Digital Commons Network^™

Anxiety And Immunity: Affecting The Body And The Mind, Katelynn Dobbs

Theses/Capstones/Creative Projects

Speculations have been made within the scientific community that there is a link between the underlying mechanisms that impact anxiety disorders and immune system disorders. While many correlations between these disorders have been observed through various immune system disorder studies, this subject is still severely under-explored. In order to examine the potential relationship between anxiety disorders and immune system disorders, a survey was conducted and distributed among the student population at the University of Nebraska at Omaha. This survey collected data by asking a variety of questions that pertained to anxiety and immune system disorders diagnoses within the student population …

Identification Of Synonymous Genes And Pathways Implicated In Irritable Bowel Disease And Pancreatic Duct Adenocarcinoma, Lavanya Uppala

Theses/Capstones/Creative Projects

Better understanding and genetic characterization of the gut microbiome will allow for the identification of clinically distinct gastrointestinal diseases. Facilitated by high throughput technologies, intestinal flora analyses have elucidated a broad spectrum of neuropsychiatric, immunological, and allergic disorders linked with this organ system. Microbiome research especially has shed light on underlying factors of intestinal disorders. This interplay of environmental bacteria versus host tissue gene expression may have implications for disease pathogenicity and etiological determination. For instance, pancreatic disorders are common symptoms of irritable bowel disease (IBD), which is thought to affect approximately 7% to 21% of the population [1]. However, …

Effects Of A Leucine Supplementation On Mitochondrial Markers In Pre-Cachectic Female Mice, Breanna Williams

Biological Sciences Undergraduate Honors Theses

Cancer cachexia is a wasting syndrome characterized by extreme weight and skeletal muscle loss that results in death in many tumor bearing individuals. Because skeletal muscle requires a high amount of energy to function, skeletal muscle fiber cells need healthy mitochondria to function. When skeletal muscle loss atrophy occurs, the mitochondrial network is degraded. Different treatments for this muscle atrophy are being studied, one of which is a leucine supplementation since leucine has been found to stimulate skeletal muscle growth in other studies. However, current data suggests that a leucine supplementation in cachexic individuals exacerbates this atrophy. PURPOSE: This study …

Effects Of Tributyltin Exposure On 8-Ohdg And Dsdna Expressions, Oxidative And Nitrative Stress In The American Oyster, Crassostrea Virginica, Mohan Kumar Dash

Theses and Dissertations

Environmental pollution increases due to anthropogenic activities. Different types of pollutants and/or chemicals impair growth, reproduction and development in aquatic organisms. Tributyltin (TBT, an organotin compound) is a tremendously toxic substance which widely uses as antifouling paints used in boats, hulls, and ships. The toxic effect of TBT is well documented in teleost species. The American oyster (Crassostrea virginica) is an ideal shellfish species to study on TBT exposure DNA lesion and oxidative/nitrative stress. In this study, the effects of TBT on 8’-hyrodxy-2’-deoxyguanosine (8-OHdG, a molecular marker), dsDNA, dinitrophenyl protein …

Invisible Disabilities, Academic Capital And Competitiveness Of Genetic Counseling Applicants, Natalie E. Stoner, Meagan Choates, Carla Mcgruder, Debra Murray, Theresa Wittman, Sara Wofford, Claire N. Singletary

Dissertations and Theses (Open Access)

The field of genetic counseling has historically lacked diversity. Recent research has begun to explore how visible diversity may present barriers to a genetic counseling applicant becoming competitive, but has not yet characterized potential barriers with invisible diversities, such as being a first-generation college student, or a part of the LBGTQ+ community. Therefore, this study aimed to address this gap among those with invisible diversities, as well as explore their academic capital (AC), a theoretical framework used to identify factors that make students more likely to succeed in post-secondary work including supportive networks, trustworthy information, family uplift, college knowledge, overcoming …

At-Home Yogurt Making To Investigate Microbiology Concepts: A Remote Biology Laboratory, Tatiana Kuzmenko, Jacqueline Raetz-Vigon, Demian A. Willette

Biology Faculty Works

The global COVID-19 pandemic has forced many educators to move their courses to the online environment with little time to adjust. It especially affected undergraduate biology laboratory courses that rely on on-campus facilities to provide students with meaningful laboratory-type experiences. Here we describe a multisession, at-home, and hands-on laboratory activity that utilizes yogurt culturing to explore microbiology concepts. We also summarize the findings of 219 undergraduate students who successfully performed this lab remotely. In small virtual groups, students learned how to make yogurt at home, formulate a testable hypothesis, run an experiment on conditions necessary for yogurt fermentation, analyze experimental …

