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Ecophysiology Of Toxic Bloom-Forming Cyanobacteria And Their Symbionts, Dominique J. Lockwood

Masters Theses, 2020-current

Currently, there is a pernicious microbe in the genus Microcystis that is putting the world’s freshwater resources at risk. A member of the phylum Cyanobacteria, otherwise referred to as blue-green algae, Microcystis forms massive algal blooms in lakes and has the potential to produce a toxin, which does not only harm humans, but also pets, livestock, and aquatic life. As recently as 2016, in the city of Toledo, Ohio, nearly 1 million residents went without clean drinking water for an entire weekend due to one of these Microcystis blooms. However, Microcystis does not only bloom in Ohio. In fact, …

Neurovascular Regulation In Diabetic Retinopathy And Emerging Therapies, Liyang Ji, Hong Tian, Keith A Webster, Wei Li

Faculty, Staff and Students Publications

Diabetic retinopathy (DR) is the leading cause of vision loss in working adults in developed countries. The disease traditionally classified as a microvascular complication of diabetes is now widely recognized as a neurovascular disorder resulting from disruption of the retinal neurovascular unit (NVU). The NVU comprising retinal neurons, glia and vascular cells coordinately regulates blood flow, vascular density and permeability to maintain homeostasis. Disturbance of the NVU during DR can lead to vision-threatening clinical manifestations. A limited number of signaling pathways have been identified for intercellular communication within the NVU, including vascular endothelial growth factor (VEGF), the master switch for …

Phragmites Australis Dieback In The Mississippi River Delta: Chemical Profiles Of Soil Types And Restoration Potential, Herie Lee

LSU Master's Theses

Since 2016, there has been widespread dieback of P. australis in the Lower Mississippi River Delta (hereafter referred to as Lower MRD, which is defined as the Birds Foot Delta) with relatively little to no signs of recovery. The cause of the current dieback is not fully understood. This thesis explores P. australis with emphasis on chemical profile characterization of different soil types and its effects on plant growth and the potential for restoration in the Lower MRD.

In chapter 2, I characterized the chemical profiles of soils collected from healthy and dieback stands of Phragmites, and from newly …

Quantifying Resource Use Among Insectivorous Bat Species With Overlapping Distributions, Shannon Whitney

Master of Science in Integrative Biology Theses

Bats make up 20% of all mammalian species, are globally distributed, and are the only mammals capable of sustained flight. Bats have adapted to feed on insects, scorpions, aquatic arthropods, mammals, birds, reptiles, amphibians, fish, blood, carrion, fruit, flowers, nectar, pollen, and even seeds and foliage. However, the feeding ecology of these organisms is not well understood. Most bat species in North America rely on the same method of foraging and locomotion. The geographical range and habitats of these bats also commonly overlap. Bat feeding ecology studies have used fecal analysis to identify consumed prey species. Factors such as time …

Characteristics Of Non-Fatal Attacks By Black Bears: Conterminous United States, 2000–2017, Janel M. Scharhag, Cady Sartini, Shawn M. Crimmins, Scott E. Hygnstrom, Jeffrey B. Stetz

Human–Wildlife Interactions

Attacks on humans by bears (Ursus spp.) have increased in recent decades, as both human and bear populations have increased. To help mitigate the risk of future attacks, it is important to understand the circumstances in past attacks. Information and analyses exist regarding fatal attacks by both American black bears (Ursus americanus) and brown bears (U. arctos) as well as non-fatal attacks by brown bears. No similarly thorough analyses on non-fatal attacks by black bears are available. Our study addressed this information gap by analyzing all (n = 210) agency-confirmed, non-fatal attacks by black …

Nesting Habits Of Cavity Nesting Bees And Wasps In Portland, Oregon, Stefanie Kay Steele

Dissertations and Theses

Native bees are threatened by habitat loss through urbanization, however, there is increasing interest in creating bee nesting habitat in urban areas. Few studies have determined what species are present in the region, or examined the role of nest height or cavity size in attracting the approximate one-third of native bees that nest in cavities. To determine what species were present, and whether they showed preferences for nesting at a certain height or cavity width, we set up artificial wooden cavity nest blocks across fourteen locations in the greater Portland, OR area. Wooden posts were erected with nest blocks at …

Genetic, Social And Behavioral Risk Factors Associated With Alzheimer’S Disease, Vineela Nagamalla, Jay Patel, Mir Saleem

