Digital Commons Network^™

Redox Proteomic Identification Of Hne-Bound Mitochondrial Proteins In Cardiac Tissues Reveals A Systemic Effect On Energy Metabolism After Doxorubicin Treatment, Y. Zhao, Sumitra Miriyala, L. Miao, Mihail I. Mitov, David M. Schnell, Sanjit Kumar Dhar, J. Cai, J. B. Klein, Rukhsana Sultana, D. Allan Butterfield, Mary Vore, I. Batinic-Haberle, Subbarao Bondada, Daret K. St. Clair

Toxicology and Cancer Biology Faculty Publications

Doxorubicin (DOX), one of the most effective anticancer drugs, is known to generate progressive cardiac damage, which is due, in part, to DOX-induced reactive oxygen species (ROS). The elevated ROS often induce oxidative protein modifications that result in alteration of protein functions. This study demonstrates that the level of proteins adducted by 4-hydroxy-2-nonenal (HNE), a lipid peroxidation product, is significantly increased in mouse heart mitochondria after DOX treatment. A redox proteomics method involving two-dimensional electrophoresis followed by mass spectrometry and investigation of protein databases identified several HNE-modified mitochondrial proteins, which were verified by HNE-specific immunoprecipitation in cardiac mitochondria from the …

The Microbiome Of Rainbow Trout (Oncorhynchus Mykiss), Liam T. Lowrey

Biology ETDs

Commensal organisms are an integral part of all vertebrates, contributing heavily to development, pathogen defense, and metabolism. Commensals reside at different body sites within vertebrate animals creating unique and distinct communities that vary between locations. The human microbiome project has revealed distinct bacterial community compositions at the diverse range of body sites that have been sampled, providing evidence for different functional purposes of each microbiome. Rainbow trout, Oncorhynchus mykiss, serves as a model organism for the study of mucosal physiology and immunology. Teleost fish are evolutionarily important as one of the first jawed vertebrates with a dedicated adaptive mucosal immune …

Management Of Root Knot Nematode (Meloidogyne Incognita ) In Indiana Soybeans, David Edgardo Perla Martinez

Open Access Theses

The aim of this project was to evaluate different strategies for management of Root Knot Nematode (RKN) on soybean and tomato in Indiana. Seed treatments were evaluated under field and greenhouse conditions, but no effect on RKN populations was observed. Soybean lines evaluated for resistance to RKN under greenhouse conditions showed that six lines may be resistant to RKN. Four different commercial mustard cover crops were evaluated for their bio-fumigant impact on RKN populations in the production of tomato. Euruca sativa, Cv. Nemat was a poor host of RKN. A positive impact on the vigor of the tomato plants followed …

Fact Or Fiction: Random Mating In Field Populations Of Western Corn Rootworm (Diabrotica Virgifera Virgifera Leconte) Emerging On Bt And Refuge Corn Plants, Steven Joel Smith

Open Access Theses

The western corn rootworm, or WCR, (Diabrotica virgifera virgifera LeConte) is the most significant pest of field corn (Zea mays) in the United States, and has recently expanded its range into Europe. Since 2004, hybrid corn containing Bt toxins targeting the corn rootworm complex have been heavily adopted and are now the primary control measure for this pest in North American corn production. ^ The evolution of resistance is an ongoing concern, and to ensure Bt products will retain their usefulness, insect resistance management (IRM) tactics using various refuge structures have been adopted. One of the key …

Writing Assignments With A Metacognitive Component Enhance Learning In A Large Introductory Biology Course, Michelle Mynlieff, Anita Manogaran, Martin St. Maurice, Thomas J. Eddinger

Biological Sciences Faculty Research and Publications

Writing assignments, including note taking and written recall, should enhance retention of knowledge, whereas analytical writing tasks with metacognitive aspects should enhance higher-order thinking. In this study, we assessed how certain writing-intensive “interventions,” such as written exam corrections and peer-reviewed writing assignments using Calibrated Peer Review and including a metacognitive component, improve student learning. We designed and tested the possible benefits of these approaches using control and experimental variables across and between our three-section introductory biology course. Based on assessment, students who corrected exam questions showed significant improvement on postexam assessment compared with their nonparticipating peers. Differences were also observed …

