Digital Commons Network^™

Evolving Paradigms In Biological Carbon Cycling In The Ocean, Chuanlun Zhang, Hongyue Dang, Farooq Azam, Ronald Benner, Louis Legendre, Uta Passow, Luca Polimene, Carol Robinson, Curtis A. Suttle, Nianzhi Jiao

Faculty Publications

Carbon is a keystone element in global biogeochemical cycles. It plays a fundamental role in biotic and abiotic processes in the ocean, which intertwine to mediate the chemistry and redox status of carbon in the ocean and the atmosphere. The interactions between abiotic and biogenic carbon (e.g. CO₂, CaCO₃, organic matter) in the ocean are complex, and there is a half-century-old enigma about the existence of a huge reservoir of recalcitrant dissolved organic carbon (RDOC) that equates to the magnitude of the pool of atmospheric CO₂. The concepts of the biological carbon pump (BCP) …

High-Density Lipoprotein Inhibits Serum Amyloid A-Mediated Reactive Oxygen Species Generation And Nlrp3 Inflammasome Activation, Preetha Shridas, Maria C. De Beer, Nancy R. Webb

Internal Medicine Faculty Publications

Serum amyloid A (SAA) is a high-density apolipoprotein whose plasma levels can increase more than 1000-fold during a severe acute-phase inflammatory response and are more modestly elevated in chronic inflammation. SAA is thought to play important roles in innate immunity, but its biological activities have not been completely delineated. We previously reported that SAA deficiency protects mice from developing abdominal aortic aneurysms (AAAs) induced by chronic angiotensin II (AngII) infusion. Here, we report that SAA is required for AngII-induced increases in interleukin-1β (IL-1β), a potent proinflammatory cytokine that is tightly controlled by the Nod-like receptor protein 3 (NLRP3) inflammasome and …

The Evolution Of Anti-Bat Sensory Illusions In Moths, Juliette J. Rubin, Chris A. Hamilton, Christopher J.W. Mcclure, Brad A. Chadwell, Akito Y. Kawahara, Jesse R. Barber

Biology Faculty Publications and Presentations

Prey transmit sensory illusions to redirect predatory strikes, creating a discrepancy between what a predator perceives and reality. We use the acoustic arms race between bats and moths to investigate the evolution and function of a sensory illusion. The spinning hindwing tails of silk moths (Saturniidae) divert bat attack by reflecting sonar to create a misleading echoic target. We characterized geometric morphometrics of moth hindwings across silk moths, mapped these traits onto a new, robust phylogeny, and found that elaborated hindwing structures have converged on four adaptive shape peaks. To test the mechanism underlying these anti-bat traits, we pit bats …

Health Fetishism Among The Nacirema: A Fugue On Jenny Reardon’S "The Postgenomic Condition: Ethics, Justice, And Knowledge After The Genome" (Chicago University Press, 2017) And Isabelle Stengers’ "Another Science Is Possible: A Manifesto For Slow Science" (Polity Press, 2018), Scott F. Gilbert

Biology Faculty Works

Personalized medicine has become a goal of genomics and of health policy makers. This article reviews two recent books that are highly critical of this approach, finding their arguments very thoughtful and important. According to Stengers, biology’s rush to become a science of genome sequences has made it part of the “speculative economy of promise.” Reardon claims that the postgenomic condition is the attempt to find meaning in all the troves of data that have been generated. The current paper attempts to extend these arguments by showing that scientific alternatives such as ecological developmental biology and the tissue organization field …

Adaptive Divergence In A Defense Symbiosis Driven From The Top Down, Jeremy J. Heath, Patrick Abbot, John O. Stireman Iii

Biological Sciences Faculty Publications

Most studies of adaptive radiation in animals focus on resource competition as the primary driver of trait divergence. The roles of other ecological interactions in shaping divergent phenotypes during such radiations have received less attention. We evaluate natural enemies as primary agents of diversifying selection on the phenotypes of an actively diverging lineage of gall midges on tall goldenrod. In this system, the gall of the midge consists of a biotrophic fungal symbiont that develops on host-plant leaves and forms distinctly variable protective carapaces over midge larvae. Through field studies, we show that fungal gall morphology, which is induced by …