Biology Faculty Articles

Alzheimer’s disease (AD) is a neurodegenerative condition which consists of stages of mental, memory, and cognitive decline. As it continues to stand as the sixth leading cause of death in the U.S., 44 million people worldwide are affected. The objective of this paper is to explore the risk factors for AD in an attempt to examine potential causes for the incidence of AD. We examined genetics, lifestyle, and pre-existing conditions as risk factors for AD. We found that there are various alleles, such as APP, PSEN, ADAM, APOE, and TREM2, that play a role in the development of AD. It …

The Anti-Dipsogenic And Anti-Natriorexigenic Effects Of Estradiol, But Not The Anti-Pressor Effect, Are Lost In Aged Female Rats, Jessica Santollo, Jason A. Collett, Andrea A. Edwards

Biology Faculty Publications

Estradiol (E2) inhibits fluid intake in several species, which may help to defend fluid homeostasis by preventing excessive extracellular fluid volume. Although this phenomenon is well established using the rat model, it has only been studied directly in young adults. Because aging influences the neuronal sensitivity to E2 and the fluid intake effects of E2 are mediated in the brain, we tested the hypothesis that aging influences the fluid intake effects of E2 in female rats. To do so, we examined water and NaCl intake in addition to the pressor effect after central angiotensin II treatment in young (3-4 months), …

Late Embryogenesis Abundant Proteins And Mitochondrial Membranes From An Animal Extremophile: Insights Into Severe Water Stress, John Marcus Anderson

LSU Doctoral Dissertations

This dissertation focuses on two major topics germane to mechanisms by which animals tolerate extreme water stress. First, the impact of transgenic expression of late embryogenesis abundant proteins (LEA) on water stress tolerance of the fruit fly Drosophila melanogaster was investigated. The overall aim was to extend current understanding of the protective properties of LEA proteins documented with isolated cells to a desiccation-sensitive organism during exposure to drying and hyperosmotic stress. Four lines of D. melanogaster were created that expressed transgenes encoding selected LEA proteins originally identified in embryos of the extremophile Artemia franciscana. After 80% tissue water loss, …

Keeping Balance Between Genetic Stability And Plasticity At The Telomere And Subtelomere Of Trypanosoma Brucei, Bibo Li Ph.D.

Biological, Geological, and Environmental Faculty Publications

Telomeres, the nucleoprotein complexes at chromosome ends, are well-known for their essential roles in genome integrity and chromosome stability. Yet, telomeres and subtelomeres are frequently less stable than chromosome internal regions. Many subtelomeric genes are important for responding to environmental cues, and subtelomeric instability can facilitate organismal adaptation to extracellular changes, which is a common theme in a number of microbial pathogens. In this review, I will focus on the delicate and important balance between stability and plasticity at telomeres and subtelomeres of a kinetoplastid parasite, Trypanosoma brucei, which causes human African trypanosomiasis and undergoes antigenic variation to evade the …

An American Physiological Society Cross-Journal Call For Papers On “Inter-Organ Communication In Homeostasis And Disease”, Sue C. Bodine, Heddwen L. Brooks, Nigel W. Bunnett, Hilary A. Coller, Mark R. Frey, Bina Joe, Thomas R. Kleyman, Merry L. Lindsey, Andre Marette, Rory E. Morty, Jan Marino Ramírez, Morten B. Thomsen, Gina L.C. Yosten

Biological Sciences Faculty Research & Creative Works

No abstract provided.

Why New Diseases Keep Popping Up, Alan L. Gillen, Jason Conrad

Faculty Publications and Presentations

New and reemerging diseases are terrifying and concerning problems. Not only do they carry a financial and emotional toll, but they account for significant numbers of death. Emerging diseases are usually zoonotic and highly virulent in nature. These are pathogenic and parasitic diseases of high consequence and impact. Why would a good Creator allow these new diseases? Why do new diseases keep popping up? Mutation and displacement of original types of microbes account for many new diseases; however, the answer is more complex than just these two factors. Zoonoses are the most common type of infection, specifically from viral pathogens, …

Domestic Egg-Laying Hens, Gallus Gallus Domesticus, Do Not Modulate Flapping Flight Performance In Response To Wing Condition, Brianna M. León, Bret W. Tobalske, Neila Ben Sassi, Renée Garant, Donald R. Powers, Alexandra Harlander-Matauschek