The Foraging Behaviors And Decision-Making Strategies Of Overwintering Red-Tailed Hawks (Buteo Jamaicensis) And American Kestrels (Falco Sparverius) In Relation To Prey Density And Patch-Site Characteristics In Northeastern Arkansas, Melissa Marie Bobowski

Student Theses and Dissertations

I observed the wintering foraging behaviors of Red-tailed Hawks (Buteo jamaicensis) and American Kestrels (Falco sparverius) to determine the efficiency of their foraging strategies in relation to prey density and patch-site characteristics. The three cover-types (i.e., short rice stubble, soybean stubble, and fallow areas and roadsides) differed in densities of small mammals and vegetation cover. Cover-type was the most important predictor for the probability of making an attempt at prey for both species with the greatest probability at attempting was in fallow roadsides. Perch-type only influenced the probability of being successful at capturing a prey item for Red-tailed hawks with …

Manipulating The Tumor Microenvironment For Therapeutic Benefit, Kate M. Bailey

USF Tampa Graduate Theses and Dissertations

The physical tumor microenvironment contributes significantly to carcinogenesis, cancer progression and metastatic dissemination. Two main components of the tumor microenvironment, hypoxia and acidosis, are present in nearly every solid tumor and act as powerful selection forces against the tumor. Hypoxia and acidosis promote tumor heterogeneity and contribute to chemotherapy and radiotherapy resistance. This dissertation interrogates methods to target the tumor microenvironment including two novel studies describing mechanisms of buffer therapy resistance and targeting tumor hypoxia with vasodilators to enhance the efficacy of a hypoxia activated prodrug, TH-302.

In the first study, mechanisms of buffer therapy resistance were identified and detailed. …

Early Developmental Impacts On Male Traits And Female Preference In Zebra Finches (Taeniopygia Guttata), Martyna Boruta

USF Tampa Graduate Theses and Dissertations

Some male sexually selected traits are sensitive to stressors early in life and provide females with information to discriminate among males with different developmental experiences. Moreover, female early life experiences could also impact which males they choose. Females might either choose honest traits indicative of male quality, no matter their own experiences, or they might choose mates to match or compensate for their own experiences. To determine how developmental stressors alter male sexually-selected traits and female preference thereof, I exposed zebra finches (Taeniopygia guttata, ZEFI) to i) lipopolysaccharide (LPS), an immunogenic, Gram-negative bacterial component, ii) corticosterone (CORT), an avian stress …

Identification Of Novel Small Rnas And Characterization Of The 6s Rna Of Coxiella Burnetii, Indu Warrier, Linda D. Hicks, James M. Battisti, Rahul Raghavan, Michael F. Minnick

Biological Sciences Faculty Publications

Coxiella burnetii, an obligate intracellular bacterial pathogen that causes Q fever, undergoes a biphasic developmental cycle that alternates between a metabolically-active large cell variant (LCV) and a dormant small cell variant (SCV). As such, the bacterium undoubtedly employs complex modes of regulating its lifecycle, metabolism and pathogenesis. Small RNAs (sRNAs) have been shown to play important regulatory roles in controlling metabolism and virulence in several pathogenic bacteria. We hypothesize that sRNAs are involved in regulating growth and development of C. burnetii and its infection of host cells. To address the hypothesis and identify potential sRNAs, we subjected total RNA …

Traversing Swanton Road, 16th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Arthropod Communities And Red-Headed Woodpecker (Melanerpes Erythrocephalus) Habitat Selection, Michael C. Lordon

DePaul Discoveries

Red-headed woodpecker populations are near-threatened. Their habitat selection and reproductive success may be related to the availability of arthropods. We sampled the arthropod community within 0.04 ha plots surrounding known nests and compared these findings to plots without nests in the same fragments of forest or park in Cook County, IL. After 14 days, the traps were recovered, yielding close to 45,000 arthropods across 10 orders. Nest and control site differences were not statistically significant. Differences between park and forest diversity were not statistically significant either, but the greater diversity values in forests were consistent with expectations. We conclude that …

White-Tailed Deer Are A Biotic Filter During Community Assembly, Reducing Species And Phylogenetic Diversity, Danielle R. Begley-Miller, Andrew L. Hipp, Bethany H. Brown, Marlene Hahn, Thomas P. Rooney