Effects Of Mowing And Tebuthiuron On The Nutritional Quality Of Wyoming Big Sagebrush, Kurt T. Smith, Jennifer S. Forbey, Jeffrey L. Black

Biology Faculty Publications and Presentations

Wyoming big sagebrush (Artemisia tridentata Nutt. ssp. wyomingensis Beetle & Young) is the most abundant and widely distributed subspecies of big sagebrush and has been treated through chemical application, mechanical treatments, and prescribed burning in efforts thought to improve habitat conditions for species such as greater sage-grouse (Centrocercus urophasianus) and mule deer (Odocoileus hemionus). Although the response of structural attributes of sagebrush communities to treatments is well understood, there is a need to identify how treatments influence the quality of sagebrush as winter food for wildlife. Our purpose was to identify how mowing and tebuthiuron …

Modification Of Diet And Foraging Range By Harvester Ants In Response To Altered Seed Availability, Ian C. Robertson, Matthew S. Schmasow

Biology Faculty Publications and Presentations

Food collection is a critical component of an individual’s life, and for eusocial insects, the colony that individual foragers support and maintain. Changes to the distribution and composition of food types in the environment are expected influence diet selection if the economics of foraging are altered. For seed-harvesting ants, the abundance and composition of seed types available on the ground typically shows a high degree of spatial and temporal variability, and not all types of seed are equally valued by foragers. We evaluated the response of Owyhee harvester ants (Pogonomyrmex salinus) to reductions in the availability of Sandberg …

Pituitary Adenylate Cyclase-Activation Polypeptide (Pacap) Regulates Feeding In The Rat Striatum And Hypothalamus, Matthew M. Hurley

Dissertations (1934 -)

The following dissertation focuses on preclinical rodent feeding paradigms that were designed to examine the mechanisms by which the brain regulates caloric (homeostatic) and palatability (hedonic)-driven feeding. Taken together, my findings suggest differentially motivated feeding can, in part, signal through isolated non-overlapping mechanisms in the brain. Furthermore, some of these mechanisms occur in similar neurocircuits that have been implicated in other compulsive behaviors, such as drug abuse. In an effort to support the argument that binge eating disorder (BED) and substance abuse share similar behavioral and molecular targets, we first demonstrate that the development of BED in rodents is attenuated …

Genetic Basis For Elevated Rheumatic Heart Disease Susceptibility In Samoa, John Bowen Allen

Theses and Dissertations

Rheumatic heart disease is an inflammatory heart disease that affects millions of people around the world. Especially high rates of the disease can be found in Oceania, including the island nation of Samoa. Genetic studies of immune response genes have provided insight into a possible genetic link to increased susceptibility to rheumatic heart disease, including the genes that code for the toll-like receptor (TLR) protein family. One of the functions of TLR proteins is to recognize the presence of bacteria via identification of bacterial flagella. My evaluation of a Samoan family identified a variant in the TLR-5 gene that would …

Rivoli's Hummingbird: Eugenes Fulgens, Donald R. Powers

Faculty Publications - Department of Biological & Molecular Science

Rivoli's Hummingbird was named in honor of the Duke of Rivoli when the species was described by René Lesson in 1829. Even when it became known that William Swainson had written an earlier description of this species in 1827, the common name Rivoli's Hummingbird remained until the early 1980s, when it was changed to Magnificent Hummingbird. In 2017, however, the name was restored to Rivoli's Hummingbird when the American Ornithological Society officially recognized Eugenes fulgens as a distinct species from E. spectabilis, the Talamanca Hummingbird, of the highlands of Costa Rica and western Panama.