Faculty Publications - Department of Biological & Molecular Science

Wild birds modulate wing and whole-body kinematics to adjust their flight patterns and trajectories when wing loading increases flight power requirements. Domestic chickens (Gallus gallus domesticus) in backyards and farms exhibit feather loss, naturally high wing loading, and limited flight capabilities. Yet, housing chickens in aviaries requires birds to navigate three-dimensional spaces to access resources. To understand the impact of feather loss on laying hens’ flight capabilities, we symmetrically clipped the primary and secondary feathers before measuring wing and whole-body kinematics during descent from a 1.5 m platform. We expected birds to compensate for increased wing loading by increasing wingbeat …

A Comparative Study On Cannabidiol In Melanoma Migration And Invasion: Charlotte's Web Vs. Purified Cbd, 2020–2021, Ruby Thamert

Theses

Over the last decade, much attention has been focused on compounds from Cannabis sativa in treating a variety of diseases including cancer. This study examines the abilities of two different cannabidiol oils to decrease the migration and invasion of melanoma cells in vitro. Skin cancers are the most common cancers in the world. While malignant melanoma is the least common type of skin cancer, it is the deadliest. Patients diagnosed with stage IV disease have only a 15-20% five-year survival rate even with aggressive multimodal treatment, demonstrating the need for additional therapeutic options. Because melanoma is often fatal when …

The Development Of A Tractable System To Assess Caulobacter-Plant Interactions, Louis Berrios

Theses and Dissertations

Bacteria play an integral role in regulating plant growth and development. However, many of the mechanisms encompassing bacteria-plant interactions are poorly understood and thus require detailed assessments (see CHAPTER 1). To this end, I coupled bacterial (Caulobacter sp.) and plant model organisms (Arabidopsis) to determine 1) the degree to which select bacteria can enhance the growth and development of plants, and 2) what functions these bacteria possess that enable them to aid plant development. Employing bacterial isolation techniques, monoculture inoculum-based plant growth assays, biochemical assays, comparative genomics, functional genetics, and real-time quantitative PCR (RT-qPCR), I determined that …

Cetacean Maternal Investment: Importance In Conservation Across Species And Drivers For Interspecific Altruism, Christopher Klein

USF Tampa Graduate Theses and Dissertations

Cetacean maternal investments can be useful for conservation management as well as examining behaviors such as interspecific altruism in the humpback whale, Megaptera novaeangliae. Cetaceans are among the most threatened group of marine mammals. In the second chapter, maternal investments across ~90 species/subspecies of Cetacea were analyzed to aid in the understanding of recovery/replacement for conservation and management. Using Principal Components Analysis (PCA), a relative maternal-investment index for 41 cetacean species was built. The maternal-investment index was a composite of four maternal-investment variables, the duration of gestation, lactation, calving intervals, and the number of reproduction years per female per species. …

Full Issue: The International Undergraduate Journal Of Health Sciences, Volume 1, Issue 1, June 2021, Iujhs Full Issue

International Undergraduate Journal of Health Sciences

The full June 2021 issue (Volume 1, Issue 1) of the International Undergraduate Journal of Health Sciences

Fruits, Frugivores, And The Evolution Of Phytochemical Diversity, Susan R. Whitehead, Gerald F. Schneider, Ray Dybzinski, Annika S. Nelson, Mariana Gelambi, Elsa Jos, Noelle G. Beckman

Biology Faculty Publications

Plants produce an enormous diversity of secondary metabolites, but the evolutionary mechanisms that maintain this diversity are still unclear. The interaction diversity hypothesis suggests that complex chemical phenotypes are maintained because different metabolites benefit plants in different pairwise interactions with a diversity of other organisms. In this synthesis, we extend the interaction diversity hypothesis to consider that fruits, as potential hotspots of interactions with both antagonists and mutualists, are likely important incubators of phytochemical diversity. We provide a case study focused on the Neotropical shrub Piper reticulatum that demonstrates: 1) secondary metabolites in fruits have complex and cascading effects for …

Targeting The Apoa1 Locus For Liver-Directed Gene Therapy, Marco De Giorgi, Ang Li, Ayrea Hurley, Mercedes Barzi, Alexandria M Doerfler, Nikitha A Cherayil, Harrison E Smith, Jonathan D Brown, Charles Y Lin, Karl-Dimiter Bissig, Gang Bao, William R Lagor

Faculty, Staff and Students Publications

Clinical application of somatic genome editing requires therapeutics that are generalizable to a broad range of patients. Targeted insertion of promoterless transgenes can ensure that edits are permanent and broadly applicable while minimizing risks of off-target integration. In the liver, the Albumin (Alb) locus is currently the only well-characterized site for promoterless transgene insertion. Here, we target the Apoa1 locus with adeno-associated viral (AAV) delivery of CRISPR-Cas9 and achieve rates of 6% to 16% of targeted hepatocytes, with no evidence of toxicity. We further show that the endogenous Apoa1 promoter can drive robust and sustained expression of therapeutic …