Standardization Of A Protocol To Propagate Gateway Vectors, Kayla Suisse

Undergraduate Honors Capstone Projects

Cloning is an important technique in functional genomics, particularly genetics and molecular biology. Cloned genes can be used to facilitate protein expression; this is an essential step in understanding gene function. In traditional cloning, the gene of interest is amplified and tagged with a restriction enzyme sequence and ligated to the digested open vector. However, the GATEWAY™ Cloning Technology provides a speedy and more efficient route to insert the gene of interest in the desired vector, known as Destination vectors or Expression vectors, using site-specific recombination sites and recombinase enzymes.¹ Once DNA segments from the gene of interest are …

Effect Of Basal Diet And Black Raspberry Supplementation On Gene Biomarkers Of "Leaky Gut" In A Mouse Model Of Colitis-Associated Colorectal Cancer, Eliza Catherine Stewart

Undergraduate Honors Capstone Projects

Colorectal cancer is currently the second leading cause of cancer death in the world. The risk of developing colorectal cancer increases significantly in individuals who suffer from colitis, which is inflammation of the colon lining, seen in Irritable Bowel Disease. The term “leaky gut” is often used to describe increased intestinal permeability and is closely related to colitis. Leaky gut is associated with dysbiosis of the gut microbiota, which can occur through diet. This dysbiosis leads to prolonged inflammation and affects genes that encode for proteins involved in the tight junctions between cells. Compromised intestinal integrity allows for translocation of …

Global Change Effects On Carbon Cycling In Terrestrial Ecosystems, Guopeng Liang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Since terrestrial ecosystems store approximately 3 times more carbon (C) than the atmosphere, they have a significant effect on the atmospheric CO₂ concentration. Although many studies have been conducted to determine global change effects on C cycling in terrestrial ecosystems, the underlying mechanisms remain uncertain. To address this knowledge gap, I utilized meta-analysis, laboratory experiments, and soil microbial community analysis.

In chapter 2, I conducted a meta-analysis to examine whether effects of long-term N addition on plant productivity can shift over time. I found that 44% of studies showed a marked trend (increase or decrease) in the strength of …

Greater Sage-Grouse Brood Responses To Livestock Grazing In Sagebrush Rangelands, Hailey Peatross Wayment

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The distribution and abundance of the greater sage-grouse (Centrocercus urophasianus; sage-grouse) have declined in the last 60 years. Range contractions and population declines have been attributed to loss and fragmentation of their sagebrush (Artemisia spp.) habitats. Grazing by livestock remains the predominant anthropogenic land-use across sagebrush ecosystems in North America, occurring on 87% of remaining sage-grouse habitat. Most of the peer-reviewed literature reports the potential for negative impacts of sagebrush reduction treatments, to increase livestock forage, on sage-grouse habitat. However, few studies have linked livestock grazing at the landscape level to vital rates (e.g., nest initiation rates, …

Analysis Of Test Anxiety In Human Anatomy And Physiology I Students At The University Of Mississippi, Anne Piazza

Honors Theses

Student anxiety, specifically test anxiety, is common hindrance to student performance in various courses including Human Anatomy and Physiology at the University of Mississippi. Through a sequence of three surveys we collected demographic information, anxiety data related to the course, and test anxiety in general We researched factors that could potentially influence student anxiety such as at what point in the semester the student is evaluated, when students feel the most stressed, outcomes on previous evaluations, and perceived outcomes of the course. We also examined what effect the anxiety has on the student such as lowered performance, lowered test scores, …

Towards Conserving Crop Wild Relatives Along The Texas–Mexico Border: The Case Of Manihot Walkerae, Gisel Garza, Crystian Sadel Venegas Barrera, Jon Dale, José Guadalupe Martínez-Ávalos, Teresa Patricia Feria-Arroyo

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Walker’s Manihot, Manihot walkerae, is an endangered species endemic to south Texas and northeastern Mexico and is a Crop Wild Relative (CWR) of the international and economically important crop cassava (M. esculenta). Manihot walkerae is globally endangered (IUCN’s Redlist, Texas list, USA); however, it is not recognized on the Mexican list of endangered species (NOM-059-SEMARNAT). We assessed the status of M. walkerae in Mexico and re-evaluated its global status. According to our analysis, M. walkerae should be considered an endangered species based on the IUCN’s assessment method and a threatened species in Mexico based on the Mexican criteria. Our findings …

Patient Knowledge Of Family History Of Cardiac Events And Risk Factors: Potential For Increase In Preventative Care Of Cardiovascular Diseases, Joseph Marentette