Rivoli's Hummingbird is found from the …

Divergent Coevolutionary Trajectories In Parent–Offspring Interactions And Discrimination Against Brood Parasites Revealed By Interspecific Cross-Fostering, Alexandra Capodeanu-Nägler, Anne-Katrin Eggert, Scott K. Sakaluk, Sandra Steiger, Elena Ruiz De La Torre

Faculty Publications – Biological Sciences

In animal families, parents are expected to adapt to their offspring's traits, and offspring, in turn, are expected to adapt to the environment circumscribed by their parents. However, whether such coevolutionary trajectories differ between closely related species is poorly understood. Here, we employ interspecific cross-fostering in three species of burying beetles, Nicrophorus orbicollis, Nicrophorus pustulatus and Nicrophorus vespilloides, to test for divergent co-adaptation among species with different degrees of offspring dependency on parental care, and to test whether they are able to discriminate against interspecific parasites. We found that offspring survival was always higher when offspring were reared …

Synthesis, Oxidation, And Distribution Of Polyphenols In Strawberry Fruit During Cold Storage, Katrina E. Kelly

USF Tampa Graduate Theses and Dissertations

Plants inherently produce polyphenols (i.e., antioxidants) as a response to reduce oxidative stress caused by abusive environmental pre- and postharvest conditions. These antioxidants, as well as vitamin C, are present in considerable levels in strawberries; however, excessive oxidative stress brought on by improper postharvest handling conditions can reduce the levels of antioxidants in the fruit and shorten the shelf-life of strawberries. Nevertheless, it may be possible to utilize strawberry’s naturally occurring polyphenols to reduce postharvest stress and extend their shelf life. The polyphenolic profile has been previously investigated in several strawberry cultivars, however no studies have determined the unique polyphenolic …

Sex-Based Differences In Anti-Predator Response Of Crickets To Chemical Cues Of A Mammalian Predator, Brian P. Tanis, Bradley Bott, Brian J. Gaston

Biological Sciences Faculty Publications

Anti-predator behaviors like vigilance or hiding come at the expense of other fitness increasing behaviors such as foraging. To compensate for this trade-off, prey assess predation risk and modify the frequency of anti-predator behaviors according to the likelihood of the threat. In this study, we tested the ability of house crickets (Acheta domesticus) to indirectly assess predation risk via odors from a mammalian predator, Elliot's short-tailed shrew (Blarina hylophaga). As natural differences in encounter rates and predation risk differs between sexes, we tested if male and female crickets perceive similar rates of predation risk from the presence of shrew odor …

Mapping Molecular Datasets Back To The Brain Regions They Are Extracted From: Remembering The Native Countries Of Hypothalamic Expatriates And Refugees, Khan, Alice Grant, Anais Martinez, Gully Burns, Brendan Thatcher, Vishwanath Anekonda, Benjamin Thompson, Zachary Roberts, Daniel Moralejo, James Blevins

Departmental Papers (Biology)

This article, which includes novel unpublished data along with commentary and analysis,focuses on approaches to link transcriptomic, proteomic, and peptidomic datasets mined frombrain tissue to the original locations within the brain that they are derived from using digital atlasmapping techniques. We use, as an example, the transcriptomic, proteomic and peptidomicanalyses conducted in the mammalian hypothalamus. Following a brief historical overview, wehighlight studies that have mined biochemical and molecular information from the hypothalamusand then lay out a strategy for how these data can be linked spatially to the mapped locations in acanonical brain atlas where the data come from, thereby allowing …

Maternal Angiotensinogen Genotype And Fetal Sex Impact Uteroplacental Function And The Developmental Origins Of Stress-Induced Hypertension, Jessica Faith Hebert

Dissertations and Theses

Fetal growth restriction (FGR) is a common and potentially life-threatening complication that affects 5-10% of human pregnancies. Maternal genetic predisposition and fetal male sex are known risk factors, but the underlying mechanisms are unknown. To study a known maternal genetic risk factor and the impact of fetal sex, we employed a published transgenic (TG) mouse model, which was designed to mimic a common human angiotensinogen (AGT) promoter variant associated with a 20% increase in circulating AGT levels. We hypothesized that TG dams would deliver growth restricted pups and that the underlying mechanism would be related to differences in maternal uterine …

