laney, Steven A. Williams, Gary J. Weil

Biological Sciences: Faculty Publications

We developed and evaluated real-time polymerase chain reaction (PCR) assays for detecting Wuchereria bancrofti DNA in human blood and in mosquitoes. An assay based on detection of the W. bancrofti “LDR” repeat DNA sequence was more sensitive than an assay for Wolbachia 16S rDNA. The LDR-based assay was sensitive for detecting microfilarial DNA on dried membrane filters or on filter paper. We also compared real-time PCR with conventional PCR (C-PCR) for detecting W. bancrofti DNA in mosquito samples collected in endemic areas in Egypt and Papua New Guinea. Although the two methods had comparable sensitivity for detecting filarial DNA in …

Characterizing The Resident, Fermentative Microbial Consortium In The Hindgut Of The Temperate-Zone Herbivorous Fish, Hermosilla Azurea (Teleostei: Kyphosidae), Pat M. Fidopiastis, Daniel J. Bezdek, Michael H. Horn, Judith S. Kandel

Biological Sciences

The zebraperch, Hermosilla azurea Jenkins and Evermann, a warm-temperate marine fish species with a strictly macroalgal diet, has a relatively long digestive tract with an enlarged hindgut and an associated blind caecum (HC). In zebraperch sampled off Santa Catalina Island, California (33°19′42′′N; 118°18′37′′W) in years 1995 through 2001, direct cell counts, gut epithelium assessment of bacterial attachment, and short-chain fatty acid (SCFA) analyses verified that the zebraperch HC possesses a dense and morphologically diverse, fermentative microbiota. Bacterial cell counts and morphological diversity were significantly higher in HC contents compared to anterior gut regions, suggesting that microbial populations were growing along …