Development Of A Split Green Fluorescent Protein Reporting System For Angiogenin, Phan QuỳNh ChâU Lê

Lawrence University Honors Projects

Angiogenin (ANG) is a secreted protein that holds important implications in the growth and survival for a variety of cell types—from healthy endothelial or neuronal cells, to diseased cancer cells. Currently, we lack a complete understanding of ANG’s mechanism of action. Our work aims to develop a functional fluorescence-based reporting system to study ANG internalization activity in cancer cells. Specifically, we utilize a split green fluorescent protein (split GFP) system, in which the 11th strand of the GFP molecule (GFP11) is attached to ANG, while the remaining non-fluorescent GFP1-10 fragment is expressed in our target HeLaGFP1-10 cell line. The reconstitution …

Molecular Mechanisims Underlying The Anti-Cancer Activity Of Gum Arabic From Acacia Sp. In Triple-Negative Breast Cancer Cells., Sawsan Yaslam Alyafii

Theses

Metastatic breast cancer is the leading cause of cancer-related deaths among women worldwide. Triple-negative breast cancer (TNBC) is the most aggressive, accounting for 15-20% of all breast cancer cases. As TNBC cells lack the expression of hormone receptors estrogen receptors (ER) and progesterone receptors (PR) and human epidermal growth factor receptor 2 (HER2), TNBCs are unresponsive to hormonal therapy and often become highly resistant when exposed to standard chemotherapy, which has been identifies as a major obstacle in TNBC treatment. Gum Arabic, a natural exudate produced from plants, is widely used traditionally for religious, cosmetics as well as medical purposes …

Population Structure And Relative Abundance Of Elasmobranch Species Utilizing Inshore Waters Of Abu Dhabi, Shamsa Mohamed Al Hameli

Theses

The diversity, abundance, and distribution of elasmobranchs is poorly documented along the Arabian Gulf coast of the United Arab Emirates, with only a handful of publications focusing on elasmobranchs with the majority of data are collected through landing site and market surveys lacking site and species-specific data that are crucial for conservation management plans. The main objectives of this research were to determine the occurrence and utilization; quantify the relative abundance across different seasons; and describe the demographic structure of elasmobranch species that occurs in shallow waters around mangroves in Khor Al Saadiyat and adjacent islands, northeast of Abu Dhabi, …

Walking Velocity And Estimated Distance Of The Armored Scale Crawler Rhizaspidiotus Donacis, A Biological Control Agent For Arundo Donax, Joshua A. Villarreal, Alexis Racelis, John A. Goolsby

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Arundo scale, Rhizaspidiotus donacis (Leonardi) (Hemiptera: Diaspididae), is an armored scale biological control agent established on the invasive weed, Arundo donax L. (Poaceae; Arundinoideae) at several locations along the Rio Grande in Texas (Goolsby et. al. 2009, Moran and Goolsby 2010, Goolsby et al. 2011, Villarreal et al. 2016). The arundo scale is having significant impact on the target weed in areas where it established (Goolsby and Moran 2019), and no non-target plant use was observed (Goolsby et al. 2020). Armored scale crawlers usually live for less than a day and …

Chemical And Biological Control Of Canker Disease Of Delonix Regia Caused By The Fungus Neoscytalidium Dimidiatum, Seham Mohammed Al Raish

Dissertations

In the United Arab Emirates (UAE), royal poinciana (Delonix regia) trees suffer from stem canker disease. Symptoms of stem canker can be characterized by branch and leaf dryness, bark lesions, discoloration of xylem tissues, longitudinal wood necrosis and extensive gumming. General dieback signs were also observed leading to complete defoliation of leaves and ultimately death of trees in advanced stages. The fungus, Neoscytalidium dimidiatum DSM 109897, was consistently recovered from diseased royal poinciana tissues; this was confirmed by the molecular, structural and morphological studies. Phylogenetic analyses of the translation elongation factor 1-a (TEF1-α) of N. dimidiatum from the …

Anticolon Cancer Activity Of Aristolochia Rotunda Root Extract, Ghufran Ayman Al Salloum

Theses

Colon cancer is the third leading cause of cancer death worldwide and the first cause of cancer death in the UAE. While the conventional cancer therapy options like chemotherapy, radiation, and surgery are effective in the treatment of most cancers, they exhibit precarious side effects that can endanger the life of the patient. The present study explores the potential anticancer effect of Aristolochia rotunda root extract against human colorectal cancer cells. The root extract exhibited strong anti-proliferative activity in a concentration- and time-dependent manner against human colorectal cancer cell lines. A. rotunda root extract also inhibited colony growth and induced …