Biological Sciences Faculty Publications

Community assembly entails a filtering process, where species found in a local community are those that can pass through environmental (abiotic) and biotic filters and successfully compete. Previous research has demonstrated the ability of white-tailed deer (Odocoileus virginianus) to reduce species diversity and favour browse-tolerant plant communities. In this study, we expand on our previous work by investigating deer as a possible biotic filter altering local plant community assembly. We used replicated 23-year-old deer exclosures to experimentally assess the effects of deer on species diversity (H′), richness (SR), phylogenetic community structure and phylogenetic diversity in paired …

Blattabacterium Genome: Structure, Function, And Evolution, Austin Alleman

Biology Theses

Blattabacterium, an obligate bacterial endosymbiont, functions as a mechanism of nitrogen recycling and nutrient synthesis within the Order Blattaria (cockroaches). Through genome annotation and the application of bioinformatics, the function of Blattabacterium within the cockroach Nauphoeta cinerea was described. Results of analyses indicate that the Blattabacterium genome, comprised of ~620,000 base pairs and ~620 individual genes, is drastically reduced when compared Flavobacterium, Blattabacterium’s closest free-living relative. However, the Blattabacterium genome retained functionality vital to host survival and fecundity and functions as a source of additional nutrient biosynthesis within its host. Like other intracellular endosymbionts, the Blattabacterium genome has a G+C …

Metal Release From Serpentine Soils In Sri Lanka, Meththika Vithanage, Anushka Upamali Rajapaksha, Christopher Oze, Nishanta Rajakaruna, C. B. Dissanayake

Biological Sciences

Ultramafic rocks and their related soils (i.e., serpentine soils) are non-anthropogenic sources of metal contamination. Elevated concentrations of metals released from these soils into the surrounding areas and groundwater have ecological-, agricultural-, and human health-related consequences. Here we report the geochemistry of four different serpentine soil localities in Sri Lanka by coupling interpretations garnered from physicochemical properties and chemical extractions. Both Ni and Mn demonstrate appreciable release in water from the Ussangoda soils compared to the other three localities, with Ni and Mn metal release increasing with increasing ionic strengths at all sites. Sequential extraction experiments, utilized to identify “elemental …

Privatization And Property In Biology, Joan E. Strassmann, David C. Queller

Biology Faculty Research

Organisms evolve to control, preserve, protect and invest in their own bodies. When they do likewise with external resources they privatize those resources and convert them into their own property. Property is a neglected topic in biology, although examples include territories, domiciles and nest structures, food caching, mate guarding, and the resources and partners in mutualisms. Property is important because it represents a solution to the tragedy of the commons; to the extent that an individual exerts long-term control of its property, it can use it prudently, and even invest in it. Resources most worth privatizing are often high in …

Effect Of Toxic Metal On Root And Shoot Biomass Of A Plant A Mathematical Model, O. P. Misra, Preety Kalra

Applications and Applied Mathematics: An International Journal (AAM)

In this paper, a mathematical model is proposed to study the impact of toxic metals on plant growth dynamics due to transfer of the toxic metal in plant tissues. In the model, it is assumed that the plant uptakes the metal from the soil through the roots and then it is transfered in the plant tissues and cells by transport mechanisms. It is observed experimently that when toxic (heavy) metals combines with the nutrient they form a complex compound due to which nutrient loses its inherent properties and the natural charaterstics of the nutrient are damaged. It is noticed that …

Optimization Of Growth Parameters For Algal Regrowth Potential Experiments, Chadwick D. Boggess

Master's Theses

Water cost is one of the key deterrents in making algal biofuels a feasible alternative to traditional petroleum fuels. Research into recycling of algal media was conducted in a laboratory setting at the California Polytechnic State University in San Luis Obispo. A growth assay was created to allow for algal cultures, specifically Ward’s Chlorella sp., to proliferate in sealed culture vessels. Bold’s Basal Medium (BBM) was selected as the media due to its extensive use with freshwater algal strains. However, this medium can limit algal growth through nutrient limitation and it became necessary to augment the original recipe. 50mM …

Venom Yield, Regeneration, And Composition In The Centipede Scolopendra Polymorpha, Allen Michael Cooper

Loma Linda University Electronic Theses, Dissertations & Projects

In this dissertation, I investigated yield, regeneration, and composition of centipede venom. In the first of three empirical studies, I investigated how size influenced venom volume yield and protein concentration in Scolopendra polymorpha and S. subspinipes. I also examined additional potential influences on yield in S. polymorpha, including relative forcipule size, relative mass, geographic origin, sex, time in captivity, and milking history. Volume yield was positively linearly related to body length in both species; however, body length and protein concentration were uncorrelated. In S. polymorpha, yield was most influenced by body length, but was also positively associated …