Smelling Weakness: Mechanical Damage Influences The Volatile Emissions Of Prunus Bark, Matthew Hetherington

Theses and Dissertations

Volatile organic compounds (VOCs) emitted from plants often mediate interactions with constituents of the broader ecosystem. In this study I examined the extent to which VOCs emitted from the bark of Prunus species change after mechanical wounding, and thereby influence the behavior of Sesiid peach pests. This research represents the first application of solid-phase microextraction to the characterization of Prunus bark volatiles and the first investigation of bark emissions as mediators of Sesiid behavior in three decades. I document significant decreases in benzaldehyde emission coinciding with increases in benzyl cyanide, p-cymene, linalool, and camphene after wounding in both Prunus species …

Dietary Partitioning Of Toxic Leaves And Fibrous Stems Differs Between Sympatric Specialist And Generalist Mammalian Herbivores, M. M. Crowell, L. A. Shipley, J. S. Forbey, J. L. Rachlow, R. G. Kelsey

Biology Faculty Publications and Presentations

Dietary specialists often reside in habitats that provide a high and predictable abundance of their primary food, which is usually difficult for other herbivores to consume because of high levels of plant toxins or structural impediments. Therefore, sympatric specialist and generalist herbivores may partition food resources within and among plants. We compared how a dietary specialist (pygmy rabbit, Brachylagus idahoensis) and generalist (mountain cottontail, Sylvilagus nuttallii) used sagebrush as a food resource during winter across 3 field sites in Idaho, USA, and in controlled feeding trials with captive rabbits. The proportion of sagebrush consumed by both rabbit species …

Foraging Ecology Of Parrotfishes In The Greater Caribbean: Impacts Of Specialization And Dietary Preferences On Marine Benthic Communities, Madelyn V. Roycroft

Master's Theses

Coral reefs are one of the world’s most diverse yet heavily impacted marine ecosystems. As a result of many direct and indirect stressors, coral reefs have experienced major degradation over the last several decades. Declines in coral reefs in the Caribbean have been particularly acute and generally associated with the loss of key herbivores and an increase in algae. Herbivorous fishes such as parrotfishes can positively impact coral reefs by removing algae that compete with corals for light and space. However, many parrotfishes are also important coral predators. Predation on corals, known as corallivory, can adversely affect coral growth, reproduction …

The Design Of Complex Weapons Systems In Scorpions: Sexual, Ontogenetic, And Interspecific Variation, Gerard A. A. Fox

Loma Linda University Electronic Theses, Dissertations & Projects

Scorpions possess two integrated multifunctional weapons systems. Anteriorly, they maintain a grasping system comprised of a pair of pedipalps ending in chelae that seize and manipulate prey, ward off predators, and secure mates. Posteriorly, they wield a venom delivery system consisting of a tail-like metasoma with a stinger at the tip of the terminal segment (telson) that can be thrust into prey, predators, or mates to inject venom. Given the complexity of these systems, I hypothesized that weaponry design is subject to selective forces arising from differences in usage between the sexes, during ontogeny, and among closely-related species occupying different …

Silk Route To The Acceptance And Re-Implementation Of Bacteriophage Therapy—Part Ii, Wilbert Sybesma, Christine Rohde, Pavol Bardy, Jean Paul Pirnay, Ian Cooper, Jonathan Caplin, Nina Chanishvili, Aidan Coffey, Daniel De Vos, Amber Hartman Scholz, Shawna Mccallin, Hilke Marie Püschner, Roman Pantucek, Rustam Aminov, Jiří Doškař, D. İpek Kurtböke

Department of Biological Sciences Publications

© 2018 by the authors. Licensee MDPI, Basel, Switzerland. This perspective paper follows up on earlier communications on bacteriophage therapy that we wrote as a multidisciplinary and intercontinental expert-panel when we first met at a bacteriophage conference hosted by the Eliava Institute in Tbilisi, Georgia in 2015. In the context of a society that is confronted with an ever-increasing number of antibiotic-resistant bacteria, we build on the previously made recommendations and specifically address how the Nagoya Protocol might impact the further development of bacteriophage therapy. By reviewing a number of recently conducted case studies with bacteriophages involving patients with bacterial …