Honors Theses

The following literature review regards the preventative care of cardiovascular disease (CVD) patients with the knowledge of familial cardiac events and personal cardiac risk factors, particularly in younger populations ranging from ages 18 to 39, and develop potential preventative care measures. CVD is preventable with early reduction of risk factors. People can lower the impact of cardiac risk factors through the modification of their current lifestyle and behavioral habits. However, this is limited to the education and motivation of the person. Primary emphasis must be placed on community education and physician-patient interactions regarding CVD and cardiac risk factors. Physicians need …

Kleinstuck Preserve: A Valuable Migratory Bird Stopover In Kalamazoo, Mi, Kelly Giles

Honors Theses

Decreasing bird populations have been noted with habitat loss, climate change, and human development. With an estimated loss of 2.9 billion birds in North American since the 1970’s (Rosenberg et al. 2019), I found it necessary to determine whether this pat tern was reflected in local bird populations. At Kleinstuck Preserve, a birding hotspot in Kalamazoo, MI, I was able to access data from 48 years of bird surveys starting in 1973 with 209 total bird species documented from 1973-2021. Kleinstuck is a 60-acre nature preserve that has been protected as natural land since 1922 despite being surrounded by urban …

Effect Of Dietary Protein On Honey Bee Pollen Foraging Behavior, Caitlin Mchugh, Gracey Sorensen

Biology Student Scholarship

Caitlin McHugh ’24, Majors: Environmental Biology and Economics

Gracey Sorensen ’23, Major: Biology

Faculty Mentor: Dr. Rachael Bonoan, Biology

Bees obtain nutrients from flowers. Pollen provides proteins and fats; nectar provides carbohydrates. Commercial honey bee colonies pollinate monocultures, which contain one crop type thus, one unbalanced nutritional resource. We examined how a lack of protein diversity affects honey bee pollen foraging behavior. Bees were raised on three diet treatments: no manipulation, all 10 essential amino acids (EAAs, i.e., protein building-blocks), or only 6/10 EAAs. Bee-collected pollen was trapped upon return to the hive and nutritional content was analyzed. We predict …

Genetic Covariance In Immune Measures And Pathogen Resistance In Decorated Crickets Is Sex And Pathogen Specific, Corinne Letendre, Kristin Duffield, Ben M. Sadd, Scott K. Sakaluk, Clarissa M. House, John Hunt

Faculty Publications – Biological Sciences

1. Insects are important models for studying immunity in an ecological and evolutionary context. Yet, most empirical work on the insect immune system has come from phenotypic studies meaning we have a limited understanding of the genetic architecture of immune function in the sexes.
2. We use nine highly inbred lines to thoroughly examine the genetic relationships between a suite of commonly used immune assays (haemocyte count, implant encapsulation, total phenoloxidase activity, antibacterial zone of inhibition and pathogen clearance) and resistance to infection by three generalist insect pathogens (the gram-negative bacterium Serratia marcescens, the gram-positive bacterium Bacillus cereus and the fungus …

Literature Review On Outer Hair Cell Regeneration And Potential Hearing Restoration, Serena Karlov

Honors Theses

The cochlea is the portion of the inner ear responsible for hearing, containing both the organ of Corti and auditory hair cells. Sound wave vibrations mechanically bend the stereocilia on the three rows of outer hair cells and one row of inner hair cells. These hair cells transduce this mechanical energy into electrical impulses that are relayed from the auditory nerve to the brain, where sounds are processed. In this review I provide an overview of inner ear anatomy, ear physiology, and auditory transduction. I then move on to specifically focus on the importance of outer hair cells, their regeneration, …

Food For Thought: The Relationship Between Nutrition And Academic Performance, Sarah Freeman

Honors Projects in Science and Technology

Nutrition has been shown to impact the level of cognitive function in individuals. Through the analysis of nutritional diets, this new research will aim to uncover the impact that diet has on cognitive function of Bryant University students by analyzing their ability to perform on a variety of cognitive assessments. This study will provide recommendations to students at Bryant University on what they should eat so they can perform their best academically. This research will also investigate whether Bryant University is offering the best food for students to eat setting them up for success.