Identification Of Novel Small Rnas And Characterization Of The 6s Rna Of Coxiella Burnetii, Indu Warrier, Linda D. Hicks, James M. Battisti, Rahul Raghavan, Michael F. Minnick

Biology Faculty Publications and Presentations

Coxiella burnetii, an obligate intracellular bacterial pathogen that causes Q fever, undergoes a biphasic developmental cycle that alternates between a metabolically-active large cell variant (LCV) and a dormant small cell variant (SCV). As such, the bacterium undoubtedly employs complex modes of regulating its lifecycle, metabolism and pathogenesis. Small RNAs (sRNAs) have been shown to play important regulatory roles in controlling metabolism and virulence in several pathogenic bacteria. We hypothesize that sRNAs are involved in regulating growth and development of C. burnetii and its infection of host cells. To address the hypothesis and identify potential sRNAs, we subjected total RNA isolated …

Bioactivities Of Compounds From Elephantopus Scaber, An Ethnomedicinal Plant From Southwest China, Jianjun Wang, Ping Li, Basosai Li, Zhiyong Guo, Edward J. Kennelly, Chunlin Long

Publications and Research

Elephantopus scaber is an ethnomedicinal plant used by the Zhuang people in Southwest China to treat headaches, colds, diarrhea, hepatitis, and bronchitis. A new δ-truxinate derivative, ethyl, methyl 3,4,3′,4′-tetrahydroxy-δ-truxinate (1), was isolated from the ethyl acetate extract of the entire plant, along with 4 known compounds. The antioxidant activity of these 5 compounds was determined by ABTS radical scavenging assay. Compound 1 was also tested for its cytotoxicity effect against HepG2 by MTT assay (IC50 = 60 μM), and its potential anti-inflammatory, antibiotic, and antitumor bioactivities were predicted using target fishing method software.

Correlation Of Environmental Risks With The Prevalence Of Essential Hypertension And Chronic Cardiac Disease In Kasigau, Kenya, Addie Dodson

Mahurin Honors College Capstone Experience/Thesis Projects

Cardiovascular disease (CVD) is a chronic non-communicable disease (NCD) that is the leading cause of death across the world. In developing nations, like Kenya, the prevalence of NCDs like CVD are on the rise. Hypertension is the major risk factor for CVD and can be influenced by various environmental risk factors, like physical inactivity, unhealthy diets, tobacco use, and alcohol use. Though these are known factors that can affect blood pressure in developed nations, research over the prevalence of essential hypertension (EH) in developing countries is low. In an area in southeast Kenya known as Kasigau, there is a high …

Examining Human Perception Of Elephants And Large Trees For Insights Into Conservation Of An African Savanna Ecosystem, Adam Edge

Mahurin Honors College Capstone Experience/Thesis Projects

In savanna ecosystems, African elephants (Loxodonta africana) and large trees such as marula (Sclerocarya birreaand) and knobthorn (Acacia nigrescens) have ecological and human value; however, elephants have a large impact on favored trees, motivating the need for ecological conservation strategies. This study examined the perceptions of tourists and residents towards elephants, large trees, and other relevant factors for management purposes. In the Associated Private Nature Reserves, South Africa, a survey was distributed to tourists and residents to determine perceptions of elephants of different age classes, group sizes and sex, and toward savanna habitat impacted …

Neural Circuitry Underlying The Central Hypertensive Action Of Nesfatin-1: Melanocortins, Corticotropin-Releasing Hormone, And Oxytocin, Gina L.C. Yosten, Willis K. Samson

Biological Sciences Faculty Research & Creative Works

Nesfatin-1 is produced in the periphery and in the brain where it has been demonstrated to regulate appetite, stress hormone secretion, and cardiovascular function. The anorexigenic action of central nesfatin-1 requires recruitment of neurons producing the melanocortins and centrally projecting oxytocin (OT) and corticotropin-releasing hormone (CRH) neurons. We previously have shown that two components of this pathway, the central melanocortin and oxytocin systems, contribute to the hypertensive action of nesfatin-1 as well. We hypothesized that the cardiovascular effect of nesfatin-1 also was dependent on activation of neurons expressing CRH receptors, and that the order of activation of the melanocortin-CRH-oxytocin circuit …