In-Vitro Analysis Of Potential Autophagy Mediated Safranal-Sorafenib Combined Effect On Hepatocellular Carcinoma, Aaminah Farrukh

Theses

Hepatocellular carcinoma (HCC) is one of the most commonly occurring cancers worldwide. The risk factors include obesity, hepatitis, alcoholism, smoking etc. One of the biggest associated challenges is the current treatment strategies. The therapeutic options are limited with economical and accessibility challenges, especially with increased HCC incidence. Sorafenib, a multikinase inhibitor, is one of the first FDA approved drugs for HCC. But drug resistance and cancer relapse are a common drawback for this treatment. The need for better treatment is crucial now more than ever. The use of saffron as a potential natural therapeutic option is not a novel strategy. …

A Novel Biomarker Panel For The Early Detection And Risk Assessment Of Hepatocellular Carcinoma In Patients With Cirrhosis, Ilvira M Khan, Donjeta Gjuka, Jingjing Jiao, Xiaoling Song, Ying Wang, Jing Wang, Peng Wei, Hashem B El-Serag, Jorge A Marrero, Laura Beretta

Faculty, Staff and Students Publications

Novel biomarkers for hepatocellular carcinoma (HCC) surveillance in patients with cirrhosis are urgently needed. We previously identified osteopontin (OPN) as a promising biomarker for the early detection of HCC. This study is to further validate the performance of OPN and identify fatty acids (FA) that could improve OPN's performance in HCC risk assessment in patients with cirrhosis. To that end, we selected 103 patients with cirrhosis under surveillance. Among them, 40 patients developed HCC during follow-up. We investigated in these 103 patients, the association between HCC incidence and prediagnostic serum levels of AFP, OPN, and 46 FAs. OPN performance was …

The Role Of Irak-1 Transcripts In Sepsis, Adithya Subramanian Sahasranamam

Theses

Sepsis is a complex, life-threatening syndrome that can lead to systemic organ failure and dysfunction. Its high morbidity and mortality rates makes it a critical global health issue. The primary factors at play during sepsis are abnormal inflammation and a lack of oxygen supply to the tissues and muscles. The toll-like receptors play a crucial role in eliciting innate immune in response to infection, primarily through the interleukin-1 receptor-associated kinase (IRAK) pathways. Disturbances in the homeostasis of IRAK signaling cascades can lead to immune dysfunction. n this paper, we review the molecular mechanisms of IRAK-1, an important mediator of TLR-induced …

Assessment Of The Quality And Quantity Of Organic Matter In The Rufiji Mangrove Surface Sediments Using Biochemical Composition, Daniel A Shilla

Tanzania Journal of Science

This study was carried out to investigate spatial changes in the quality and quantity of sedimentary organic matter in the Rufiji mangrove system, Tanzania. Sediment samples were collected from three sampling sites. Total organic matter in mangrove sediments ranged from 7.28 ± 2.02% to 10.58 ± 1.34%. Protein concentrations varied from 1,145.33 ± 20.33 μg/g to 2,747.50 ± 25.14 μg/g in the mangrove sediments. Total carbohydrates, lipids and biopolymeric carbon in mangrove sediments ranged between 1,110.50 ± 16.31 μg/g and 1,914.17 ± 27.79 μg/g, 1,436.50 ± 24.13 μg/g and 6,373.50 ± 25.79 μg/g, and 4,496 μg C/g and 10,231.50 μg …

Assessment Of Fluoride Bioaccumulation Potential In African Catfish (Clarias Gariepinus) Reared In Fluoride Rich Water, Jophillene Bejumula, Revocatus L Machunda, Liliane J Pasape, Kelvin M Mtei

Tanzania Journal of Science

Fluoride bioaccumulation in fish poses a significant impact on their growth, survival and consequently to upper trophic levels. Few studies have reported the impacts of high fluoride concentrations and their accumulation potential to catfish in African settings. A 60-day catfish cultivation was conducted at Ngarenanyuki ward and the Nelson Mandela African Institution of Science and Technology (NM-AIST) in Arusha, Tanzania to determine fluoride bioaccumulation and its impacts to catfish growth and survival. Juvenile catfish were exposed to 36 mg F–/L pond water and synthetic water containing fluoride (NaF) concentrations of 5, 15, 36 and 45 mg/L in aquaria set at …