Grazing Influences Biomass Production And Protein Content Of Alpine Meadows, Laia Jarque-Bascuñana, Juan Antonio Calleja, Miguel Ibañez, Jordi Bartolomé, Elena Albanell, Johan Espunyes, Arturo Gálvez-Cerón, Josep María López-Martín, Miriam Villamuelas, Diana Gassó, Xavier Fernández-Aguilar, Andreu Colom-Cadena, Jennifer Adams Krumins, Emmanuel Serrano

Department of Biology Faculty Scholarship and Creative Works

Alpine grasslands are essential for carbon sequestration and food supply for domestic and wild herbivores inhabiting mountainous areas worldwide. These biomes, however, are alternatively threatened by the abandonment of agricultural and livestock practices leading to a fast-growing shrubification process while other mountain grasslands are suffering from the impacts of overgrazing. The functioning of alpine meadow ecosystems is primarily driven by climatic conditions, land-use legacies and grazing. However, although it is critically important, the role of large herbivores on the aboveground biomass and protein content of palatable plants is poorly understood for most alpine meadows. In this work, we explore the …

Annual Faculty Research Symposium 2022, Oakwood University

Proceedings

No abstract provided.

Composting During Winter Versus Summer: A Microbial Analysis, Madison Ochs

Honors Theses

Pre-consumer food waste, hay, and woodchips were composted using two different methods of static composting: forced aeration (FA) and natural aeration (NA). The composting process was performed during the winter and summer for 106 and 124 days, respectively. The composting process for both winter and summer processes did not reach the temperature above the 40°C threshold of the thermophilic stage in composting. The microbial communities present during different timepoints (start, peak, and final) along the composting process were analyzed with DNA sequencing techniques and visualized using QIIME 2, an open-source bioinformatics platform. The microbial communities of the winter and summer …

Molecular Approaches For The Validation Of The Baboon As A Nonhuman Primate Model For The Study Of Zika Virus Infection, Emma Mask, V. L. Hodara, Jessica E. Callery, L. M. Parodi, V. Obregon-Perko, S. Yagi, J. Glenn, P. Frost, E. Clemmons, J. L. Patterson, L. A. Cox, Luis D. Giavedoni

Biology Faculty Research

Nonhuman primates (NHP) are particularly important for modeling infections with viruses that do not naturally replicate in rodent cells. Zika virus (ZIKV) has been responsible for sporadic epidemics, but in 2015 a disseminated outbreak of ZIKV resulted in the World Health Organization declaring it a global health emergency. Since the advent of this last epidemic, several NHP species, including the baboon, have been utilized for modeling and understanding the complications of ZIKV infection in humans; several health issues related to the outcome of infection have not been resolved yet and require further investigation. This study was designed to validate, in …

A Photography-Based, Social Media Walking Intervention Targeting Autonomous Motivations For Physical Activity: Semistructured Interviews With Older Women, Michael C Robertson, Maria Chang Swartz, Ursela Christopherson, Jason R Bentley, Karen M Basen-Engquist, Debbe Thompson, Elena Volpi, Elizabeth J Lyons

Faculty, Staff and Students Publications

BACKGROUND: Older adult women are at risk for negative health outcomes that engaging in sustained physical activity can help prevent. However, promoting long-term maintenance of physical activity in this population has proven to be a challenge. Increasing autonomous motivations (ie, intrinsic, integrated, and identified regulations) for physical activity may facilitate enduring behavior change. Digitally delivered games for health that take a celebratory technology approach, that is, using technology to create new ways to experience valued behaviors and express valued beliefs, may be a useful way to target autonomous motivations for physical activity. Formative research with the target population is needed …

The Interplay Between Hydrogen Sulfide And Phytohormone Signaling Pathways Under Challenging Environments, Muhammad Saad Shoaib Khan, Faisal Islam, Yajin Ye, Matthew Ashline, Daowen Wang, Biying Zhao, Zheng Qing Fu, Jian Chen

Faculty Publications

Hydrogen sulfide (H₂S) serves as an important gaseous signaling molecule that is involved in intra- and intercellular signal transduction in plant–environment interactions. In plants, H₂S is formed in sulfate/cysteine reduction pathways. The activation of endogenous H₂S and its exogenous application has been found to be highly effective in ameliorating a wide variety of stress conditions in plants. The H₂S interferes with the cellular redox regulatory network and prevents the degradation of proteins from oxidative stress via post-translational modifications (PTMs). H₂S-mediated persulfidation allows the rapid response of proteins in signaling networks …

Human Pancreatic Microenvironment Promotes Β-Cell Differentiation Via Non-Canonical Wnt5a/Jnk And Bmp Signaling, Jolanta Chmielowiec, Wojciech J Szlachcic, Diane Yang, Marissa A Scavuzzo, Katrina Wamble, Alejandro Sarrion-Perdigones, Omaima M Sabek, Koen J T Venken, Malgorzata Borowiak