Biotic Filtering In Endophytic Fungal Communities, Kevin Daniel Ricks

Theses and Dissertations

Plants can be colonized by complex communities of endophytic fungi. This thesis presents two studies, both of which investigate biotic filtering in endophytic fungal communities. Chapter 1. Endophytic fungi can be acquired horizontally via propagules produced in the environment such as in plant litters of various species. Given that litters from different plant species harbor distinct endophytic fungal communities and that endophytic fungi may be dispersal-limited, the structure of the endophytic fungal community of a given plant may be determined by proximity to particular inoculum sources. Community assembly may also be affected by biotic filtering by the plant. Therefore, a …

Partnering With A Pest: Genomes Of Hemlock Woolly Adelgid Symbionts Reveal Atypical Nutritional Provisioning Patterns In Dual-Obligate Bacteria, Kathryn M. Weglarz, Nathan P. Havill, Gaelen R. Burke, Carol D. Von Dohlen

Biology Faculty Publications

Nutritional bacterial symbionts enhance the diets of sap-feeding insects with amino acids and vitamins missing from their diets. In many lineages, an ancestral senior symbiont is joined by a younger junior symbiont. To date, an emergent pattern is that senior symbionts supply a majority of amino acids, and junior symbionts supply a minority. Similar to other hemipterans, adelgids harbor obligate symbionts, but have higher diversity of bacterial associates, suggesting a history of symbiont turnover. The metabolic roles of dual symbionts in adelgids and their contributions to the consortium are largely unexplored. Here, we investigate the symbionts of Adelges tsugae, …

Potential Mechanisms For Nns-Induced Metabolic Deviances: Satiety Hormone Secretion And Alterations In The Gut Microbiota, Kyle J. Decker

DePaul Discoveries

Rising rates of obesity and type 2 diabetes have prompted the usage and recommendation of nonnutritive sweeteners (NNS) as harmless sugar substitutes in attempts to decrease caloric intake. Contrary to the common belief that NNS remain physiologically inert post-consumption, evidence highlights their ability to alter metabolic processes via interactions in the gastrointestinal tract. An extensive review was conducted on the potential NNS-induced metabolic deviances by way of two non-mutually exclusive mechanisms. One possible mechanism involves their ability (or inability) to induce the secretion of GLP-1, a hormone produced in the gut that promotes satiety and accelerates glucose-dependent insulin secretion by …

Direct And Indirect Controls On Bee Community Composition, Caroline Marie Devan

Dissertations

Bees are important pollinators, critical for the continued survival of plants in both natural and agricultural ecosystems. Diverse bee communities have been shown to increase richness in plant communities and plant reproduction depends upon bee community richness. Yet there is growing concern that pollinators, especially bees, are declining globally. This dissertation focuses on evaluating the mechanisms responsible for bee community composition in order to promote bee conservation in natural systems and their restoration in human-dominated urban and agricultural landscapes.

Bee populations are impacted directly by three things: floral resources, nesting resources and risk, primarily from natural enemies. Bees are indirectly …

Synthesis And Preliminary Antimicrobial Analysis Of Isatin- Ferrocene And Isatin-Ferrocenyl Chalcone Conjugates, Amandeep Singh, Grant Fong, Jenny Liu, Yun-Hsuan Wu, Kevin Chang, William Park, Jihwan Kim, Christina Tam, Luisa W. Cheng, Kirkwood M. Land, Vipan Kumar

College of the Pacific Faculty Articles

In this study, we outline the synthesis of isatin-ferrocenyl chalcone and 1H-1,2,3-triazole-tethered isatin-ferrocene conjugates along with their antimicrobial evaluation against the human mucosal pathogen Trichomonas vaginalis. The introduction of a triazole ring among the synthesized conjugates improved the activity profiles with most of the compounds in the library, exhibiting 100% growth inhibition in a preliminary susceptibility screen at 100 μM. IC50 determination of the most potent compounds in the set revealed an inhibitory range between 2 and 13 μM. Normal flora microbiome are unaffected by these compounds, suggesting that these may be new chemical scaffolds for the discovery of new …