The Effects Of Jasmonic Acid And Chemicals In The Ja Pathway On The Defense Systems And Gene Expression In Moss, Physcomitrella Patens And Amblystegium Serpens, Allison Shanks

Undergraduate Honors Thesis Collection

Systemic acquired resistance (SAR) is a defense system used by plants that results in increased resistance to future pathogen infection following an initial pathogen exposure. SAR in vascular plants has been well documented; however, a similar defense system has only recently been documented in non-vascular plants. It is believed that chemicals in the jasmonic acid (JA) pathway are able to activate the SAR response in vascular plants. The non-vascular plant, Amb/ystegium serpens, will be used as a model to test if SAR is triggered by JA and two other molecules in the JA pathway, 12-oxo-phytodieonic acid, and methyl jasmonate. To …

Identification Of Water Kefir Microbial Composition And Rapidly Growing Yeast, Wei Ma

CLAS: Colby Liberal Arts Symposium

Products of microbial fermentation such as probiotic yogurt have been found to confer health benefits, such as inhibiting fungal and bacterial growth, prevention of oral, mammary neoplasia and multidrug-resistant myeloid leukemia. Water kefir, or tibicos, is a type of symbiotic culture of yeast and bacteria that shows potential to be used as preventative and chemotherapeutic agent against cancer. Here, we study water kefir in terms of its microbial composition to determine the species of microorganism responsible for producing the proposed antineoplastic extracellular polymeric substance, using both culture-dependent and independent techniques. Selective and non-selective media were used to promote the growth …

Level Of Uv-B Radiation Influences The Effects Of Glyphosate-Based Herbicide On Fitness Of The Spotted Salamander, Nicholas A. Levis

Masters Theses & Specialist Projects

Numerous causes have been implicated in contributing to amphibian population declines since the 1980's, with habitat modification, ultraviolet radiation (UV-B) and environmental contaminants (such as glyphosate-based herbicide) being among the most common. This study identifies the effects of a generic glyphosate-based herbicide (GLY- 4 Plus) on mortality, immune function, body condition, and morphological plasticity of larvae of the spotted salamander (Ambystoma maculatum) under conditions that reflect open and closed canopy light regimes. Larval salamander responses to glyphosate-based herbicide varied depending on UV-B conditions. In general, it appears that an open canopy (i.e. greater UV-B exposure) may confer fitness benefits. In …

Reconstructing New World Monkey Phylogeny: Alu Elements In The Common Marmoset Genome, Catherine Fontenot

Honors Capstones

No abstract provided.

Reproduction And Nesting In Teleost Fish, With A Focus On Reproduction In Centrarchids And Specific Analysis Of Nesting In Lepomis Megalotis, Rebecca Irene Allee

Undergraduate Honors Thesis Collection

Fish represent the most diverse and oldest living class of vertebrates, making up approximately 48% of all known members of the subphylum Vertebrata (Bolis, et al. 2001). They are able to live in a wide variety of habitats, from salt water to fresh water and from cold polar seas to areas of intense pressure in the depths of the ocean (Moyle and Cech 1996). Because of this overwhelming diversity, the evolution and ecology of fishes has been a dynamic field of study (Moyle and Cech 1996). Researchers have generally divided fish into three distinct groups: jawless fishes (Class Agnatha), …

The Relationship Between Ectomycorrhizae And Metal Contamination In An Urban Brownfield, Jessica Marta Evans

Theses, Dissertations and Culminating Projects

This study examined ectomycorrhizal and plant relationships in contaminated soil in situ to determine the interactions between these three factors. Ectomycorrhizal fungi (EMF) were identified by physical morphotyping followed by sequencing of ribosomal DNA. Plant productivity was assessed through Leaf Area Index (LAI) measurements taken from May through August of 2012 and 2013. Changes in EMF community composition and plant productivity were observed based on their position on the metal contamination gradient. While EMF composition changed depending on the level of metal contamination, none of the ectomycorrhizal species consistently outcompeted other species in the highly contaminated environments. Cenococcum geophilum was …

Identification And Expression Analysis Of Sugar Transporters In Microbotryum Violaceum., Jared Morris Andrews

College of Arts & Sciences Senior Theses

No abstract provided.