Faculty, Staff and Students Publications

In vitro derivation of pancreatic β-cells from human pluripotent stem cells holds promise as diabetes treatment. Despite recent progress, efforts to generate physiologically competent β-cells are still hindered by incomplete understanding of the microenvironment's role in β-cell development and maturation. Here, we analyze the human mesenchymal and endothelial primary cells from weeks 9-20 fetal pancreas and identify a time point-specific microenvironment that permits β-cell differentiation. Further, we uncover unique factors that guide in vitro development of endocrine progenitors, with WNT5A markedly improving human β-cell differentiation. WNT5A initially acts through the non-canonical (JNK/c-JUN) WNT signaling and cooperates with Gremlin1 to inhibit …

Sex Ratios And The City: Is Parental Corticosterone A Mediator Of The Relationship Between Urbanization And Offspring Sex Allocation?, Denyelle Kilgour

Master of Science in Integrative Biology Theses

The Trivers-Willard hypothesis states that mothers can adjust their offspring sex ratios according to their own condition and the environmental conditions they face during breeding. Past tests of this hypothesis in avian species have focused on how natural variation shapes sex allocation trade-offs. However, urbanization also influences individual condition and presents animals with novel challenges in optimizing their brood sex ratio. One likely mediator of the relationship between environmental conditions, parental condition, and sex ratios is corticosterone (CORT), the primary glucocorticoid in birds. However, no research has examined the links between urbanization, individual condition, CORT, and adaptive sex allocation within …

Temporal Variation Of Bacterial Community And Nutrients In Tibetan Glacier Snowpack, Yuying Chen, Keshao Liu, Yongqin Liu, Trista J. Vick‐Majors, Feng Wang, Mukan Ji

Michigan Tech Publications, Part 1

The Tibetan Plateau harbors the largest number of glaciers outside the polar regions, which are the source of several major rivers in Asia. These glaciers are also major sources of nutrients for downstream ecosystems, while there is a little amount of data available on the nutrient transformation processes on the glacier surface. Here, we monitored the carbon and nitrogen concentration changes in a snowpit following a snowfall in the Dunde Glacier of the Tibetan Plateau. The association of carbon and nitrogen changes with bacterial community dynamics was investigated in the surface and subsurface snow (depth at 0–15 and 15–30 cm, …

Docosahexaenoic Acid May Reduce Risk Factors Of Cancer Development In A Mouse Model Of Colitis-Associated Colorectal Cancer, Eliza Stewart, Marcus Hayden

Student Research Symposium

Colorectal cancer (CRC) is one of the most prevalent cancers worldwide and has increased incidence in developed countries. There is a close link between CRC and inflammatory bowel disease (IBD). A main symptom of IBD is colitis, which is inflammation of the colon. Diet plays a key role in the development of CRC, specifically a Western-type diet, which is characterized by energy dense and nutrient deficient foods. This dietary pattern is associated with both increased inflammation and dysbiosis of the gut microbiome, two factors that contribute to the development of CRC. Docosahexaenoic acid (DHA) is an omega-3 fatty acid that …

Quantifying Predator Functional Responses Under Field Conditions Reveals Interactive Effects Of Temperature And Interference With Sex And Stage, Kyle E. Coblentz, Amber Squires, Stella Uiterwaal, John Delong

School of Biological Sciences: Faculty Publications

1. Predator functional responses describe predator feeding rates and are central to predator–prey theory. Originally defined as the relationship between predator feeding rates and prey densities, it is now well known that functional responses are shaped by a multitude of factors. However, much of our knowledge about how these factors influence functional responses is based on laboratory studies that are generally logistically constrained to examining only a few factors simultaneously and that have unclear links to the conditions organisms experience in the field.
2. We apply an observational approach for measuring functional responses to understand how sex/stage differences, temperature and predator densities …

Environment And Co-Occurring Native Mussel Species, But Not Host Genetics, Impact The Microbiome Of A Freshwater Invasive Species (Corbicula Fluminea), Marlène Chiarello, Jamie R. Bucholz, Mark Mccauley, Stephanie N. Vaughn, Garrett W. Hopper, Irene Sánchez González, Carla L. Atkinson, Jeffrey D. Lozier, Colin R. Jackson

Faculty and Student Publications

The Asian clam Corbicula fluminea (Family: Cyneridae) has aggressively invaded freshwater habitats worldwide, resulting in dramatic ecological changes and declines of native bivalves such as freshwater mussels (Family: Unionidae), one of the most imperiled faunal groups. Despite increases in our knowledge of invasive C. fluminea biology, little is known of how intrinsic and extrinsic factors, including co-occurring native species, influence its microbiome. We investigated the gut bacterial microbiome across genetically differentiated populations of C. fluminea in the Tennessee and Mobile River Basins in the Southeastern United States and compared them to those of six co-occurring species of native freshwater mussels. …