The Truncated Bell: An Enigmatic But Pervasive Elevational Diversity Pattern In Middle American Ants, John T. Longino, Michael G. Branstetter

All PIRU Publications

Studies on elevation gradients in Panama and Costa Rica have shown that leaf-litter ants exhibit a mid-elevation peak in diversity. This diversity pattern has been observed in other groups and regions, but uncertainty remains as to just how pervasive it is and what might explain it. Here we examine the robustness of the mid-elevation peak in ant diversity across the entire Middle American corridor, from Veracruz, Mexico, to Costa Rica. We sampled 56 sites distributed throughout Middle America. All were in closed-canopy evergreen wet forest, spanning 11° latitude, from near sea level to 2600 m elevation. Ants were extracted from …

The Physiological Effects Of Exercise On California Yellowtail (Seriola Dorsalis) White Muscle, Julie Giannini

Undergraduate Honors Theses

California yellowtail (Seriola dorsalis) is a species of ray-finned fish that demonstrates a significant increase in muscle mass in response to sustained exercise at optimal swimming speed. In this study, three groups of yellowtail have been analyzed for a 6-month period to determine if the length of exercise affects white muscle fiber development and if these changes persist when the exercised fish have been returned to a normal “resting” condition. Gene analysis was performed to test if MyoD, a myogenic regulatory factor, was upregulated in response to exercise. To test these questions, the groups compared included a control …

Radical Social Ecology As Deep Pragmatism: A Call To The Abolition Of Systemic Dissonance And The Minimization Of Entropic Chaos, Arielle Brender

Student Theses 2015-Present

This paper aims to shed light on the dissonance caused by the superimposition of Dominant Human Systems on Natural Systems. I highlight the synthetic nature of Dominant Human Systems as egoic and linguistic phenomenon manufactured by a mere portion of the human population, which renders them inherently oppressive unto peoples and landscapes whose wisdom were barred from the design process. In pursuing a radical pragmatic approach to mending the simultaneous oppression and destruction of the human being and the earth, I highlight the necessity of minimizing entropic chaos caused by excess energy expenditure, an essential feature of systems that aim …

Parasite Rearing And Infection Temperatures Jointly Influence Disease Transmission And Shape Seasonality Of Epidemics, Marta S. Shocket, Daniela Vergara, Andrew J. Sickbert, Jason M. Walsman, Alexander T. Strauss, Jessica L. Hite, Meghan A. Duffy, Carla E. Caceres, Spencer R. Hall

School of Biological Sciences: Faculty Publications

Seasonal epidemics erupt commonly in nature and are driven by numerous mechanisms. Here, we suggest a new mechanism that could determine the size and timing of seasonal epidemics: rearing environment changes the performance of parasites. This mechanism arises when the environmental conditions in which a parasite is produced impact its performance—independently from the current environment. To illustrate the potential for “rearing effects”, we show how temperature influences infection risk (transmission rate) in a Daphnia-fungus disease system through both parasite rearing temperature and infection temperature. During autumnal epidemics, zooplankton hosts contact (eat) fungal parasites (spores) reared in a gradually cooling environment. …

Social Play Predicts Docility In Juvenile Ground Squirrels, James Hurst-Hopf, Scott L. Nunes

Undergraduate Honors Theses

We evaluated the hypothesis that social play behavior influences the development of temperament in young animals, using docility as a measure of temperament. We observed the play behavior of juvenile Belding’s ground squirrels (Urocitellus beldingi) during the developmental period in which play primarily occurs, and conducted behavioral tests measuring docility at the beginning and end of the play interval. Tests involved handling squirrels and recording their responses. Body mass was a reliable predictor of docility at the beginning of the play period. Rates of social play and maximum distances traveled from the natal burrow during the play interval …